data_5LLD
#
_model_server_result.job_id            qcgNS_owyaeRkW-5RHHU3Q 
_model_server_result.datetime_utc      '2024-10-20 00:51:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5lld 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":504}' 
#
_entry.id    5LLD 
#
_exptl.entry_id    5LLD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              456.344 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN MONONUCLEOTIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5LLD 
_cell.length_a            151.7 
_cell.length_b            151.7 
_cell.length_c            96.5 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5LLD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        177 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 6 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F 1 1 
A,B,C,D,E,F 1 2 
A,B,C,D,E,F 1 3 
A,B,C,D,E,F 1 4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 75.85 131.376054 0 
3 'crystal symmetry operation' 7_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 96.5 
4 'crystal symmetry operation' 10_666 -y+1,-x+1,-z+1 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 75.85 131.376054 96.5 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 79 A HIS 79 1_555 C FE FE . A FE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? 
metalc ? metalc2 A OE1 GLU 81 A GLU 81 1_555 C FE FE . A FE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? 
metalc ? metalc3 A OD2 ASP 83 A ASP 83 1_555 B FE FE . A FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? 
metalc ? metalc4 A NE2 HIS 84 A HIS 84 1_555 B FE FE . A FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
metalc ? metalc5 A NE2 HIS 147 A HIS 147 1_555 C FE FE . A FE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
metalc ? metalc6 A OD1 ASP 166 A ASP 166 1_555 B FE FE . A FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? 
metalc ? metalc7 A OD2 ASP 166 A ASP 166 1_555 C FE FE . A FE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? 
metalc ? metalc8 A NE2 HIS 227 A HIS 227 1_555 B FE FE . A FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? 
metalc ? metalc9 B FE FE . A FE 501 1_555 D O1 OXY . A OXY 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? 
#
_chem_comp.formula           'C17 H21 N4 O9 P' 
_chem_comp.formula_weight    456.344 
_chem_comp.id                FMN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN MONONUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'RIBOFLAVIN MONOPHOSPHATE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 FMN sing 83 n n 
N1 C10 FMN doub 84 n n 
C2 O2 FMN doub 85 n n 
C2 N3 FMN sing 86 n n 
N3 C4 FMN sing 87 n n 
N3 HN3 FMN sing 88 n n 
C4 O4 FMN doub 89 n n 
C4 C4A FMN sing 90 n n 
C4A N5 FMN doub 91 n n 
C4A C10 FMN sing 92 n n 
N5 C5A FMN sing 93 n n 
C5A C6 FMN doub 94 n y 
C5A C9A FMN sing 95 n y 
C6 C7 FMN sing 96 n y 
C6 H6 FMN sing 97 n n 
C7 C7M FMN sing 98 n n 
C7 C8 FMN doub 99 n y 
C7M HM71 FMN sing 100 n n 
C7M HM72 FMN sing 101 n n 
C7M HM73 FMN sing 102 n n 
C8 C8M FMN sing 103 n n 
C8 C9 FMN sing 104 n y 
C8M HM81 FMN sing 105 n n 
C8M HM82 FMN sing 106 n n 
C8M HM83 FMN sing 107 n n 
C9 C9A FMN doub 108 n y 
C9 H9 FMN sing 109 n n 
C9A N10 FMN sing 110 n n 
N10 C10 FMN sing 111 n n 
N10 C1' FMN sing 112 n n 
C1' C2' FMN sing 113 n n 
C1' "H1'1" FMN sing 114 n n 
C1' "H1'2" FMN sing 115 n n 
C2' O2' FMN sing 116 n n 
C2' C3' FMN sing 117 n n 
C2' H2' FMN sing 118 n n 
O2' HO2' FMN sing 119 n n 
C3' O3' FMN sing 120 n n 
C3' C4' FMN sing 121 n n 
C3' H3' FMN sing 122 n n 
O3' HO3' FMN sing 123 n n 
C4' O4' FMN sing 124 n n 
C4' C5' FMN sing 125 n n 
C4' H4' FMN sing 126 n n 
O4' HO4' FMN sing 127 n n 
C5' O5' FMN sing 128 n n 
C5' "H5'1" FMN sing 129 n n 
C5' "H5'2" FMN sing 130 n n 
O5' P FMN sing 131 n n 
P O1P FMN doub 132 n n 
P O2P FMN sing 133 n n 
P O3P FMN sing 134 n n 
O2P HOP2 FMN sing 135 n n 
O3P HOP3 FMN sing 136 n n 
#
_atom_sites.entry_id                     5LLD 
_atom_sites.fract_transf_matrix[1][1]    0.006592 
_atom_sites.fract_transf_matrix[1][2]    0.003806 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007612 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010363 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FE A 1 501 480 FE FE . 
C 2 FE A 1 502 481 FE FE . 
D 3 OXY A 1 503 482 OXY OXY . 
E 4 FMN A 1 504 483 FMN FMN . 
F 5 HOH A 1 601 61 HOH HOH . 
F 5 HOH A 2 602 93 HOH HOH . 
F 5 HOH A 3 603 18 HOH HOH . 
F 5 HOH A 4 604 34 HOH HOH . 
F 5 HOH A 5 605 2 HOH HOH . 
F 5 HOH A 6 606 23 HOH HOH . 
F 5 HOH A 7 607 6 HOH HOH . 
F 5 HOH A 8 608 77 HOH HOH . 
F 5 HOH A 9 609 69 HOH HOH . 
F 5 HOH A 10 610 68 HOH HOH . 
F 5 HOH A 11 611 4 HOH HOH . 
F 5 HOH A 12 612 113 HOH HOH . 
F 5 HOH A 13 613 40 HOH HOH . 
F 5 HOH A 14 614 92 HOH HOH . 
F 5 HOH A 15 615 59 HOH HOH . 
F 5 HOH A 16 616 128 HOH HOH . 
F 5 HOH A 17 617 26 HOH HOH . 
F 5 HOH A 18 618 36 HOH HOH . 
F 5 HOH A 19 619 62 HOH HOH . 
F 5 HOH A 20 620 64 HOH HOH . 
F 5 HOH A 21 621 63 HOH HOH . 
F 5 HOH A 22 622 37 HOH HOH . 
F 5 HOH A 23 623 16 HOH HOH . 
F 5 HOH A 24 624 5 HOH HOH . 
F 5 HOH A 25 625 60 HOH HOH . 
F 5 HOH A 26 626 57 HOH HOH . 
F 5 HOH A 27 627 78 HOH HOH . 
F 5 HOH A 28 628 94 HOH HOH . 
F 5 HOH A 29 629 91 HOH HOH . 
F 5 HOH A 30 630 72 HOH HOH . 
F 5 HOH A 31 631 35 HOH HOH . 
F 5 HOH A 32 632 81 HOH HOH . 
F 5 HOH A 33 633 24 HOH HOH . 
F 5 HOH A 34 634 17 HOH HOH . 
F 5 HOH A 35 635 28 HOH HOH . 
F 5 HOH A 36 636 70 HOH HOH . 
F 5 HOH A 37 637 14 HOH HOH . 
F 5 HOH A 38 638 3 HOH HOH . 
F 5 HOH A 39 639 10 HOH HOH . 
F 5 HOH A 40 640 9 HOH HOH . 
F 5 HOH A 41 641 43 HOH HOH . 
F 5 HOH A 42 642 12 HOH HOH . 
F 5 HOH A 43 643 22 HOH HOH . 
F 5 HOH A 44 644 51 HOH HOH . 
F 5 HOH A 45 645 84 HOH HOH . 
F 5 HOH A 46 646 47 HOH HOH . 
F 5 HOH A 47 647 21 HOH HOH . 
F 5 HOH A 48 648 33 HOH HOH . 
F 5 HOH A 49 649 20 HOH HOH . 
F 5 HOH A 50 650 30 HOH HOH . 
F 5 HOH A 51 651 25 HOH HOH . 
F 5 HOH A 52 652 8 HOH HOH . 
F 5 HOH A 53 653 101 HOH HOH . 
F 5 HOH A 54 654 55 HOH HOH . 
F 5 HOH A 55 655 13 HOH HOH . 
F 5 HOH A 56 656 116 HOH HOH . 
F 5 HOH A 57 657 15 HOH HOH . 
F 5 HOH A 58 658 19 HOH HOH . 
F 5 HOH A 59 659 74 HOH HOH . 
F 5 HOH A 60 660 75 HOH HOH . 
F 5 HOH A 61 661 42 HOH HOH . 
F 5 HOH A 62 662 83 HOH HOH . 
F 5 HOH A 63 663 109 HOH HOH . 
F 5 HOH A 64 664 107 HOH HOH . 
F 5 HOH A 65 665 105 HOH HOH . 
F 5 HOH A 66 666 45 HOH HOH . 
F 5 HOH A 67 667 88 HOH HOH . 
F 5 HOH A 68 668 1 HOH HOH . 
F 5 HOH A 69 669 97 HOH HOH . 
F 5 HOH A 70 670 79 HOH HOH . 
F 5 HOH A 71 671 114 HOH HOH . 
F 5 HOH A 72 672 124 HOH HOH . 
F 5 HOH A 73 673 95 HOH HOH . 
F 5 HOH A 74 674 50 HOH HOH . 
F 5 HOH A 75 675 90 HOH HOH . 
F 5 HOH A 76 676 85 HOH HOH . 
F 5 HOH A 77 677 52 HOH HOH . 
F 5 HOH A 78 678 39 HOH HOH . 
F 5 HOH A 79 679 121 HOH HOH . 
F 5 HOH A 80 680 54 HOH HOH . 
F 5 HOH A 81 681 7 HOH HOH . 
F 5 HOH A 82 682 96 HOH HOH . 
F 5 HOH A 83 683 102 HOH HOH . 
F 5 HOH A 84 684 58 HOH HOH . 
F 5 HOH A 85 685 29 HOH HOH . 
F 5 HOH A 86 686 100 HOH HOH . 
F 5 HOH A 87 687 66 HOH HOH . 
F 5 HOH A 88 688 76 HOH HOH . 
F 5 HOH A 89 689 46 HOH HOH . 
F 5 HOH A 90 690 104 HOH HOH . 
F 5 HOH A 91 691 82 HOH HOH . 
F 5 HOH A 92 692 89 HOH HOH . 
F 5 HOH A 93 693 117 HOH HOH . 
F 5 HOH A 94 694 48 HOH HOH . 
F 5 HOH A 95 695 11 HOH HOH . 
F 5 HOH A 96 696 99 HOH HOH . 
F 5 HOH A 97 697 122 HOH HOH . 
F 5 HOH A 98 698 71 HOH HOH . 
F 5 HOH A 99 699 31 HOH HOH . 
F 5 HOH A 100 700 44 HOH HOH . 
F 5 HOH A 101 701 123 HOH HOH . 
F 5 HOH A 102 702 65 HOH HOH . 
F 5 HOH A 103 703 120 HOH HOH . 
F 5 HOH A 104 704 49 HOH HOH . 
F 5 HOH A 105 705 111 HOH HOH . 
F 5 HOH A 106 706 86 HOH HOH . 
F 5 HOH A 107 707 73 HOH HOH . 
F 5 HOH A 108 708 110 HOH HOH . 
F 5 HOH A 109 709 119 HOH HOH . 
F 5 HOH A 110 710 126 HOH HOH . 
F 5 HOH A 111 711 118 HOH HOH . 
F 5 HOH A 112 712 67 HOH HOH . 
F 5 HOH A 113 713 32 HOH HOH . 
F 5 HOH A 114 714 87 HOH HOH . 
F 5 HOH A 115 715 106 HOH HOH . 
F 5 HOH A 116 716 38 HOH HOH . 
F 5 HOH A 117 717 115 HOH HOH . 
F 5 HOH A 118 718 108 HOH HOH . 
F 5 HOH A 119 719 127 HOH HOH . 
F 5 HOH A 120 720 56 HOH HOH . 
F 5 HOH A 121 721 98 HOH HOH . 
F 5 HOH A 122 722 125 HOH HOH . 
F 5 HOH A 123 723 41 HOH HOH . 
F 5 HOH A 124 724 80 HOH HOH . 
F 5 HOH A 125 725 53 HOH HOH . 
F 5 HOH A 126 726 27 HOH HOH . 
F 5 HOH A 127 727 103 HOH HOH . 
F 5 HOH A 128 728 112 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 FMN . . . E 4 21.626 81.477 66.059 1 21.15 ? N1 FMN 504 A 1 
HETATM 2 C C2 FMN . . . E 4 20.442 82.144 65.826 1 20.54 ? C2 FMN 504 A 1 
HETATM 3 O O2 FMN . . . E 4 19.495 81.991 66.594 1 29.27 ? O2 FMN 504 A 1 
HETATM 4 N N3 FMN . . . E 4 20.319 82.984 64.737 1 29.61 ? N3 FMN 504 A 1 
HETATM 5 C C4 FMN . . . E 4 21.381 83.159 63.874 1 29.91 ? C4 FMN 504 A 1 
HETATM 6 O O4 FMN . . . E 4 21.271 83.906 62.903 1 25.24 ? O4 FMN 504 A 1 
HETATM 7 C C4A FMN . . . E 4 22.575 82.486 64.104 1 31.58 ? C4A FMN 504 A 1 
HETATM 8 N N5 FMN . . . E 4 23.643 82.655 63.247 1 31.86 ? N5 FMN 504 A 1 
HETATM 9 C C5A FMN . . . E 4 24.826 81.984 63.481 1 25.05 ? C5A FMN 504 A 1 
HETATM 10 C C6 FMN . . . E 4 25.899 82.155 62.616 1 11.33 ? C6 FMN 504 A 1 
HETATM 11 C C7 FMN . . . E 4 27.094 81.485 62.846 1 18.53 ? C7 FMN 504 A 1 
HETATM 12 C C7M FMN . . . E 4 28.254 81.669 61.913 1 13.98 ? C7M FMN 504 A 1 
HETATM 13 C C8 FMN . . . E 4 27.215 80.642 63.943 1 22.03 ? C8 FMN 504 A 1 
HETATM 14 C C8M FMN . . . E 4 28.507 79.919 64.187 1 17.79 ? C8M FMN 504 A 1 
HETATM 15 C C9 FMN . . . E 4 26.142 80.47 64.809 1 24.29 ? C9 FMN 504 A 1 
HETATM 16 C C9A FMN . . . E 4 24.945 81.14 64.581 1 27.96 ? C9A FMN 504 A 1 
HETATM 17 N N10 FMN . . . E 4 23.873 80.968 65.437 1 20.14 ? N10 FMN 504 A 1 
HETATM 18 C C10 FMN . . . E 4 22.693 81.644 65.203 1 24.37 ? C10 FMN 504 A 1 
HETATM 19 C C1' FMN . . . E 4 23.985 80.071 66.634 1 11.73 ? C1' FMN 504 A 1 
HETATM 20 C C2' FMN . . . E 4 23.793 78.605 66.268 1 19.93 ? C2' FMN 504 A 1 
HETATM 21 O O2' FMN . . . E 4 22.568 78.434 65.596 1 19.61 ? O2' FMN 504 A 1 
HETATM 22 C C3' FMN . . . E 4 23.804 77.765 67.536 1 16.8 ? C3' FMN 504 A 1 
HETATM 23 O O3' FMN . . . E 4 25.122 77.736 68.032 1 14.6 ? O3' FMN 504 A 1 
HETATM 24 C C4' FMN . . . E 4 23.327 76.342 67.281 1 13.64 ? C4' FMN 504 A 1 
HETATM 25 O O4' FMN . . . E 4 23.107 75.696 68.512 1 17.13 ? O4' FMN 504 A 1 
HETATM 26 C C5' FMN . . . E 4 24.369 75.548 66.51 1 13.9 ? C5' FMN 504 A 1 
HETATM 27 O O5' FMN . . . E 4 23.754 74.413 65.947 1 14.88 ? O5' FMN 504 A 1 
HETATM 28 P P FMN . . . E 4 24.651 73.252 65.287 1 26.69 ? P FMN 504 A 1 
HETATM 29 O O1P FMN . . . E 4 23.836 71.986 65.224 1 7.13 ? O1P FMN 504 A 1 
HETATM 30 O O2P FMN . . . E 4 25.074 73.669 63.899 1 27.43 ? O2P FMN 504 A 1 
HETATM 31 O O3P FMN . . . E 4 25.871 73.01 66.141 1 13.48 ? O3P FMN 504 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           267 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           31 
#