data_5LLK # _model_server_result.job_id idK4r0tWWjrvlc7vBUdM2A _model_server_result.datetime_utc '2024-10-13 07:19:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5llk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5LLK # _exptl.entry_id 5LLK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5LLK _cell.length_a 71.52 _cell.length_b 71.52 _cell.length_c 144.01 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LLK _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 133 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 182 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 215 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 264 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.048 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 5LLK _atom_sites.fract_transf_matrix[1][1] 0.013982 _atom_sites.fract_transf_matrix[1][2] 0.008073 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016145 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006944 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 401 1 EDO EDO . C 2 EDO A 1 402 2 EDO EDO . D 3 HOH A 1 501 119 HOH HOH . D 3 HOH A 2 502 122 HOH HOH . D 3 HOH A 3 503 16 HOH HOH . D 3 HOH A 4 504 118 HOH HOH . D 3 HOH A 5 505 127 HOH HOH . D 3 HOH A 6 506 19 HOH HOH . D 3 HOH A 7 507 54 HOH HOH . D 3 HOH A 8 508 133 HOH HOH . D 3 HOH A 9 509 66 HOH HOH . D 3 HOH A 10 510 17 HOH HOH . D 3 HOH A 11 511 88 HOH HOH . D 3 HOH A 12 512 71 HOH HOH . D 3 HOH A 13 513 61 HOH HOH . D 3 HOH A 14 514 45 HOH HOH . D 3 HOH A 15 515 112 HOH HOH . D 3 HOH A 16 516 59 HOH HOH . D 3 HOH A 17 517 41 HOH HOH . D 3 HOH A 18 518 103 HOH HOH . D 3 HOH A 19 519 101 HOH HOH . D 3 HOH A 20 520 49 HOH HOH . D 3 HOH A 21 521 67 HOH HOH . D 3 HOH A 22 522 117 HOH HOH . D 3 HOH A 23 523 65 HOH HOH . D 3 HOH A 24 524 36 HOH HOH . D 3 HOH A 25 525 115 HOH HOH . D 3 HOH A 26 526 55 HOH HOH . D 3 HOH A 27 527 34 HOH HOH . D 3 HOH A 28 528 8 HOH HOH . D 3 HOH A 29 529 28 HOH HOH . D 3 HOH A 30 530 111 HOH HOH . D 3 HOH A 31 531 25 HOH HOH . D 3 HOH A 32 532 14 HOH HOH . D 3 HOH A 33 533 30 HOH HOH . D 3 HOH A 34 534 51 HOH HOH . D 3 HOH A 35 535 4 HOH HOH . D 3 HOH A 36 536 91 HOH HOH . D 3 HOH A 37 537 20 HOH HOH . D 3 HOH A 38 538 86 HOH HOH . D 3 HOH A 39 539 5 HOH HOH . D 3 HOH A 40 540 63 HOH HOH . D 3 HOH A 41 541 31 HOH HOH . D 3 HOH A 42 542 128 HOH HOH . D 3 HOH A 43 543 27 HOH HOH . D 3 HOH A 44 544 32 HOH HOH . D 3 HOH A 45 545 37 HOH HOH . D 3 HOH A 46 546 113 HOH HOH . D 3 HOH A 47 547 22 HOH HOH . D 3 HOH A 48 548 13 HOH HOH . D 3 HOH A 49 549 109 HOH HOH . D 3 HOH A 50 550 11 HOH HOH . D 3 HOH A 51 551 43 HOH HOH . D 3 HOH A 52 552 26 HOH HOH . D 3 HOH A 53 553 10 HOH HOH . D 3 HOH A 54 554 2 HOH HOH . D 3 HOH A 55 555 126 HOH HOH . D 3 HOH A 56 556 108 HOH HOH . D 3 HOH A 57 557 89 HOH HOH . D 3 HOH A 58 558 62 HOH HOH . D 3 HOH A 59 559 1 HOH HOH . D 3 HOH A 60 560 105 HOH HOH . D 3 HOH A 61 561 53 HOH HOH . D 3 HOH A 62 562 123 HOH HOH . D 3 HOH A 63 563 33 HOH HOH . D 3 HOH A 64 564 15 HOH HOH . D 3 HOH A 65 565 125 HOH HOH . D 3 HOH A 66 566 7 HOH HOH . D 3 HOH A 67 567 6 HOH HOH . D 3 HOH A 68 568 9 HOH HOH . D 3 HOH A 69 569 3 HOH HOH . D 3 HOH A 70 570 79 HOH HOH . D 3 HOH A 71 571 76 HOH HOH . D 3 HOH A 72 572 44 HOH HOH . D 3 HOH A 73 573 77 HOH HOH . D 3 HOH A 74 574 72 HOH HOH . D 3 HOH A 75 575 100 HOH HOH . D 3 HOH A 76 576 56 HOH HOH . D 3 HOH A 77 577 110 HOH HOH . D 3 HOH A 78 578 24 HOH HOH . D 3 HOH A 79 579 57 HOH HOH . D 3 HOH A 80 580 130 HOH HOH . D 3 HOH A 81 581 12 HOH HOH . D 3 HOH A 82 582 35 HOH HOH . D 3 HOH A 83 583 39 HOH HOH . D 3 HOH A 84 584 129 HOH HOH . D 3 HOH A 85 585 52 HOH HOH . D 3 HOH A 86 586 40 HOH HOH . D 3 HOH A 87 587 50 HOH HOH . D 3 HOH A 88 588 135 HOH HOH . D 3 HOH A 89 589 98 HOH HOH . D 3 HOH A 90 590 97 HOH HOH . D 3 HOH A 91 591 18 HOH HOH . D 3 HOH A 92 592 68 HOH HOH . D 3 HOH A 93 593 29 HOH HOH . D 3 HOH A 94 594 21 HOH HOH . D 3 HOH A 95 595 82 HOH HOH . D 3 HOH A 96 596 92 HOH HOH . D 3 HOH A 97 597 87 HOH HOH . D 3 HOH A 98 598 116 HOH HOH . D 3 HOH A 99 599 136 HOH HOH . D 3 HOH A 100 600 70 HOH HOH . D 3 HOH A 101 601 78 HOH HOH . D 3 HOH A 102 602 23 HOH HOH . D 3 HOH A 103 603 64 HOH HOH . D 3 HOH A 104 604 73 HOH HOH . D 3 HOH A 105 605 99 HOH HOH . D 3 HOH A 106 606 104 HOH HOH . D 3 HOH A 107 607 93 HOH HOH . D 3 HOH A 108 608 90 HOH HOH . D 3 HOH A 109 609 114 HOH HOH . D 3 HOH A 110 610 85 HOH HOH . D 3 HOH A 111 611 48 HOH HOH . D 3 HOH A 112 612 94 HOH HOH . D 3 HOH A 113 613 106 HOH HOH . D 3 HOH A 114 614 60 HOH HOH . D 3 HOH A 115 615 80 HOH HOH . D 3 HOH A 116 616 47 HOH HOH . D 3 HOH A 117 617 69 HOH HOH . D 3 HOH A 118 618 102 HOH HOH . D 3 HOH A 119 619 96 HOH HOH . D 3 HOH A 120 620 131 HOH HOH . D 3 HOH A 121 621 81 HOH HOH . D 3 HOH A 122 622 134 HOH HOH . D 3 HOH A 123 623 124 HOH HOH . D 3 HOH A 124 624 42 HOH HOH . D 3 HOH A 125 625 84 HOH HOH . D 3 HOH A 126 626 74 HOH HOH . D 3 HOH A 127 627 75 HOH HOH . D 3 HOH A 128 628 46 HOH HOH . D 3 HOH A 129 629 58 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . B 2 -41.214 -14.059 5.231 1 59.52 ? C1 EDO 401 A 1 HETATM 2 O O1 EDO . . . B 2 -40.144 -14.162 4.272 1 49.84 ? O1 EDO 401 A 1 HETATM 3 C C2 EDO . . . B 2 -41.949 -12.737 5.083 1 56.54 ? C2 EDO 401 A 1 HETATM 4 O O2 EDO . . . B 2 -42.645 -12.722 3.834 1 70.89 ? O2 EDO 401 A 1 HETATM 5 H H11 EDO . . . B 2 -40.807 -14.138 6.241 1 71.42 ? H11 EDO 401 A 1 HETATM 6 H H12 EDO . . . B 2 -41.915 -14.884 5.086 1 71.42 ? H12 EDO 401 A 1 HETATM 7 H HO1 EDO . . . B 2 -39.691 -15.009 4.384 1 59.81 ? HO1 EDO 401 A 1 HETATM 8 H H21 EDO . . . B 2 -41.237 -11.91 5.12 1 67.85 ? H21 EDO 401 A 1 HETATM 9 H H22 EDO . . . B 2 -42.659 -12.613 5.904 1 67.85 ? H22 EDO 401 A 1 HETATM 10 H HO2 EDO . . . B 2 -43.114 -11.882 3.737 1 85.07 ? HO2 EDO 401 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 10 #