data_5LLT # _model_server_result.job_id mTRr19nh19mKOXFPZNCbXQ _model_server_result.datetime_utc '2024-11-07 18:53:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5llt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 5LLT # _exptl.entry_id 5LLT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 665.418 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICOTINIC ACID ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 93.94 _cell.angle_beta 90 _cell.angle_gamma 109.85 _cell.entry_id 5LLT _cell.length_a 38.97 _cell.length_b 52.11 _cell.length_c 61.25 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LLT _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,P 1 1 B,J,K,L,M,N,O,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 J N N # _chem_comp.formula 'C21 H27 N6 O15 P2 1' _chem_comp.formula_weight 665.418 _chem_comp.id DND _chem_comp.mon_nstd_flag . _chem_comp.name 'NICOTINIC ACID ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms DEAMIDO-NAD+ # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O13 PA DND doub 83 n n O14 PA DND sing 84 n n PA O3P DND sing 85 n n PA O5B DND sing 86 n n O11 PN DND doub 87 n n O3P PN DND sing 88 n n O5B C5B DND sing 89 n n PN O12 DND sing 90 n n PN O5D DND sing 91 n n C5B C4B DND sing 92 n n N7A C8A DND doub 93 n y N7A C5A DND sing 94 n y C8A N9A DND sing 95 n y N6A C6A DND sing 96 n n O5D C5D DND sing 97 n n C5A C6A DND sing 98 n y C5A C4A DND doub 99 n y O4B C4B DND sing 100 n n O4B C1B DND sing 101 n n C6A N1A DND doub 102 n y C4B C3B DND sing 103 n n N9A C4A DND sing 104 n y N9A C1B DND sing 105 n n C5D C4D DND sing 106 n n C3D O3D DND sing 107 n n C3D C4D DND sing 108 n n C3D C2D DND sing 109 n n C4A N3A DND sing 110 n y C1B C2B DND sing 111 n n N1A C2A DND sing 112 n y C4D O4D DND sing 113 n n C2B C3B DND sing 114 n n C2B O2B DND sing 115 n n C2D O2D DND sing 116 n n C2D C1D DND sing 117 n n C3B O3B DND sing 118 n n N3A C2A DND doub 119 n y O4D C1D DND sing 120 n n C1D N1N DND sing 121 n n C6N N1N DND doub 122 n y C6N C5N DND sing 123 n y N1N C2N DND sing 124 n y C5N C4N DND doub 125 n y C2N C3N DND doub 126 n y C4N C3N DND sing 127 n y C3N C7N DND sing 128 n n C7N O7N DND doub 129 n n C7N O8N DND sing 130 n n O12 H1 DND sing 131 n n C5D H2 DND sing 132 n n C5D H3 DND sing 133 n n C4D H4 DND sing 134 n n C3D H5 DND sing 135 n n O3D H6 DND sing 136 n n C2D H7 DND sing 137 n n O2D H8 DND sing 138 n n C1D H9 DND sing 139 n n C6N H10 DND sing 140 n n C5N H11 DND sing 141 n n C4N H12 DND sing 142 n n C2N H13 DND sing 143 n n O8N H14 DND sing 144 n n O14 H15 DND sing 145 n n C5B H16 DND sing 146 n n C5B H17 DND sing 147 n n C4B H18 DND sing 148 n n C3B H19 DND sing 149 n n O3B H20 DND sing 150 n n C2B H21 DND sing 151 n n O2B H22 DND sing 152 n n C1B H23 DND sing 153 n n C2A H24 DND sing 154 n n C8A H25 DND sing 155 n n N6A H26 DND sing 156 n n N6A H27 DND sing 157 n n # _atom_sites.entry_id 5LLT _atom_sites.fract_transf_matrix[1][1] 0.025661 _atom_sites.fract_transf_matrix[1][2] 0.009265 _atom_sites.fract_transf_matrix[1][3] 0.00068 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020403 _atom_sites.fract_transf_matrix[2][3] 0.001494 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01637 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DND A 1 301 301 DND DND . D 3 PEG A 1 302 302 PEG PEG . E 4 EDO A 1 303 303 EDO EDO . F 4 EDO A 1 304 304 EDO EDO . G 4 EDO A 1 305 305 EDO EDO . H 4 EDO A 1 306 306 EDO EDO . I 4 EDO A 1 307 303 EDO EDO . J 2 DND B 1 301 301 DND DND . K 3 PEG B 1 302 302 PEG PEG . L 4 EDO B 1 303 304 EDO EDO . M 4 EDO B 1 304 305 EDO EDO . N 4 EDO B 1 305 306 EDO EDO . O 4 EDO B 1 306 307 EDO EDO . P 5 HOH A 1 401 405 HOH HOH . P 5 HOH A 2 402 466 HOH HOH . P 5 HOH A 3 403 406 HOH HOH . P 5 HOH A 4 404 418 HOH HOH . P 5 HOH A 5 405 411 HOH HOH . P 5 HOH A 6 406 404 HOH HOH . P 5 HOH A 7 407 432 HOH HOH . P 5 HOH A 8 408 425 HOH HOH . P 5 HOH A 9 409 414 HOH HOH . P 5 HOH A 10 410 419 HOH HOH . P 5 HOH A 11 411 454 HOH HOH . P 5 HOH A 12 412 424 HOH HOH . P 5 HOH A 13 413 409 HOH HOH . P 5 HOH A 14 414 434 HOH HOH . P 5 HOH A 15 415 433 HOH HOH . P 5 HOH A 16 416 416 HOH HOH . P 5 HOH A 17 417 423 HOH HOH . P 5 HOH A 18 418 458 HOH HOH . P 5 HOH A 19 419 426 HOH HOH . P 5 HOH A 20 420 435 HOH HOH . P 5 HOH A 21 421 438 HOH HOH . P 5 HOH A 22 422 431 HOH HOH . P 5 HOH A 23 423 420 HOH HOH . P 5 HOH A 24 424 422 HOH HOH . P 5 HOH A 25 425 421 HOH HOH . P 5 HOH A 26 426 417 HOH HOH . P 5 HOH A 27 427 413 HOH HOH . P 5 HOH A 28 428 428 HOH HOH . P 5 HOH A 29 429 464 HOH HOH . P 5 HOH A 30 430 410 HOH HOH . P 5 HOH A 31 431 415 HOH HOH . P 5 HOH A 32 432 448 HOH HOH . P 5 HOH A 33 433 457 HOH HOH . P 5 HOH A 34 434 451 HOH HOH . P 5 HOH A 35 435 453 HOH HOH . P 5 HOH A 36 436 427 HOH HOH . P 5 HOH A 37 437 446 HOH HOH . P 5 HOH A 38 438 449 HOH HOH . P 5 HOH A 39 439 441 HOH HOH . P 5 HOH A 40 440 439 HOH HOH . P 5 HOH A 41 441 450 HOH HOH . P 5 HOH A 42 442 403 HOH HOH . P 5 HOH A 43 443 447 HOH HOH . P 5 HOH A 44 444 430 HOH HOH . P 5 HOH A 45 445 412 HOH HOH . P 5 HOH A 46 446 447 HOH HOH . P 5 HOH A 47 447 452 HOH HOH . P 5 HOH A 48 448 429 HOH HOH . P 5 HOH A 49 449 463 HOH HOH . P 5 HOH A 50 450 473 HOH HOH . P 5 HOH A 51 451 467 HOH HOH . P 5 HOH A 52 452 456 HOH HOH . P 5 HOH A 53 453 440 HOH HOH . P 5 HOH A 54 454 442 HOH HOH . P 5 HOH A 55 455 436 HOH HOH . P 5 HOH A 56 456 445 HOH HOH . P 5 HOH A 57 457 437 HOH HOH . P 5 HOH A 58 458 459 HOH HOH . P 5 HOH A 59 459 444 HOH HOH . P 5 HOH A 60 460 469 HOH HOH . P 5 HOH A 61 461 455 HOH HOH . P 5 HOH A 62 462 470 HOH HOH . P 5 HOH A 63 463 465 HOH HOH . P 5 HOH A 64 464 484 HOH HOH . P 5 HOH A 65 465 476 HOH HOH . P 5 HOH A 66 466 472 HOH HOH . P 5 HOH A 67 467 485 HOH HOH . P 5 HOH A 68 468 475 HOH HOH . P 5 HOH A 69 469 486 HOH HOH . P 5 HOH A 70 470 480 HOH HOH . P 5 HOH A 71 471 488 HOH HOH . P 5 HOH A 72 472 478 HOH HOH . P 5 HOH A 73 473 477 HOH HOH . P 5 HOH A 74 474 489 HOH HOH . P 5 HOH A 75 475 482 HOH HOH . P 5 HOH A 76 476 407 HOH HOH . P 5 HOH A 77 477 483 HOH HOH . Q 5 HOH B 1 401 409 HOH HOH . Q 5 HOH B 2 402 423 HOH HOH . Q 5 HOH B 3 403 405 HOH HOH . Q 5 HOH B 4 404 406 HOH HOH . Q 5 HOH B 5 405 461 HOH HOH . Q 5 HOH B 6 406 457 HOH HOH . Q 5 HOH B 7 407 408 HOH HOH . Q 5 HOH B 8 408 413 HOH HOH . Q 5 HOH B 9 409 404 HOH HOH . Q 5 HOH B 10 410 410 HOH HOH . Q 5 HOH B 11 411 466 HOH HOH . Q 5 HOH B 12 412 435 HOH HOH . Q 5 HOH B 13 413 407 HOH HOH . Q 5 HOH B 14 414 416 HOH HOH . Q 5 HOH B 15 415 445 HOH HOH . Q 5 HOH B 16 416 425 HOH HOH . Q 5 HOH B 17 417 448 HOH HOH . Q 5 HOH B 18 418 424 HOH HOH . Q 5 HOH B 19 419 417 HOH HOH . Q 5 HOH B 20 420 433 HOH HOH . Q 5 HOH B 21 421 473 HOH HOH . Q 5 HOH B 22 422 422 HOH HOH . Q 5 HOH B 23 423 420 HOH HOH . Q 5 HOH B 24 424 415 HOH HOH . Q 5 HOH B 25 425 487 HOH HOH . Q 5 HOH B 26 426 411 HOH HOH . Q 5 HOH B 27 427 432 HOH HOH . Q 5 HOH B 28 428 436 HOH HOH . Q 5 HOH B 29 429 441 HOH HOH . Q 5 HOH B 30 430 412 HOH HOH . Q 5 HOH B 31 431 419 HOH HOH . Q 5 HOH B 32 432 431 HOH HOH . Q 5 HOH B 33 433 430 HOH HOH . Q 5 HOH B 34 434 428 HOH HOH . Q 5 HOH B 35 435 418 HOH HOH . Q 5 HOH B 36 436 467 HOH HOH . Q 5 HOH B 37 437 402 HOH HOH . Q 5 HOH B 38 438 444 HOH HOH . Q 5 HOH B 39 439 450 HOH HOH . Q 5 HOH B 40 440 439 HOH HOH . Q 5 HOH B 41 441 429 HOH HOH . Q 5 HOH B 42 442 460 HOH HOH . Q 5 HOH B 43 443 442 HOH HOH . Q 5 HOH B 44 444 452 HOH HOH . Q 5 HOH B 45 445 451 HOH HOH . Q 5 HOH B 46 446 484 HOH HOH . Q 5 HOH B 47 447 426 HOH HOH . Q 5 HOH B 48 448 449 HOH HOH . Q 5 HOH B 49 449 453 HOH HOH . Q 5 HOH B 50 450 437 HOH HOH . Q 5 HOH B 51 451 443 HOH HOH . Q 5 HOH B 52 452 440 HOH HOH . Q 5 HOH B 53 453 465 HOH HOH . Q 5 HOH B 54 454 446 HOH HOH . Q 5 HOH B 55 455 455 HOH HOH . Q 5 HOH B 56 456 475 HOH HOH . Q 5 HOH B 57 457 470 HOH HOH . Q 5 HOH B 58 458 472 HOH HOH . Q 5 HOH B 59 459 427 HOH HOH . Q 5 HOH B 60 460 461 HOH HOH . Q 5 HOH B 61 461 471 HOH HOH . Q 5 HOH B 62 462 469 HOH HOH . Q 5 HOH B 63 463 471 HOH HOH . Q 5 HOH B 64 464 483 HOH HOH . Q 5 HOH B 65 465 464 HOH HOH . Q 5 HOH B 66 466 474 HOH HOH . Q 5 HOH B 67 467 454 HOH HOH . Q 5 HOH B 68 468 458 HOH HOH . Q 5 HOH B 69 469 468 HOH HOH . Q 5 HOH B 70 470 477 HOH HOH . Q 5 HOH B 71 471 421 HOH HOH . Q 5 HOH B 72 472 414 HOH HOH . Q 5 HOH B 73 473 478 HOH HOH . Q 5 HOH B 74 474 482 HOH HOH . Q 5 HOH B 75 475 485 HOH HOH . Q 5 HOH B 76 476 480 HOH HOH . Q 5 HOH B 77 477 481 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PN DND . . . C 2 20.28 -2.35 -12.381 1 24.77 ? PN DND 301 A 1 HETATM 2 O O11 DND . . . C 2 20.272 -2.381 -10.832 1 34.7 ? O11 DND 301 A 1 HETATM 3 O O12 DND . . . C 2 20.651 -3.697 -12.942 1 25.8 ? O12 DND 301 A 1 HETATM 4 O O3P DND . . . C 2 18.791 -1.821 -12.853 1 28.55 ? O3P DND 301 A 1 HETATM 5 O O5D DND . . . C 2 21.312 -1.193 -12.89 1 23.08 ? O5D DND 301 A 1 HETATM 6 C C5D DND . . . C 2 20.95 0.132 -12.75 1 19.63 ? C5D DND 301 A 1 HETATM 7 C C4D DND . . . C 2 22.153 0.996 -13.013 1 20.06 ? C4D DND 301 A 1 HETATM 8 O O4D DND . . . C 2 23.064 0.85 -12.088 1 21.4 ? O4D DND 301 A 1 HETATM 9 C C3D DND . . . C 2 22.885 0.515 -14.419 1 25.45 ? C3D DND 301 A 1 HETATM 10 O O3D DND . . . C 2 22.645 1.588 -15.404 1 22.05 ? O3D DND 301 A 1 HETATM 11 C C2D DND . . . C 2 24.091 0.29 -14.116 1 22.77 ? C2D DND 301 A 1 HETATM 12 O O2D DND . . . C 2 25.051 0.763 -15.151 1 28.3 ? O2D DND 301 A 1 HETATM 13 C C1D DND . . . C 2 24.37 1.115 -12.76 1 26.1 ? C1D DND 301 A 1 HETATM 14 N N1N DND . . . C 2 25.426 0.627 -12.096 1 24.65 ? N1N DND 301 A 1 HETATM 15 C C6N DND . . . C 2 25.312 -0.537 -11.438 1 25.31 ? C6N DND 301 A 1 HETATM 16 C C5N DND . . . C 2 26.412 -1.072 -10.771 1 30.93 ? C5N DND 301 A 1 HETATM 17 C C4N DND . . . C 2 27.615 -0.432 -10.773 1 26.22 ? C4N DND 301 A 1 HETATM 18 C C3N DND . . . C 2 27.742 0.739 -11.434 1 24.74 ? C3N DND 301 A 1 HETATM 19 C C2N DND . . . C 2 26.631 1.262 -12.106 1 23.62 ? C2N DND 301 A 1 HETATM 20 C C7N DND . . . C 2 29.065 1.436 -11.404 1 26.06 ? C7N DND 301 A 1 HETATM 21 O O7N DND . . . C 2 29.228 2.564 -11.952 1 25.17 ? O7N DND 301 A 1 HETATM 22 O O8N DND . . . C 2 30.045 0.939 -10.805 1 28.54 ? O8N DND 301 A 1 HETATM 23 P PA DND . . . C 2 17.415 -2.658 -13.148 1 23.28 ? PA DND 301 A 1 HETATM 24 O O13 DND . . . C 2 17.275 -3.816 -12.138 1 29.61 ? O13 DND 301 A 1 HETATM 25 O O14 DND . . . C 2 17.451 -3.084 -14.577 1 23.23 ? O14 DND 301 A 1 HETATM 26 O O5B DND . . . C 2 16.317 -1.483 -13.022 1 23 ? O5B DND 301 A 1 HETATM 27 C C5B DND . . . C 2 16.743 -0.324 -13.768 1 20.05 ? C5B DND 301 A 1 HETATM 28 C C4B DND . . . C 2 16.298 0.97 -13.108 1 20.55 ? C4B DND 301 A 1 HETATM 29 O O4B DND . . . C 2 15.004 0.932 -12.914 1 21.13 ? O4B DND 301 A 1 HETATM 30 C C3B DND . . . C 2 16.972 1.076 -11.698 1 23.75 ? C3B DND 301 A 1 HETATM 31 O O3B DND . . . C 2 17.321 2.379 -11.505 1 21.81 ? O3B DND 301 A 1 HETATM 32 C C2B DND . . . C 2 15.842 0.64 -10.788 1 24.56 ? C2B DND 301 A 1 HETATM 33 O O2B DND . . . C 2 16.053 1.161 -9.401 1 20.64 ? O2B DND 301 A 1 HETATM 34 C C1B DND . . . C 2 14.707 1.109 -11.371 1 19.88 ? C1B DND 301 A 1 HETATM 35 N N9A DND . . . C 2 13.645 0.253 -10.936 1 22 ? N9A DND 301 A 1 HETATM 36 C C4A DND . . . C 2 12.596 0.67 -10.192 1 19.86 ? C4A DND 301 A 1 HETATM 37 N N3A DND . . . C 2 12.213 1.88 -9.739 1 18.49 ? N3A DND 301 A 1 HETATM 38 C C2A DND . . . C 2 11.061 2.015 -9.013 1 19.46 ? C2A DND 301 A 1 HETATM 39 N N1A DND . . . C 2 10.311 0.931 -8.732 1 20.22 ? N1A DND 301 A 1 HETATM 40 C C6A DND . . . C 2 10.698 -0.278 -9.176 1 24.19 ? C6A DND 301 A 1 HETATM 41 C C5A DND . . . C 2 11.856 -0.412 -9.924 1 23.98 ? C5A DND 301 A 1 HETATM 42 N N7A DND . . . C 2 12.447 -1.491 -10.488 1 21.74 ? N7A DND 301 A 1 HETATM 43 C C8A DND . . . C 2 13.568 -1.071 -11.115 1 22.84 ? C8A DND 301 A 1 HETATM 44 N N6A DND . . . C 2 9.649 -1.051 -8.653 1 22.24 ? N6A DND 301 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 44 #