data_5LLT
#
_model_server_result.job_id            aJ3utSt9wIqShQfKJMQKhQ 
_model_server_result.datetime_utc      '2024-11-27 09:06:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5llt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":305}' 
#
_entry.id    5LLT 
#
_exptl.entry_id    5LLT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         93.94 
_cell.angle_beta          90 
_cell.angle_gamma         109.85 
_cell.entry_id            5LLT 
_cell.length_a            38.97 
_cell.length_b            52.11 
_cell.length_c            61.25 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5LLT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,P 1 1 
B,J,K,L,M,N,O,Q 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 F N N 
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 L N N 
? 4 M N N 
? 4 N N N 
? 4 O N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 158 n n 
C1 C2 EDO sing 159 n n 
C1 H11 EDO sing 160 n n 
C1 H12 EDO sing 161 n n 
O1 HO1 EDO sing 162 n n 
C2 O2 EDO sing 163 n n 
C2 H21 EDO sing 164 n n 
C2 H22 EDO sing 165 n n 
O2 HO2 EDO sing 166 n n 
#
_atom_sites.entry_id                     5LLT 
_atom_sites.fract_transf_matrix[1][1]    0.025661 
_atom_sites.fract_transf_matrix[1][2]    0.009265 
_atom_sites.fract_transf_matrix[1][3]    0.00068 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020403 
_atom_sites.fract_transf_matrix[2][3]    0.001494 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01637 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 DND A 1 301 301 DND DND . 
D 3 PEG A 1 302 302 PEG PEG . 
E 4 EDO A 1 303 303 EDO EDO . 
F 4 EDO A 1 304 304 EDO EDO . 
G 4 EDO A 1 305 305 EDO EDO . 
H 4 EDO A 1 306 306 EDO EDO . 
I 4 EDO A 1 307 303 EDO EDO . 
J 2 DND B 1 301 301 DND DND . 
K 3 PEG B 1 302 302 PEG PEG . 
L 4 EDO B 1 303 304 EDO EDO . 
M 4 EDO B 1 304 305 EDO EDO . 
N 4 EDO B 1 305 306 EDO EDO . 
O 4 EDO B 1 306 307 EDO EDO . 
P 5 HOH A 1 401 405 HOH HOH . 
P 5 HOH A 2 402 466 HOH HOH . 
P 5 HOH A 3 403 406 HOH HOH . 
P 5 HOH A 4 404 418 HOH HOH . 
P 5 HOH A 5 405 411 HOH HOH . 
P 5 HOH A 6 406 404 HOH HOH . 
P 5 HOH A 7 407 432 HOH HOH . 
P 5 HOH A 8 408 425 HOH HOH . 
P 5 HOH A 9 409 414 HOH HOH . 
P 5 HOH A 10 410 419 HOH HOH . 
P 5 HOH A 11 411 454 HOH HOH . 
P 5 HOH A 12 412 424 HOH HOH . 
P 5 HOH A 13 413 409 HOH HOH . 
P 5 HOH A 14 414 434 HOH HOH . 
P 5 HOH A 15 415 433 HOH HOH . 
P 5 HOH A 16 416 416 HOH HOH . 
P 5 HOH A 17 417 423 HOH HOH . 
P 5 HOH A 18 418 458 HOH HOH . 
P 5 HOH A 19 419 426 HOH HOH . 
P 5 HOH A 20 420 435 HOH HOH . 
P 5 HOH A 21 421 438 HOH HOH . 
P 5 HOH A 22 422 431 HOH HOH . 
P 5 HOH A 23 423 420 HOH HOH . 
P 5 HOH A 24 424 422 HOH HOH . 
P 5 HOH A 25 425 421 HOH HOH . 
P 5 HOH A 26 426 417 HOH HOH . 
P 5 HOH A 27 427 413 HOH HOH . 
P 5 HOH A 28 428 428 HOH HOH . 
P 5 HOH A 29 429 464 HOH HOH . 
P 5 HOH A 30 430 410 HOH HOH . 
P 5 HOH A 31 431 415 HOH HOH . 
P 5 HOH A 32 432 448 HOH HOH . 
P 5 HOH A 33 433 457 HOH HOH . 
P 5 HOH A 34 434 451 HOH HOH . 
P 5 HOH A 35 435 453 HOH HOH . 
P 5 HOH A 36 436 427 HOH HOH . 
P 5 HOH A 37 437 446 HOH HOH . 
P 5 HOH A 38 438 449 HOH HOH . 
P 5 HOH A 39 439 441 HOH HOH . 
P 5 HOH A 40 440 439 HOH HOH . 
P 5 HOH A 41 441 450 HOH HOH . 
P 5 HOH A 42 442 403 HOH HOH . 
P 5 HOH A 43 443 447 HOH HOH . 
P 5 HOH A 44 444 430 HOH HOH . 
P 5 HOH A 45 445 412 HOH HOH . 
P 5 HOH A 46 446 447 HOH HOH . 
P 5 HOH A 47 447 452 HOH HOH . 
P 5 HOH A 48 448 429 HOH HOH . 
P 5 HOH A 49 449 463 HOH HOH . 
P 5 HOH A 50 450 473 HOH HOH . 
P 5 HOH A 51 451 467 HOH HOH . 
P 5 HOH A 52 452 456 HOH HOH . 
P 5 HOH A 53 453 440 HOH HOH . 
P 5 HOH A 54 454 442 HOH HOH . 
P 5 HOH A 55 455 436 HOH HOH . 
P 5 HOH A 56 456 445 HOH HOH . 
P 5 HOH A 57 457 437 HOH HOH . 
P 5 HOH A 58 458 459 HOH HOH . 
P 5 HOH A 59 459 444 HOH HOH . 
P 5 HOH A 60 460 469 HOH HOH . 
P 5 HOH A 61 461 455 HOH HOH . 
P 5 HOH A 62 462 470 HOH HOH . 
P 5 HOH A 63 463 465 HOH HOH . 
P 5 HOH A 64 464 484 HOH HOH . 
P 5 HOH A 65 465 476 HOH HOH . 
P 5 HOH A 66 466 472 HOH HOH . 
P 5 HOH A 67 467 485 HOH HOH . 
P 5 HOH A 68 468 475 HOH HOH . 
P 5 HOH A 69 469 486 HOH HOH . 
P 5 HOH A 70 470 480 HOH HOH . 
P 5 HOH A 71 471 488 HOH HOH . 
P 5 HOH A 72 472 478 HOH HOH . 
P 5 HOH A 73 473 477 HOH HOH . 
P 5 HOH A 74 474 489 HOH HOH . 
P 5 HOH A 75 475 482 HOH HOH . 
P 5 HOH A 76 476 407 HOH HOH . 
P 5 HOH A 77 477 483 HOH HOH . 
Q 5 HOH B 1 401 409 HOH HOH . 
Q 5 HOH B 2 402 423 HOH HOH . 
Q 5 HOH B 3 403 405 HOH HOH . 
Q 5 HOH B 4 404 406 HOH HOH . 
Q 5 HOH B 5 405 461 HOH HOH . 
Q 5 HOH B 6 406 457 HOH HOH . 
Q 5 HOH B 7 407 408 HOH HOH . 
Q 5 HOH B 8 408 413 HOH HOH . 
Q 5 HOH B 9 409 404 HOH HOH . 
Q 5 HOH B 10 410 410 HOH HOH . 
Q 5 HOH B 11 411 466 HOH HOH . 
Q 5 HOH B 12 412 435 HOH HOH . 
Q 5 HOH B 13 413 407 HOH HOH . 
Q 5 HOH B 14 414 416 HOH HOH . 
Q 5 HOH B 15 415 445 HOH HOH . 
Q 5 HOH B 16 416 425 HOH HOH . 
Q 5 HOH B 17 417 448 HOH HOH . 
Q 5 HOH B 18 418 424 HOH HOH . 
Q 5 HOH B 19 419 417 HOH HOH . 
Q 5 HOH B 20 420 433 HOH HOH . 
Q 5 HOH B 21 421 473 HOH HOH . 
Q 5 HOH B 22 422 422 HOH HOH . 
Q 5 HOH B 23 423 420 HOH HOH . 
Q 5 HOH B 24 424 415 HOH HOH . 
Q 5 HOH B 25 425 487 HOH HOH . 
Q 5 HOH B 26 426 411 HOH HOH . 
Q 5 HOH B 27 427 432 HOH HOH . 
Q 5 HOH B 28 428 436 HOH HOH . 
Q 5 HOH B 29 429 441 HOH HOH . 
Q 5 HOH B 30 430 412 HOH HOH . 
Q 5 HOH B 31 431 419 HOH HOH . 
Q 5 HOH B 32 432 431 HOH HOH . 
Q 5 HOH B 33 433 430 HOH HOH . 
Q 5 HOH B 34 434 428 HOH HOH . 
Q 5 HOH B 35 435 418 HOH HOH . 
Q 5 HOH B 36 436 467 HOH HOH . 
Q 5 HOH B 37 437 402 HOH HOH . 
Q 5 HOH B 38 438 444 HOH HOH . 
Q 5 HOH B 39 439 450 HOH HOH . 
Q 5 HOH B 40 440 439 HOH HOH . 
Q 5 HOH B 41 441 429 HOH HOH . 
Q 5 HOH B 42 442 460 HOH HOH . 
Q 5 HOH B 43 443 442 HOH HOH . 
Q 5 HOH B 44 444 452 HOH HOH . 
Q 5 HOH B 45 445 451 HOH HOH . 
Q 5 HOH B 46 446 484 HOH HOH . 
Q 5 HOH B 47 447 426 HOH HOH . 
Q 5 HOH B 48 448 449 HOH HOH . 
Q 5 HOH B 49 449 453 HOH HOH . 
Q 5 HOH B 50 450 437 HOH HOH . 
Q 5 HOH B 51 451 443 HOH HOH . 
Q 5 HOH B 52 452 440 HOH HOH . 
Q 5 HOH B 53 453 465 HOH HOH . 
Q 5 HOH B 54 454 446 HOH HOH . 
Q 5 HOH B 55 455 455 HOH HOH . 
Q 5 HOH B 56 456 475 HOH HOH . 
Q 5 HOH B 57 457 470 HOH HOH . 
Q 5 HOH B 58 458 472 HOH HOH . 
Q 5 HOH B 59 459 427 HOH HOH . 
Q 5 HOH B 60 460 461 HOH HOH . 
Q 5 HOH B 61 461 471 HOH HOH . 
Q 5 HOH B 62 462 469 HOH HOH . 
Q 5 HOH B 63 463 471 HOH HOH . 
Q 5 HOH B 64 464 483 HOH HOH . 
Q 5 HOH B 65 465 464 HOH HOH . 
Q 5 HOH B 66 466 474 HOH HOH . 
Q 5 HOH B 67 467 454 HOH HOH . 
Q 5 HOH B 68 468 458 HOH HOH . 
Q 5 HOH B 69 469 468 HOH HOH . 
Q 5 HOH B 70 470 477 HOH HOH . 
Q 5 HOH B 71 471 421 HOH HOH . 
Q 5 HOH B 72 472 414 HOH HOH . 
Q 5 HOH B 73 473 478 HOH HOH . 
Q 5 HOH B 74 474 482 HOH HOH . 
Q 5 HOH B 75 475 485 HOH HOH . 
Q 5 HOH B 76 476 480 HOH HOH . 
Q 5 HOH B 77 477 481 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . N 4 20.527 10.542 -47.111 1 35.51 ? C1 EDO 305 B 1 
HETATM 2 O O1 EDO . . . N 4 19.227 11.013 -46.728 1 43.34 ? O1 EDO 305 B 1 
HETATM 3 C C2 EDO . . . N 4 20.775 10.938 -48.564 1 31.11 ? C2 EDO 305 B 1 
HETATM 4 O O2 EDO . . . N 4 20.422 12.318 -48.695 1 37.82 ? O2 EDO 305 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           4 
#