data_5LM3 # _model_server_result.job_id '_j07nfqbxx_4xc2DJp4DSA' _model_server_result.datetime_utc '2024-12-01 07:29:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5lm3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 5LM3 # _exptl.entry_id 5LM3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 113.54 _cell.angle_gamma 90 _cell.entry_id 5LM3 _cell.length_a 55.24 _cell.length_b 38.92 _cell.length_c 62.71 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LM3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 134 n n C1 C2 EDO sing 135 n n C1 H11 EDO sing 136 n n C1 H12 EDO sing 137 n n O1 HO1 EDO sing 138 n n C2 O2 EDO sing 139 n n C2 H21 EDO sing 140 n n C2 H22 EDO sing 141 n n O2 HO2 EDO sing 142 n n # _atom_sites.entry_id 5LM3 _atom_sites.fract_transf_matrix[1][1] 0.018103 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007885 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025694 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017394 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 APC A 1 501 501 APC APC . C 3 EDO A 1 502 506 EDO EDO . D 4 HOH A 1 601 601 HOH HOH . D 4 HOH A 2 602 602 HOH HOH . D 4 HOH A 3 603 609 HOH HOH . D 4 HOH A 4 604 608 HOH HOH . D 4 HOH A 5 605 606 HOH HOH . D 4 HOH A 6 606 604 HOH HOH . D 4 HOH A 7 607 613 HOH HOH . D 4 HOH A 8 608 611 HOH HOH . D 4 HOH A 9 609 616 HOH HOH . D 4 HOH A 10 610 619 HOH HOH . D 4 HOH A 11 611 637 HOH HOH . D 4 HOH A 12 612 615 HOH HOH . D 4 HOH A 13 613 614 HOH HOH . D 4 HOH A 14 614 622 HOH HOH . D 4 HOH A 15 615 618 HOH HOH . D 4 HOH A 16 616 635 HOH HOH . D 4 HOH A 17 617 638 HOH HOH . D 4 HOH A 18 618 617 HOH HOH . D 4 HOH A 19 619 620 HOH HOH . D 4 HOH A 20 620 621 HOH HOH . D 4 HOH A 21 621 610 HOH HOH . D 4 HOH A 22 622 632 HOH HOH . D 4 HOH A 23 623 629 HOH HOH . D 4 HOH A 24 624 626 HOH HOH . D 4 HOH A 25 625 612 HOH HOH . D 4 HOH A 26 626 625 HOH HOH . D 4 HOH A 27 627 623 HOH HOH . D 4 HOH A 28 628 627 HOH HOH . D 4 HOH A 29 629 631 HOH HOH . D 4 HOH A 30 630 624 HOH HOH . D 4 HOH A 31 631 605 HOH HOH . D 4 HOH A 32 632 633 HOH HOH . D 4 HOH A 33 633 636 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . C 3 -2.487 -30.596 -12.296 1 53.17 ? C1 EDO 502 A 1 HETATM 2 O O1 EDO . . . C 3 -3.195 -31.155 -11.184 1 61.03 ? O1 EDO 502 A 1 HETATM 3 C C2 EDO . . . C 3 -3.428 -29.708 -13.102 1 63.88 ? C2 EDO 502 A 1 HETATM 4 O O2 EDO . . . C 3 -3.938 -28.663 -12.266 1 73.97 ? O2 EDO 502 A 1 # _model_server_stats.io_time_ms 108 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #