data_5LMF
#
_model_server_result.job_id            fLVS9367woYBV_LktQsmJA 
_model_server_result.datetime_utc      '2024-10-20 01:27:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5lmf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":806}' 
#
_entry.id    5LMF 
#
_exptl.entry_id    5LMF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5LMF 
_cell.length_a            98.36 
_cell.length_b            122.92 
_cell.length_c            126.97 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5LMF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,G,H,I,Q,S 1 1 
B,C,J,K,L,M,N,O,P,R 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 G N N 
? 5 H N N 
? 5 I N N 
? 5 K N N 
? 5 L N N 
? 5 M N N 
? 5 N N N 
? 5 O N N 
? 5 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 117 A ASP 544 1_555 E MG MG . A MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? 
metalc ? metalc2 A OD2 ASP 117 A ASP 544 1_555 E MG MG . A MG 1001 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? 
metalc ? metalc3 E MG MG . A MG 1001 1_555 Q O HOH . A HOH 1147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? 
metalc ? metalc4 E MG MG . A MG 1001 1_555 Q O HOH . A HOH 1147 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? 
metalc ? metalc5 E MG MG . A MG 1001 1_555 Q O HOH . A HOH 1174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? 
metalc ? metalc6 E MG MG . A MG 1001 1_555 Q O HOH . A HOH 1174 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 70 n n 
C1 C2 EDO sing 71 n n 
C1 H11 EDO sing 72 n n 
C1 H12 EDO sing 73 n n 
O1 HO1 EDO sing 74 n n 
C2 O2 EDO sing 75 n n 
C2 H21 EDO sing 76 n n 
C2 H22 EDO sing 77 n n 
O2 HO2 EDO sing 78 n n 
#
_atom_sites.entry_id                     5LMF 
_atom_sites.fract_transf_matrix[1][1]    0.010167 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008135 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007876 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 MG A 1 1001 1001 MG MG . 
F 4 CL A 1 1002 2 CL CL . 
G 5 EDO A 1 1003 4 EDO EDO . 
H 5 EDO A 1 1004 6 EDO EDO . 
I 5 EDO A 1 1005 8 EDO EDO . 
J 4 CL B 1 801 1 CL CL . 
K 5 EDO B 1 802 1 EDO EDO . 
L 5 EDO B 1 803 2 EDO EDO . 
M 5 EDO B 1 804 3 EDO EDO . 
N 5 EDO B 1 805 5 EDO EDO . 
O 5 EDO B 1 806 7 EDO EDO . 
P 5 EDO B 1 807 9 EDO EDO . 
Q 6 HOH A 1 1101 42 HOH HOH . 
Q 6 HOH A 2 1102 73 HOH HOH . 
Q 6 HOH A 3 1103 18 HOH HOH . 
Q 6 HOH A 4 1104 57 HOH HOH . 
Q 6 HOH A 5 1105 7 HOH HOH . 
Q 6 HOH A 6 1106 33 HOH HOH . 
Q 6 HOH A 7 1107 71 HOH HOH . 
Q 6 HOH A 8 1108 14 HOH HOH . 
Q 6 HOH A 9 1109 8 HOH HOH . 
Q 6 HOH A 10 1110 62 HOH HOH . 
Q 6 HOH A 11 1111 13 HOH HOH . 
Q 6 HOH A 12 1112 47 HOH HOH . 
Q 6 HOH A 13 1113 43 HOH HOH . 
Q 6 HOH A 14 1114 17 HOH HOH . 
Q 6 HOH A 15 1115 58 HOH HOH . 
Q 6 HOH A 16 1116 131 HOH HOH . 
Q 6 HOH A 17 1117 51 HOH HOH . 
Q 6 HOH A 18 1118 91 HOH HOH . 
Q 6 HOH A 19 1119 77 HOH HOH . 
Q 6 HOH A 20 1120 116 HOH HOH . 
Q 6 HOH A 21 1121 127 HOH HOH . 
Q 6 HOH A 22 1122 37 HOH HOH . 
Q 6 HOH A 23 1123 111 HOH HOH . 
Q 6 HOH A 24 1124 2 HOH HOH . 
Q 6 HOH A 25 1125 142 HOH HOH . 
Q 6 HOH A 26 1126 16 HOH HOH . 
Q 6 HOH A 27 1127 84 HOH HOH . 
Q 6 HOH A 28 1128 5 HOH HOH . 
Q 6 HOH A 29 1129 40 HOH HOH . 
Q 6 HOH A 30 1130 19 HOH HOH . 
Q 6 HOH A 31 1131 102 HOH HOH . 
Q 6 HOH A 32 1132 44 HOH HOH . 
Q 6 HOH A 33 1133 56 HOH HOH . 
Q 6 HOH A 34 1134 97 HOH HOH . 
Q 6 HOH A 35 1135 1 HOH HOH . 
Q 6 HOH A 36 1136 139 HOH HOH . 
Q 6 HOH A 37 1137 99 HOH HOH . 
Q 6 HOH A 38 1138 101 HOH HOH . 
Q 6 HOH A 39 1139 130 HOH HOH . 
Q 6 HOH A 40 1140 120 HOH HOH . 
Q 6 HOH A 41 1141 68 HOH HOH . 
Q 6 HOH A 42 1142 85 HOH HOH . 
Q 6 HOH A 43 1143 90 HOH HOH . 
Q 6 HOH A 44 1144 117 HOH HOH . 
Q 6 HOH A 45 1145 94 HOH HOH . 
Q 6 HOH A 46 1146 69 HOH HOH . 
Q 6 HOH A 47 1147 133 HOH HOH . 
Q 6 HOH A 48 1148 3 HOH HOH . 
Q 6 HOH A 49 1149 92 HOH HOH . 
Q 6 HOH A 50 1150 81 HOH HOH . 
Q 6 HOH A 51 1151 138 HOH HOH . 
Q 6 HOH A 52 1152 35 HOH HOH . 
Q 6 HOH A 53 1153 125 HOH HOH . 
Q 6 HOH A 54 1154 98 HOH HOH . 
Q 6 HOH A 55 1155 60 HOH HOH . 
Q 6 HOH A 56 1156 123 HOH HOH . 
Q 6 HOH A 57 1157 95 HOH HOH . 
Q 6 HOH A 58 1158 74 HOH HOH . 
Q 6 HOH A 59 1159 119 HOH HOH . 
Q 6 HOH A 60 1160 10 HOH HOH . 
Q 6 HOH A 61 1161 83 HOH HOH . 
Q 6 HOH A 62 1162 31 HOH HOH . 
Q 6 HOH A 63 1163 61 HOH HOH . 
Q 6 HOH A 64 1164 72 HOH HOH . 
Q 6 HOH A 65 1165 132 HOH HOH . 
Q 6 HOH A 66 1166 27 HOH HOH . 
Q 6 HOH A 67 1167 100 HOH HOH . 
Q 6 HOH A 68 1168 107 HOH HOH . 
Q 6 HOH A 69 1169 26 HOH HOH . 
Q 6 HOH A 70 1170 124 HOH HOH . 
Q 6 HOH A 71 1171 15 HOH HOH . 
Q 6 HOH A 72 1172 135 HOH HOH . 
Q 6 HOH A 73 1173 75 HOH HOH . 
Q 6 HOH A 74 1174 141 HOH HOH . 
Q 6 HOH A 75 1175 55 HOH HOH . 
Q 6 HOH A 76 1176 4 HOH HOH . 
Q 6 HOH A 77 1177 121 HOH HOH . 
Q 6 HOH A 78 1178 79 HOH HOH . 
Q 6 HOH A 79 1179 63 HOH HOH . 
Q 6 HOH A 80 1180 137 HOH HOH . 
Q 6 HOH A 81 1181 129 HOH HOH . 
Q 6 HOH A 82 1182 140 HOH HOH . 
R 6 HOH B 1 901 122 HOH HOH . 
R 6 HOH B 2 902 78 HOH HOH . 
R 6 HOH B 3 903 70 HOH HOH . 
R 6 HOH B 4 904 80 HOH HOH . 
R 6 HOH B 5 905 66 HOH HOH . 
R 6 HOH B 6 906 86 HOH HOH . 
R 6 HOH B 7 907 128 HOH HOH . 
R 6 HOH B 8 908 6 HOH HOH . 
R 6 HOH B 9 909 67 HOH HOH . 
R 6 HOH B 10 910 126 HOH HOH . 
R 6 HOH B 11 911 41 HOH HOH . 
R 6 HOH B 12 912 64 HOH HOH . 
R 6 HOH B 13 913 52 HOH HOH . 
R 6 HOH B 14 914 20 HOH HOH . 
R 6 HOH B 15 915 104 HOH HOH . 
R 6 HOH B 16 916 38 HOH HOH . 
R 6 HOH B 17 917 59 HOH HOH . 
R 6 HOH B 18 918 39 HOH HOH . 
R 6 HOH B 19 919 9 HOH HOH . 
R 6 HOH B 20 920 50 HOH HOH . 
R 6 HOH B 21 921 34 HOH HOH . 
R 6 HOH B 22 922 76 HOH HOH . 
R 6 HOH B 23 923 48 HOH HOH . 
R 6 HOH B 24 924 46 HOH HOH . 
R 6 HOH B 25 925 103 HOH HOH . 
R 6 HOH B 26 926 30 HOH HOH . 
R 6 HOH B 27 927 24 HOH HOH . 
R 6 HOH B 28 928 22 HOH HOH . 
R 6 HOH B 29 929 110 HOH HOH . 
R 6 HOH B 30 930 106 HOH HOH . 
R 6 HOH B 31 931 89 HOH HOH . 
R 6 HOH B 32 932 87 HOH HOH . 
R 6 HOH B 33 933 45 HOH HOH . 
R 6 HOH B 34 934 54 HOH HOH . 
R 6 HOH B 35 935 49 HOH HOH . 
R 6 HOH B 36 936 115 HOH HOH . 
R 6 HOH B 37 937 93 HOH HOH . 
R 6 HOH B 38 938 29 HOH HOH . 
R 6 HOH B 39 939 12 HOH HOH . 
R 6 HOH B 40 940 11 HOH HOH . 
R 6 HOH B 41 941 105 HOH HOH . 
R 6 HOH B 42 942 143 HOH HOH . 
R 6 HOH B 43 943 113 HOH HOH . 
R 6 HOH B 44 944 82 HOH HOH . 
R 6 HOH B 45 945 109 HOH HOH . 
R 6 HOH B 46 946 32 HOH HOH . 
R 6 HOH B 47 947 96 HOH HOH . 
R 6 HOH B 48 948 65 HOH HOH . 
R 6 HOH B 49 949 108 HOH HOH . 
R 6 HOH B 50 950 25 HOH HOH . 
R 6 HOH B 51 951 23 HOH HOH . 
R 6 HOH B 52 952 134 HOH HOH . 
R 6 HOH B 53 953 28 HOH HOH . 
R 6 HOH B 54 954 53 HOH HOH . 
R 6 HOH B 55 955 112 HOH HOH . 
R 6 HOH B 56 956 118 HOH HOH . 
R 6 HOH B 57 957 114 HOH HOH . 
R 6 HOH B 58 958 21 HOH HOH . 
S 6 HOH D 1 601 36 HOH HOH . 
S 6 HOH D 2 602 136 HOH HOH . 
S 6 HOH D 3 603 88 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . O 5 35.927 11.054 32.611 1 44.31 ? C1 EDO 806 B 1 
HETATM 2 O O1 EDO . . . O 5 34.795 10.246 32.911 1 41.01 ? O1 EDO 806 B 1 
HETATM 3 C C2 EDO . . . O 5 35.737 11.839 31.317 1 46.71 ? C2 EDO 806 B 1 
HETATM 4 O O2 EDO . . . O 5 34.422 12.414 31.269 1 49.02 ? O2 EDO 806 B 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           266 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           4 
#