data_5LMG # _model_server_result.job_id UUptJTXDAZUY3XVVBOEcrg _model_server_result.datetime_utc '2024-10-19 12:21:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5lmg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":810}' # _entry.id 5LMG # _exptl.entry_id 5LMG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5LMG _cell.length_a 97.686 _cell.length_b 123.029 _cell.length_c 126.562 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LMG _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,I,J,K,L,M,N,O,T 1 1 B,C,P,Q,R,S,U 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id N _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 117 A ASP 544 1_555 N MG MG . A MG 810 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc2 A OD2 ASP 117 A ASP 544 1_555 N MG MG . A MG 810 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc3 N MG MG . A MG 810 1_555 T O HOH . A HOH 969 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc4 N MG MG . A MG 810 1_555 T O HOH . A HOH 969 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc5 N MG MG . A MG 810 1_555 T O HOH . A HOH 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc6 N MG MG . A MG 810 1_555 T O HOH . A HOH 1003 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5LMG _atom_sites.fract_transf_matrix[1][1] 0.010237 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008128 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007901 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 EDO A 1 801 1 EDO EDO . F 3 EDO A 1 802 3 EDO EDO . G 3 EDO A 1 803 4 EDO EDO . H 3 EDO A 1 804 6 EDO EDO . I 3 EDO A 1 805 8 EDO EDO . J 3 EDO A 1 806 9 EDO EDO . K 3 EDO A 1 807 10 EDO EDO . L 3 EDO A 1 808 11 EDO EDO . M 3 EDO A 1 809 13 EDO EDO . N 4 MG A 1 810 1 MG MG . O 5 TRS A 1 811 1 TRS TRS . P 3 EDO B 1 801 2 EDO EDO . Q 3 EDO B 1 802 5 EDO EDO . R 3 EDO B 1 803 7 EDO EDO . S 3 EDO B 1 804 12 EDO EDO . T 6 HOH A 1 901 17 HOH HOH . T 6 HOH A 2 902 124 HOH HOH . T 6 HOH A 3 903 74 HOH HOH . T 6 HOH A 4 904 120 HOH HOH . T 6 HOH A 5 905 53 HOH HOH . T 6 HOH A 6 906 110 HOH HOH . T 6 HOH A 7 907 92 HOH HOH . T 6 HOH A 8 908 86 HOH HOH . T 6 HOH A 9 909 5 HOH HOH . T 6 HOH A 10 910 111 HOH HOH . T 6 HOH A 11 911 178 HOH HOH . T 6 HOH A 12 912 137 HOH HOH . T 6 HOH A 13 913 106 HOH HOH . T 6 HOH A 14 914 166 HOH HOH . T 6 HOH A 15 915 136 HOH HOH . T 6 HOH A 16 916 75 HOH HOH . T 6 HOH A 17 917 63 HOH HOH . T 6 HOH A 18 918 176 HOH HOH . T 6 HOH A 19 919 60 HOH HOH . T 6 HOH A 20 920 165 HOH HOH . T 6 HOH A 21 921 25 HOH HOH . T 6 HOH A 22 922 163 HOH HOH . T 6 HOH A 23 923 50 HOH HOH . T 6 HOH A 24 924 181 HOH HOH . T 6 HOH A 25 925 150 HOH HOH . T 6 HOH A 26 926 84 HOH HOH . T 6 HOH A 27 927 55 HOH HOH . T 6 HOH A 28 928 61 HOH HOH . T 6 HOH A 29 929 73 HOH HOH . T 6 HOH A 30 930 37 HOH HOH . T 6 HOH A 31 931 107 HOH HOH . T 6 HOH A 32 932 22 HOH HOH . T 6 HOH A 33 933 171 HOH HOH . T 6 HOH A 34 934 129 HOH HOH . T 6 HOH A 35 935 170 HOH HOH . T 6 HOH A 36 936 177 HOH HOH . T 6 HOH A 37 937 97 HOH HOH . T 6 HOH A 38 938 68 HOH HOH . T 6 HOH A 39 939 125 HOH HOH . T 6 HOH A 40 940 59 HOH HOH . T 6 HOH A 41 941 78 HOH HOH . T 6 HOH A 42 942 141 HOH HOH . T 6 HOH A 43 943 80 HOH HOH . T 6 HOH A 44 944 172 HOH HOH . T 6 HOH A 45 945 174 HOH HOH . T 6 HOH A 46 946 179 HOH HOH . T 6 HOH A 47 947 119 HOH HOH . T 6 HOH A 48 948 117 HOH HOH . T 6 HOH A 49 949 21 HOH HOH . T 6 HOH A 50 950 89 HOH HOH . T 6 HOH A 51 951 36 HOH HOH . T 6 HOH A 52 952 194 HOH HOH . T 6 HOH A 53 953 182 HOH HOH . T 6 HOH A 54 954 62 HOH HOH . T 6 HOH A 55 955 161 HOH HOH . T 6 HOH A 56 956 12 HOH HOH . T 6 HOH A 57 957 13 HOH HOH . T 6 HOH A 58 958 112 HOH HOH . T 6 HOH A 59 959 105 HOH HOH . T 6 HOH A 60 960 135 HOH HOH . T 6 HOH A 61 961 83 HOH HOH . T 6 HOH A 62 962 147 HOH HOH . T 6 HOH A 63 963 173 HOH HOH . T 6 HOH A 64 964 88 HOH HOH . T 6 HOH A 65 965 113 HOH HOH . T 6 HOH A 66 966 77 HOH HOH . T 6 HOH A 67 967 39 HOH HOH . T 6 HOH A 68 968 14 HOH HOH . T 6 HOH A 69 969 27 HOH HOH . T 6 HOH A 70 970 132 HOH HOH . T 6 HOH A 71 971 76 HOH HOH . T 6 HOH A 72 972 164 HOH HOH . T 6 HOH A 73 973 96 HOH HOH . T 6 HOH A 74 974 123 HOH HOH . T 6 HOH A 75 975 175 HOH HOH . T 6 HOH A 76 976 169 HOH HOH . T 6 HOH A 77 977 102 HOH HOH . T 6 HOH A 78 978 82 HOH HOH . T 6 HOH A 79 979 134 HOH HOH . T 6 HOH A 80 980 156 HOH HOH . T 6 HOH A 81 981 130 HOH HOH . T 6 HOH A 82 982 121 HOH HOH . T 6 HOH A 83 983 180 HOH HOH . T 6 HOH A 84 984 15 HOH HOH . T 6 HOH A 85 985 152 HOH HOH . T 6 HOH A 86 986 93 HOH HOH . T 6 HOH A 87 987 67 HOH HOH . T 6 HOH A 88 988 79 HOH HOH . T 6 HOH A 89 989 168 HOH HOH . T 6 HOH A 90 990 140 HOH HOH . T 6 HOH A 91 991 81 HOH HOH . T 6 HOH A 92 992 167 HOH HOH . T 6 HOH A 93 993 2 HOH HOH . T 6 HOH A 94 994 148 HOH HOH . T 6 HOH A 95 995 183 HOH HOH . T 6 HOH A 96 996 3 HOH HOH . T 6 HOH A 97 997 108 HOH HOH . T 6 HOH A 98 998 109 HOH HOH . T 6 HOH A 99 999 7 HOH HOH . T 6 HOH A 100 1000 16 HOH HOH . T 6 HOH A 101 1001 38 HOH HOH . T 6 HOH A 102 1002 100 HOH HOH . T 6 HOH A 103 1003 29 HOH HOH . T 6 HOH A 104 1004 162 HOH HOH . T 6 HOH A 105 1005 57 HOH HOH . T 6 HOH A 106 1006 195 HOH HOH . T 6 HOH A 107 1007 149 HOH HOH . T 6 HOH A 108 1008 151 HOH HOH . T 6 HOH A 109 1009 128 HOH HOH . T 6 HOH A 110 1010 20 HOH HOH . T 6 HOH A 111 1011 1 HOH HOH . T 6 HOH A 112 1012 94 HOH HOH . U 6 HOH B 1 901 6 HOH HOH . U 6 HOH B 2 902 43 HOH HOH . U 6 HOH B 3 903 99 HOH HOH . U 6 HOH B 4 904 85 HOH HOH . U 6 HOH B 5 905 139 HOH HOH . U 6 HOH B 6 906 10 HOH HOH . U 6 HOH B 7 907 90 HOH HOH . U 6 HOH B 8 908 91 HOH HOH . U 6 HOH B 9 909 190 HOH HOH . U 6 HOH B 10 910 127 HOH HOH . U 6 HOH B 11 911 69 HOH HOH . U 6 HOH B 12 912 131 HOH HOH . U 6 HOH B 13 913 47 HOH HOH . U 6 HOH B 14 914 153 HOH HOH . U 6 HOH B 15 915 9 HOH HOH . U 6 HOH B 16 916 28 HOH HOH . U 6 HOH B 17 917 35 HOH HOH . U 6 HOH B 18 918 115 HOH HOH . U 6 HOH B 19 919 87 HOH HOH . U 6 HOH B 20 920 185 HOH HOH . U 6 HOH B 21 921 48 HOH HOH . U 6 HOH B 22 922 144 HOH HOH . U 6 HOH B 23 923 186 HOH HOH . U 6 HOH B 24 924 18 HOH HOH . U 6 HOH B 25 925 188 HOH HOH . U 6 HOH B 26 926 101 HOH HOH . U 6 HOH B 27 927 157 HOH HOH . U 6 HOH B 28 928 42 HOH HOH . U 6 HOH B 29 929 31 HOH HOH . U 6 HOH B 30 930 71 HOH HOH . U 6 HOH B 31 931 133 HOH HOH . U 6 HOH B 32 932 44 HOH HOH . U 6 HOH B 33 933 56 HOH HOH . U 6 HOH B 34 934 23 HOH HOH . U 6 HOH B 35 935 118 HOH HOH . U 6 HOH B 36 936 126 HOH HOH . U 6 HOH B 37 937 51 HOH HOH . U 6 HOH B 38 938 104 HOH HOH . U 6 HOH B 39 939 184 HOH HOH . U 6 HOH B 40 940 116 HOH HOH . U 6 HOH B 41 941 66 HOH HOH . U 6 HOH B 42 942 154 HOH HOH . U 6 HOH B 43 943 49 HOH HOH . U 6 HOH B 44 944 193 HOH HOH . U 6 HOH B 45 945 142 HOH HOH . U 6 HOH B 46 946 24 HOH HOH . U 6 HOH B 47 947 19 HOH HOH . U 6 HOH B 48 948 46 HOH HOH . U 6 HOH B 49 949 145 HOH HOH . U 6 HOH B 50 950 158 HOH HOH . U 6 HOH B 51 951 33 HOH HOH . U 6 HOH B 52 952 8 HOH HOH . U 6 HOH B 53 953 26 HOH HOH . U 6 HOH B 54 954 192 HOH HOH . U 6 HOH B 55 955 146 HOH HOH . U 6 HOH B 56 956 155 HOH HOH . U 6 HOH B 57 957 34 HOH HOH . U 6 HOH B 58 958 95 HOH HOH . U 6 HOH B 59 959 189 HOH HOH . U 6 HOH B 60 960 98 HOH HOH . U 6 HOH B 61 961 196 HOH HOH . U 6 HOH B 62 962 30 HOH HOH . U 6 HOH B 63 963 70 HOH HOH . U 6 HOH B 64 964 45 HOH HOH . U 6 HOH B 65 965 41 HOH HOH . U 6 HOH B 66 966 143 HOH HOH . U 6 HOH B 67 967 187 HOH HOH . U 6 HOH B 68 968 122 HOH HOH . U 6 HOH B 69 969 4 HOH HOH . U 6 HOH B 70 970 65 HOH HOH . U 6 HOH B 71 971 160 HOH HOH . U 6 HOH B 72 972 11 HOH HOH . U 6 HOH B 73 973 64 HOH HOH . U 6 HOH B 74 974 40 HOH HOH . U 6 HOH B 75 975 191 HOH HOH . U 6 HOH B 76 976 114 HOH HOH . U 6 HOH B 77 977 103 HOH HOH . U 6 HOH B 78 978 32 HOH HOH . U 6 HOH B 79 979 138 HOH HOH . U 6 HOH B 80 980 58 HOH HOH . U 6 HOH B 81 981 159 HOH HOH . U 6 HOH B 82 982 72 HOH HOH . U 6 HOH B 83 983 54 HOH HOH . U 6 HOH B 84 984 52 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id N _atom_site.label_entity_id 4 _atom_site.Cartn_x 0 _atom_site.Cartn_y 0 _atom_site.Cartn_z 48.446 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 51.6 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 810 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #