data_5LMK
#
_model_server_result.job_id            xyc8vUq5IExeF8sx2svUjA 
_model_server_result.datetime_utc      '2024-11-24 23:21:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5lmk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":502}' 
#
_entry.id    5LMK 
#
_exptl.entry_id    5LMK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5LMK 
_cell.length_a            74.466 
_cell.length_b            134.395 
_cell.length_c            149.481 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5LMK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 software_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,J,K 1 1 
C,D,H,I,L,M 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C TYR 160 A TYR 159 1_555 A N TPO 161 A TPO 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale2 A C TPO 161 A TPO 160 1_555 A N HIS 162 A HIS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale3 C C TYR 160 C TYR 159 1_555 C N TPO 161 C TPO 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale4 C C TPO 161 C TPO 160 1_555 C N HIS 162 C HIS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
metalc ? metalc1 B O MET 26 B MET 200 1_555 G MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.85 ? 
metalc ? metalc2 B O GLN 29 B GLN 203 1_555 G MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? 
metalc ? metalc3 B O ILE 32 B ILE 206 1_555 G MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.712 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5LMK 
_atom_sites.fract_transf_matrix[1][1]    0.013429 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007441 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00669 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 4 6ZK A 1 301 1 6ZK MP . 
F 5 SGM B 1 501 4 SGM SGM . 
G 6 MG B 1 502 1 MG MG . 
H 4 6ZK C 1 301 1 6ZK MP . 
I 5 SGM D 1 501 3 SGM SGM . 
J 7 HOH A 1 401 13 HOH HOH . 
J 7 HOH A 2 402 207 HOH HOH . 
J 7 HOH A 3 403 15 HOH HOH . 
J 7 HOH A 4 404 201 HOH HOH . 
J 7 HOH A 5 405 41 HOH HOH . 
J 7 HOH A 6 406 213 HOH HOH . 
J 7 HOH A 7 407 234 HOH HOH . 
J 7 HOH A 8 408 26 HOH HOH . 
J 7 HOH A 9 409 186 HOH HOH . 
J 7 HOH A 10 410 206 HOH HOH . 
J 7 HOH A 11 411 197 HOH HOH . 
J 7 HOH A 12 412 125 HOH HOH . 
J 7 HOH A 13 413 140 HOH HOH . 
J 7 HOH A 14 414 29 HOH HOH . 
J 7 HOH A 15 415 86 HOH HOH . 
J 7 HOH A 16 416 17 HOH HOH . 
J 7 HOH A 17 417 27 HOH HOH . 
J 7 HOH A 18 418 113 HOH HOH . 
J 7 HOH A 19 419 153 HOH HOH . 
J 7 HOH A 20 420 124 HOH HOH . 
J 7 HOH A 21 421 211 HOH HOH . 
J 7 HOH A 22 422 93 HOH HOH . 
J 7 HOH A 23 423 107 HOH HOH . 
J 7 HOH A 24 424 180 HOH HOH . 
J 7 HOH A 25 425 108 HOH HOH . 
J 7 HOH A 26 426 168 HOH HOH . 
J 7 HOH A 27 427 66 HOH HOH . 
J 7 HOH A 28 428 49 HOH HOH . 
J 7 HOH A 29 429 110 HOH HOH . 
J 7 HOH A 30 430 6 HOH HOH . 
J 7 HOH A 31 431 77 HOH HOH . 
J 7 HOH A 32 432 198 HOH HOH . 
J 7 HOH A 33 433 7 HOH HOH . 
J 7 HOH A 34 434 81 HOH HOH . 
J 7 HOH A 35 435 85 HOH HOH . 
J 7 HOH A 36 436 143 HOH HOH . 
J 7 HOH A 37 437 18 HOH HOH . 
J 7 HOH A 38 438 34 HOH HOH . 
J 7 HOH A 39 439 224 HOH HOH . 
J 7 HOH A 40 440 57 HOH HOH . 
J 7 HOH A 41 441 1 HOH HOH . 
J 7 HOH A 42 442 95 HOH HOH . 
J 7 HOH A 43 443 230 HOH HOH . 
J 7 HOH A 44 444 188 HOH HOH . 
J 7 HOH A 45 445 62 HOH HOH . 
J 7 HOH A 46 446 106 HOH HOH . 
J 7 HOH A 47 447 35 HOH HOH . 
J 7 HOH A 48 448 115 HOH HOH . 
J 7 HOH A 49 449 147 HOH HOH . 
J 7 HOH A 50 450 141 HOH HOH . 
J 7 HOH A 51 451 83 HOH HOH . 
J 7 HOH A 52 452 225 HOH HOH . 
J 7 HOH A 53 453 194 HOH HOH . 
J 7 HOH A 54 454 158 HOH HOH . 
J 7 HOH A 55 455 21 HOH HOH . 
J 7 HOH A 56 456 129 HOH HOH . 
J 7 HOH A 57 457 159 HOH HOH . 
J 7 HOH A 58 458 130 HOH HOH . 
J 7 HOH A 59 459 45 HOH HOH . 
J 7 HOH A 60 460 92 HOH HOH . 
J 7 HOH A 61 461 200 HOH HOH . 
J 7 HOH A 62 462 199 HOH HOH . 
J 7 HOH A 63 463 111 HOH HOH . 
J 7 HOH A 64 464 5 HOH HOH . 
J 7 HOH A 65 465 55 HOH HOH . 
J 7 HOH A 66 466 132 HOH HOH . 
J 7 HOH A 67 467 146 HOH HOH . 
J 7 HOH A 68 468 47 HOH HOH . 
J 7 HOH A 69 469 134 HOH HOH . 
J 7 HOH A 70 470 238 HOH HOH . 
J 7 HOH A 71 471 99 HOH HOH . 
J 7 HOH A 72 472 142 HOH HOH . 
J 7 HOH A 73 473 75 HOH HOH . 
J 7 HOH A 74 474 58 HOH HOH . 
J 7 HOH A 75 475 220 HOH HOH . 
J 7 HOH A 76 476 243 HOH HOH . 
J 7 HOH A 77 477 25 HOH HOH . 
J 7 HOH A 78 478 192 HOH HOH . 
J 7 HOH A 79 479 222 HOH HOH . 
J 7 HOH A 80 480 59 HOH HOH . 
J 7 HOH A 81 481 195 HOH HOH . 
J 7 HOH A 82 482 102 HOH HOH . 
J 7 HOH A 83 483 152 HOH HOH . 
J 7 HOH A 84 484 172 HOH HOH . 
J 7 HOH A 85 485 231 HOH HOH . 
K 7 HOH B 1 601 216 HOH HOH . 
K 7 HOH B 2 602 191 HOH HOH . 
K 7 HOH B 3 603 53 HOH HOH . 
K 7 HOH B 4 604 128 HOH HOH . 
K 7 HOH B 5 605 133 HOH HOH . 
K 7 HOH B 6 606 202 HOH HOH . 
K 7 HOH B 7 607 228 HOH HOH . 
K 7 HOH B 8 608 118 HOH HOH . 
K 7 HOH B 9 609 43 HOH HOH . 
K 7 HOH B 10 610 136 HOH HOH . 
K 7 HOH B 11 611 242 HOH HOH . 
K 7 HOH B 12 612 96 HOH HOH . 
K 7 HOH B 13 613 48 HOH HOH . 
K 7 HOH B 14 614 50 HOH HOH . 
K 7 HOH B 15 615 127 HOH HOH . 
K 7 HOH B 16 616 208 HOH HOH . 
K 7 HOH B 17 617 160 HOH HOH . 
K 7 HOH B 18 618 233 HOH HOH . 
K 7 HOH B 19 619 8 HOH HOH . 
K 7 HOH B 20 620 126 HOH HOH . 
K 7 HOH B 21 621 54 HOH HOH . 
K 7 HOH B 22 622 135 HOH HOH . 
K 7 HOH B 23 623 139 HOH HOH . 
K 7 HOH B 24 624 3 HOH HOH . 
K 7 HOH B 25 625 226 HOH HOH . 
K 7 HOH B 26 626 217 HOH HOH . 
K 7 HOH B 27 627 137 HOH HOH . 
K 7 HOH B 28 628 101 HOH HOH . 
K 7 HOH B 29 629 98 HOH HOH . 
K 7 HOH B 30 630 14 HOH HOH . 
K 7 HOH B 31 631 105 HOH HOH . 
K 7 HOH B 32 632 156 HOH HOH . 
K 7 HOH B 33 633 145 HOH HOH . 
K 7 HOH B 34 634 157 HOH HOH . 
K 7 HOH B 35 635 181 HOH HOH . 
K 7 HOH B 36 636 100 HOH HOH . 
K 7 HOH B 37 637 123 HOH HOH . 
K 7 HOH B 38 638 154 HOH HOH . 
K 7 HOH B 39 639 64 HOH HOH . 
K 7 HOH B 40 640 71 HOH HOH . 
K 7 HOH B 41 641 82 HOH HOH . 
K 7 HOH B 42 642 60 HOH HOH . 
K 7 HOH B 43 643 19 HOH HOH . 
K 7 HOH B 44 644 219 HOH HOH . 
K 7 HOH B 45 645 10 HOH HOH . 
K 7 HOH B 46 646 61 HOH HOH . 
K 7 HOH B 47 647 11 HOH HOH . 
K 7 HOH B 48 648 161 HOH HOH . 
K 7 HOH B 49 649 84 HOH HOH . 
K 7 HOH B 50 650 56 HOH HOH . 
K 7 HOH B 51 651 204 HOH HOH . 
K 7 HOH B 52 652 9 HOH HOH . 
K 7 HOH B 53 653 65 HOH HOH . 
K 7 HOH B 54 654 30 HOH HOH . 
K 7 HOH B 55 655 51 HOH HOH . 
K 7 HOH B 56 656 12 HOH HOH . 
K 7 HOH B 57 657 37 HOH HOH . 
K 7 HOH B 58 658 131 HOH HOH . 
K 7 HOH B 59 659 39 HOH HOH . 
K 7 HOH B 60 660 209 HOH HOH . 
K 7 HOH B 61 661 74 HOH HOH . 
K 7 HOH B 62 662 166 HOH HOH . 
K 7 HOH B 63 663 68 HOH HOH . 
K 7 HOH B 64 664 229 HOH HOH . 
K 7 HOH B 65 665 46 HOH HOH . 
K 7 HOH B 66 666 203 HOH HOH . 
K 7 HOH B 67 667 177 HOH HOH . 
K 7 HOH B 68 668 232 HOH HOH . 
K 7 HOH B 69 669 227 HOH HOH . 
K 7 HOH B 70 670 215 HOH HOH . 
K 7 HOH B 71 671 193 HOH HOH . 
K 7 HOH B 72 672 235 HOH HOH . 
K 7 HOH B 73 673 214 HOH HOH . 
L 7 HOH C 1 401 210 HOH HOH . 
L 7 HOH C 2 402 80 HOH HOH . 
L 7 HOH C 3 403 44 HOH HOH . 
L 7 HOH C 4 404 190 HOH HOH . 
L 7 HOH C 5 405 184 HOH HOH . 
L 7 HOH C 6 406 237 HOH HOH . 
L 7 HOH C 7 407 187 HOH HOH . 
L 7 HOH C 8 408 63 HOH HOH . 
L 7 HOH C 9 409 89 HOH HOH . 
L 7 HOH C 10 410 162 HOH HOH . 
L 7 HOH C 11 411 212 HOH HOH . 
L 7 HOH C 12 412 24 HOH HOH . 
L 7 HOH C 13 413 170 HOH HOH . 
L 7 HOH C 14 414 76 HOH HOH . 
L 7 HOH C 15 415 112 HOH HOH . 
L 7 HOH C 16 416 114 HOH HOH . 
L 7 HOH C 17 417 163 HOH HOH . 
L 7 HOH C 18 418 72 HOH HOH . 
L 7 HOH C 19 419 116 HOH HOH . 
L 7 HOH C 20 420 23 HOH HOH . 
L 7 HOH C 21 421 40 HOH HOH . 
L 7 HOH C 22 422 32 HOH HOH . 
L 7 HOH C 23 423 171 HOH HOH . 
L 7 HOH C 24 424 67 HOH HOH . 
L 7 HOH C 25 425 196 HOH HOH . 
L 7 HOH C 26 426 239 HOH HOH . 
L 7 HOH C 27 427 4 HOH HOH . 
L 7 HOH C 28 428 16 HOH HOH . 
L 7 HOH C 29 429 20 HOH HOH . 
L 7 HOH C 30 430 28 HOH HOH . 
L 7 HOH C 31 431 148 HOH HOH . 
L 7 HOH C 32 432 38 HOH HOH . 
L 7 HOH C 33 433 144 HOH HOH . 
L 7 HOH C 34 434 91 HOH HOH . 
L 7 HOH C 35 435 104 HOH HOH . 
L 7 HOH C 36 436 218 HOH HOH . 
L 7 HOH C 37 437 175 HOH HOH . 
L 7 HOH C 38 438 164 HOH HOH . 
L 7 HOH C 39 439 182 HOH HOH . 
L 7 HOH C 40 440 2 HOH HOH . 
L 7 HOH C 41 441 241 HOH HOH . 
L 7 HOH C 42 442 179 HOH HOH . 
L 7 HOH C 43 443 240 HOH HOH . 
M 7 HOH D 1 601 155 HOH HOH . 
M 7 HOH D 2 602 223 HOH HOH . 
M 7 HOH D 3 603 78 HOH HOH . 
M 7 HOH D 4 604 79 HOH HOH . 
M 7 HOH D 5 605 165 HOH HOH . 
M 7 HOH D 6 606 88 HOH HOH . 
M 7 HOH D 7 607 178 HOH HOH . 
M 7 HOH D 8 608 36 HOH HOH . 
M 7 HOH D 9 609 169 HOH HOH . 
M 7 HOH D 10 610 117 HOH HOH . 
M 7 HOH D 11 611 205 HOH HOH . 
M 7 HOH D 12 612 103 HOH HOH . 
M 7 HOH D 13 613 87 HOH HOH . 
M 7 HOH D 14 614 97 HOH HOH . 
M 7 HOH D 15 615 31 HOH HOH . 
M 7 HOH D 16 616 149 HOH HOH . 
M 7 HOH D 17 617 22 HOH HOH . 
M 7 HOH D 18 618 52 HOH HOH . 
M 7 HOH D 19 619 69 HOH HOH . 
M 7 HOH D 20 620 185 HOH HOH . 
M 7 HOH D 21 621 73 HOH HOH . 
M 7 HOH D 22 622 173 HOH HOH . 
M 7 HOH D 23 623 167 HOH HOH . 
M 7 HOH D 24 624 236 HOH HOH . 
M 7 HOH D 25 625 33 HOH HOH . 
M 7 HOH D 26 626 189 HOH HOH . 
M 7 HOH D 27 627 120 HOH HOH . 
M 7 HOH D 28 628 174 HOH HOH . 
M 7 HOH D 29 629 119 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         G 
_atom_site.label_entity_id       6 
_atom_site.Cartn_x               -31.662 
_atom_site.Cartn_y               -16.253 
_atom_site.Cartn_z               -7.774 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        48.61 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           502 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           357 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           1 
#