data_5LMW # _model_server_result.job_id q7iHjS2t8PX2yMEU0nNzHg _model_server_result.datetime_utc '2024-11-05 00:38:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5lmw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":200}' # _entry.id 5LMW # _exptl.entry_id 5LMW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5LMW _cell.length_a 65.68 _cell.length_b 65.68 _cell.length_c 88.802 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LMW _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 24 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 22 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 98 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 92 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.023 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5LMW _atom_sites.fract_transf_matrix[1][1] 0.015225 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015225 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011261 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 200 200 GOL GOL . C 3 HOH A 1 301 221 HOH HOH . C 3 HOH A 2 302 5 HOH HOH . C 3 HOH A 3 303 152 HOH HOH . C 3 HOH A 4 304 53 HOH HOH . C 3 HOH A 5 305 12 HOH HOH . C 3 HOH A 6 306 78 HOH HOH . C 3 HOH A 7 307 40 HOH HOH . C 3 HOH A 8 308 67 HOH HOH . C 3 HOH A 9 309 173 HOH HOH . C 3 HOH A 10 310 134 HOH HOH . C 3 HOH A 11 311 82 HOH HOH . C 3 HOH A 12 312 151 HOH HOH . C 3 HOH A 13 313 209 HOH HOH . C 3 HOH A 14 314 135 HOH HOH . C 3 HOH A 15 315 42 HOH HOH . C 3 HOH A 16 316 99 HOH HOH . C 3 HOH A 17 317 23 HOH HOH . C 3 HOH A 18 318 1 HOH HOH . C 3 HOH A 19 319 2 HOH HOH . C 3 HOH A 20 320 30 HOH HOH . C 3 HOH A 21 321 200 HOH HOH . C 3 HOH A 22 322 51 HOH HOH . C 3 HOH A 23 323 44 HOH HOH . C 3 HOH A 24 324 81 HOH HOH . C 3 HOH A 25 325 157 HOH HOH . C 3 HOH A 26 326 63 HOH HOH . C 3 HOH A 27 327 167 HOH HOH . C 3 HOH A 28 328 32 HOH HOH . C 3 HOH A 29 329 175 HOH HOH . C 3 HOH A 30 330 171 HOH HOH . C 3 HOH A 31 331 77 HOH HOH . C 3 HOH A 32 332 50 HOH HOH . C 3 HOH A 33 333 174 HOH HOH . C 3 HOH A 34 334 33 HOH HOH . C 3 HOH A 35 335 85 HOH HOH . C 3 HOH A 36 336 89 HOH HOH . C 3 HOH A 37 337 204 HOH HOH . C 3 HOH A 38 338 136 HOH HOH . C 3 HOH A 39 339 6 HOH HOH . C 3 HOH A 40 340 94 HOH HOH . C 3 HOH A 41 341 137 HOH HOH . C 3 HOH A 42 342 46 HOH HOH . C 3 HOH A 43 343 145 HOH HOH . C 3 HOH A 44 344 131 HOH HOH . C 3 HOH A 45 345 106 HOH HOH . C 3 HOH A 46 346 66 HOH HOH . C 3 HOH A 47 347 208 HOH HOH . C 3 HOH A 48 348 188 HOH HOH . C 3 HOH A 49 349 62 HOH HOH . C 3 HOH A 50 350 20 HOH HOH . C 3 HOH A 51 351 218 HOH HOH . C 3 HOH A 52 352 180 HOH HOH . C 3 HOH A 53 353 205 HOH HOH . C 3 HOH A 54 354 76 HOH HOH . C 3 HOH A 55 355 11 HOH HOH . C 3 HOH A 56 356 16 HOH HOH . C 3 HOH A 57 357 83 HOH HOH . C 3 HOH A 58 358 35 HOH HOH . C 3 HOH A 59 359 198 HOH HOH . C 3 HOH A 60 360 75 HOH HOH . C 3 HOH A 61 361 27 HOH HOH . C 3 HOH A 62 362 13 HOH HOH . C 3 HOH A 63 363 79 HOH HOH . C 3 HOH A 64 364 88 HOH HOH . C 3 HOH A 65 365 128 HOH HOH . C 3 HOH A 66 366 212 HOH HOH . C 3 HOH A 67 367 4 HOH HOH . C 3 HOH A 68 368 3 HOH HOH . C 3 HOH A 69 369 116 HOH HOH . C 3 HOH A 70 370 132 HOH HOH . C 3 HOH A 71 371 139 HOH HOH . C 3 HOH A 72 372 181 HOH HOH . C 3 HOH A 73 373 14 HOH HOH . C 3 HOH A 74 374 43 HOH HOH . C 3 HOH A 75 375 155 HOH HOH . C 3 HOH A 76 376 10 HOH HOH . C 3 HOH A 77 377 36 HOH HOH . C 3 HOH A 78 378 201 HOH HOH . C 3 HOH A 79 379 31 HOH HOH . C 3 HOH A 80 380 47 HOH HOH . C 3 HOH A 81 381 29 HOH HOH . C 3 HOH A 82 382 65 HOH HOH . C 3 HOH A 83 383 104 HOH HOH . C 3 HOH A 84 384 112 HOH HOH . C 3 HOH A 85 385 102 HOH HOH . C 3 HOH A 86 386 126 HOH HOH . C 3 HOH A 87 387 54 HOH HOH . C 3 HOH A 88 388 49 HOH HOH . C 3 HOH A 89 389 168 HOH HOH . C 3 HOH A 90 390 39 HOH HOH . C 3 HOH A 91 391 72 HOH HOH . C 3 HOH A 92 392 161 HOH HOH . C 3 HOH A 93 393 124 HOH HOH . C 3 HOH A 94 394 34 HOH HOH . C 3 HOH A 95 395 60 HOH HOH . C 3 HOH A 96 396 19 HOH HOH . C 3 HOH A 97 397 115 HOH HOH . C 3 HOH A 98 398 74 HOH HOH . C 3 HOH A 99 399 87 HOH HOH . C 3 HOH A 100 400 133 HOH HOH . C 3 HOH A 101 401 15 HOH HOH . C 3 HOH A 102 402 114 HOH HOH . C 3 HOH A 103 403 92 HOH HOH . C 3 HOH A 104 404 21 HOH HOH . C 3 HOH A 105 405 28 HOH HOH . C 3 HOH A 106 406 8 HOH HOH . C 3 HOH A 107 407 170 HOH HOH . C 3 HOH A 108 408 121 HOH HOH . C 3 HOH A 109 409 48 HOH HOH . C 3 HOH A 110 410 17 HOH HOH . C 3 HOH A 111 411 37 HOH HOH . C 3 HOH A 112 412 24 HOH HOH . C 3 HOH A 113 413 84 HOH HOH . C 3 HOH A 114 414 70 HOH HOH . C 3 HOH A 115 415 130 HOH HOH . C 3 HOH A 116 416 57 HOH HOH . C 3 HOH A 117 417 105 HOH HOH . C 3 HOH A 118 418 73 HOH HOH . C 3 HOH A 119 419 159 HOH HOH . C 3 HOH A 120 420 113 HOH HOH . C 3 HOH A 121 421 98 HOH HOH . C 3 HOH A 122 422 154 HOH HOH . C 3 HOH A 123 423 7 HOH HOH . C 3 HOH A 124 424 18 HOH HOH . C 3 HOH A 125 425 166 HOH HOH . C 3 HOH A 126 426 22 HOH HOH . C 3 HOH A 127 427 216 HOH HOH . C 3 HOH A 128 428 195 HOH HOH . C 3 HOH A 129 429 109 HOH HOH . C 3 HOH A 130 430 9 HOH HOH . C 3 HOH A 131 431 165 HOH HOH . C 3 HOH A 132 432 146 HOH HOH . C 3 HOH A 133 433 199 HOH HOH . C 3 HOH A 134 434 143 HOH HOH . C 3 HOH A 135 435 71 HOH HOH . C 3 HOH A 136 436 38 HOH HOH . C 3 HOH A 137 437 162 HOH HOH . C 3 HOH A 138 438 108 HOH HOH . C 3 HOH A 139 439 120 HOH HOH . C 3 HOH A 140 440 25 HOH HOH . C 3 HOH A 141 441 41 HOH HOH . C 3 HOH A 142 442 202 HOH HOH . C 3 HOH A 143 443 111 HOH HOH . C 3 HOH A 144 444 80 HOH HOH . C 3 HOH A 145 445 97 HOH HOH . C 3 HOH A 146 446 107 HOH HOH . C 3 HOH A 147 447 59 HOH HOH . C 3 HOH A 148 448 147 HOH HOH . C 3 HOH A 149 449 217 HOH HOH . C 3 HOH A 150 450 141 HOH HOH . C 3 HOH A 151 451 127 HOH HOH . C 3 HOH A 152 452 164 HOH HOH . C 3 HOH A 153 453 182 HOH HOH . C 3 HOH A 154 454 194 HOH HOH . C 3 HOH A 155 455 103 HOH HOH . C 3 HOH A 156 456 176 HOH HOH . C 3 HOH A 157 457 193 HOH HOH . C 3 HOH A 158 458 185 HOH HOH . C 3 HOH A 159 459 214 HOH HOH . C 3 HOH A 160 460 129 HOH HOH . C 3 HOH A 161 461 45 HOH HOH . C 3 HOH A 162 462 148 HOH HOH . C 3 HOH A 163 463 210 HOH HOH . C 3 HOH A 164 464 153 HOH HOH . C 3 HOH A 165 465 186 HOH HOH . C 3 HOH A 166 466 163 HOH HOH . C 3 HOH A 167 467 69 HOH HOH . C 3 HOH A 168 468 142 HOH HOH . C 3 HOH A 169 469 160 HOH HOH . C 3 HOH A 170 470 56 HOH HOH . C 3 HOH A 171 471 119 HOH HOH . C 3 HOH A 172 472 101 HOH HOH . C 3 HOH A 173 473 117 HOH HOH . C 3 HOH A 174 474 197 HOH HOH . C 3 HOH A 175 475 215 HOH HOH . C 3 HOH A 176 476 90 HOH HOH . C 3 HOH A 177 477 123 HOH HOH . C 3 HOH A 178 478 140 HOH HOH . C 3 HOH A 179 479 100 HOH HOH . C 3 HOH A 180 480 220 HOH HOH . C 3 HOH A 181 481 178 HOH HOH . C 3 HOH A 182 482 177 HOH HOH . C 3 HOH A 183 483 96 HOH HOH . C 3 HOH A 184 484 26 HOH HOH . C 3 HOH A 185 485 187 HOH HOH . C 3 HOH A 186 486 156 HOH HOH . C 3 HOH A 187 487 172 HOH HOH . C 3 HOH A 188 488 91 HOH HOH . C 3 HOH A 189 489 169 HOH HOH . C 3 HOH A 190 490 93 HOH HOH . C 3 HOH A 191 491 206 HOH HOH . C 3 HOH A 192 492 192 HOH HOH . C 3 HOH A 193 493 64 HOH HOH . C 3 HOH A 194 494 189 HOH HOH . C 3 HOH A 195 495 196 HOH HOH . C 3 HOH A 196 496 138 HOH HOH . C 3 HOH A 197 497 122 HOH HOH . C 3 HOH A 198 498 52 HOH HOH . C 3 HOH A 199 499 144 HOH HOH . C 3 HOH A 200 500 179 HOH HOH . C 3 HOH A 201 501 158 HOH HOH . C 3 HOH A 202 502 219 HOH HOH . C 3 HOH A 203 503 211 HOH HOH . C 3 HOH A 204 504 58 HOH HOH . C 3 HOH A 205 505 184 HOH HOH . C 3 HOH A 206 506 150 HOH HOH . C 3 HOH A 207 507 213 HOH HOH . C 3 HOH A 208 508 207 HOH HOH . C 3 HOH A 209 509 61 HOH HOH . C 3 HOH A 210 510 86 HOH HOH . C 3 HOH A 211 511 110 HOH HOH . C 3 HOH A 212 512 55 HOH HOH . C 3 HOH A 213 513 149 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 13.216 -14.33 22.665 0.5 33.2 ? C1 GOL 200 A 1 HETATM 2 O O1 GOL . . . B 2 12.606 -14.838 21.479 0.5 36.5 ? O1 GOL 200 A 1 HETATM 3 C C2 GOL . . . B 2 14.57 -13.72 22.377 0.5 31.26 ? C2 GOL 200 A 1 HETATM 4 O O2 GOL . . . B 2 15.412 -14.715 21.787 0.5 34 ? O2 GOL 200 A 1 HETATM 5 C C3 GOL . . . B 2 15.22 -13.193 23.639 0.5 26.32 ? C3 GOL 200 A 1 HETATM 6 O O3 GOL . . . B 2 14.694 -11.924 24.015 0.5 17.89 ? O3 GOL 200 A 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #