data_5LNE # _model_server_result.job_id IiAgACLGLejCfhKbYIXzFA _model_server_result.datetime_utc '2024-11-12 20:35:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5lne # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":203}' # _entry.id 5LNE # _exptl.entry_id 5LNE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5LNE _cell.length_a 118.82 _cell.length_b 51.46 _cell.length_c 53.74 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LNE _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,F 1 1 B,D,E,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GAL _pdbx_entity_branch_link.comp_id_2 A2G _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O3 _pdbx_entity_branch_link.leaving_atom_id_2 HO3 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C A2G 1 C 1 A2G A 201 A2G 2 n C GAL 2 C 2 GAL A 202 GAL 2 n D A2G 1 D 1 A2G B 201 A2G 2 n D GAL 2 D 2 GAL B 202 GAL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 3 A CYS 3 1_555 A SG CYS 42 A CYS 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? disulf ? disulf2 B SG CYS 3 B CYS 3 1_555 B SG CYS 42 B CYS 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? covale ? covale1 C O3 A2G . C A2G 1 1_555 C C1 GAL . C GAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 D O3 A2G . D A2G 1 1_555 D C1 GAL . D GAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5LNE _atom_sites.fract_transf_matrix[1][1] 0.008416 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019433 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018608 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NI B 1 203 1 NI NI . F 4 HOH A 1 301 68 HOH HOH . F 4 HOH A 2 302 17 HOH HOH . F 4 HOH A 3 303 26 HOH HOH . F 4 HOH A 4 304 69 HOH HOH . F 4 HOH A 5 305 4 HOH HOH . F 4 HOH A 6 306 37 HOH HOH . F 4 HOH A 7 307 3 HOH HOH . F 4 HOH A 8 308 30 HOH HOH . F 4 HOH A 9 309 21 HOH HOH . F 4 HOH A 10 310 2 HOH HOH . F 4 HOH A 11 311 109 HOH HOH . F 4 HOH A 12 312 15 HOH HOH . F 4 HOH A 13 313 39 HOH HOH . F 4 HOH A 14 314 67 HOH HOH . F 4 HOH A 15 315 14 HOH HOH . F 4 HOH A 16 316 34 HOH HOH . F 4 HOH A 17 317 40 HOH HOH . F 4 HOH A 18 318 29 HOH HOH . F 4 HOH A 19 319 23 HOH HOH . F 4 HOH A 20 320 22 HOH HOH . F 4 HOH A 21 321 105 HOH HOH . F 4 HOH A 22 322 31 HOH HOH . F 4 HOH A 23 323 38 HOH HOH . F 4 HOH A 24 324 51 HOH HOH . F 4 HOH A 25 325 91 HOH HOH . F 4 HOH A 26 326 6 HOH HOH . F 4 HOH A 27 327 13 HOH HOH . F 4 HOH A 28 328 62 HOH HOH . F 4 HOH A 29 329 121 HOH HOH . F 4 HOH A 30 330 50 HOH HOH . F 4 HOH A 31 331 27 HOH HOH . F 4 HOH A 32 332 60 HOH HOH . F 4 HOH A 33 333 142 HOH HOH . F 4 HOH A 34 334 64 HOH HOH . F 4 HOH A 35 335 56 HOH HOH . F 4 HOH A 36 336 122 HOH HOH . F 4 HOH A 37 337 46 HOH HOH . F 4 HOH A 38 338 117 HOH HOH . F 4 HOH A 39 339 97 HOH HOH . F 4 HOH A 40 340 106 HOH HOH . F 4 HOH A 41 341 139 HOH HOH . F 4 HOH A 42 342 103 HOH HOH . F 4 HOH A 43 343 140 HOH HOH . F 4 HOH A 44 344 120 HOH HOH . G 4 HOH B 1 301 55 HOH HOH . G 4 HOH B 2 302 11 HOH HOH . G 4 HOH B 3 303 18 HOH HOH . G 4 HOH B 4 304 82 HOH HOH . G 4 HOH B 5 305 25 HOH HOH . G 4 HOH B 6 306 19 HOH HOH . G 4 HOH B 7 307 83 HOH HOH . G 4 HOH B 8 308 24 HOH HOH . G 4 HOH B 9 309 28 HOH HOH . G 4 HOH B 10 310 7 HOH HOH . G 4 HOH B 11 311 5 HOH HOH . G 4 HOH B 12 312 20 HOH HOH . G 4 HOH B 13 313 73 HOH HOH . G 4 HOH B 14 314 35 HOH HOH . G 4 HOH B 15 315 76 HOH HOH . G 4 HOH B 16 316 87 HOH HOH . G 4 HOH B 17 317 92 HOH HOH . G 4 HOH B 18 318 45 HOH HOH . G 4 HOH B 19 319 12 HOH HOH . G 4 HOH B 20 320 52 HOH HOH . G 4 HOH B 21 321 44 HOH HOH . G 4 HOH B 22 322 10 HOH HOH . G 4 HOH B 23 323 16 HOH HOH . G 4 HOH B 24 324 89 HOH HOH . G 4 HOH B 25 325 47 HOH HOH . G 4 HOH B 26 326 36 HOH HOH . G 4 HOH B 27 327 53 HOH HOH . G 4 HOH B 28 328 32 HOH HOH . G 4 HOH B 29 329 8 HOH HOH . G 4 HOH B 30 330 54 HOH HOH . G 4 HOH B 31 331 9 HOH HOH . G 4 HOH B 32 332 42 HOH HOH . G 4 HOH B 33 333 93 HOH HOH . G 4 HOH B 34 334 33 HOH HOH . G 4 HOH B 35 335 41 HOH HOH . G 4 HOH B 36 336 141 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x -19.702 _atom_site.Cartn_y -45.107 _atom_site.Cartn_z 61.205 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 75.21 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 203 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 405 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #