data_5LO9 # _model_server_result.job_id JDCkKC_PziAfqX7-E28_6Q _model_server_result.datetime_utc '2025-03-06 07:33:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5lo9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1007}' # _entry.id 5LO9 # _exptl.entry_id 5LO9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 76.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-1,2-PROPANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5LO9 _cell.length_a 159.753 _cell.length_b 159.753 _cell.length_c 393.086 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LO9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 I N N ? 4 P N N ? 4 LA N N ? 4 MA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 21 A CYS 21 1_555 C CAB HEC . A HEC 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.73 ? covale ? covale2 A SG CYS 24 A CYS 24 1_555 C CAC HEC . A HEC 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.812 ? covale ? covale3 A SG CYS 121 A CYS 121 1_555 D CAB HEC . A HEC 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? covale ? covale4 A SG CYS 287 A CYS 287 1_555 E CAB HEC . A HEC 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.709 ? covale ? covale5 A SG CYS 290 A CYS 290 1_555 E CAC HEC . A HEC 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? covale ? covale6 A SG CYS 330 A CYS 330 1_555 J S2 THJ . A THJ 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? covale ? covale7 A SG CYS 402 A CYS 402 1_555 F CAB HEC . A HEC 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.698 ? covale ? covale8 A SG CYS 405 A CYS 405 1_555 F CAC HEC . A HEC 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.879 ? covale ? covale9 B SG CYS 21 B CYS 21 1_555 CA CAB HEC . B HEC 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.688 ? covale ? covale10 B SG CYS 24 B CYS 24 1_555 CA CAC HEC . B HEC 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.799 ? covale ? covale11 B SG CYS 121 B CYS 121 1_555 DA CAB HEC . B HEC 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.788 ? covale ? covale12 B SG CYS 124 B CYS 124 1_555 DA CAC HEC . B HEC 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.947 ? covale ? covale13 B SG CYS 287 B CYS 287 1_555 EA CAB HEC . B HEC 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.685 ? covale ? covale14 B SG CYS 290 B CYS 290 1_555 EA CAC HEC . B HEC 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? covale ? covale15 B SG CYS 330 B CYS 330 1_555 HA S2 THJ . B THJ 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? covale ? covale16 B SG CYS 402 B CYS 402 1_555 FA CAB HEC . B HEC 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.76 ? covale ? covale17 B SG CYS 405 B CYS 405 1_555 FA CAC HEC . B HEC 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.948 ? metalc ? metalc1 A NE2 HIS 25 A HIS 25 1_555 C FE HEC . A HEC 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc2 A SD MET 65 A MET 65 1_555 C FE HEC . A HEC 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc3 A NE2 HIS 125 A HIS 125 1_555 D FE HEC . A HEC 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc4 A SD MET 167 A MET 167 1_555 D FE HEC . A HEC 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc5 A NE2 HIS 291 A HIS 291 1_555 E FE HEC . A HEC 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc6 A NE2 HIS 406 A HIS 406 1_555 F FE HEC . A HEC 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc7 A SD MET 450 A MET 450 1_555 F FE HEC . A HEC 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc8 B NE2 HIS 25 B HIS 25 1_555 CA FE HEC . B HEC 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc9 B SD MET 65 B MET 65 1_555 CA FE HEC . B HEC 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc10 B NE2 HIS 125 B HIS 125 1_555 DA FE HEC . B HEC 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc11 B SD MET 167 B MET 167 1_555 DA FE HEC . B HEC 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc12 B NE2 HIS 291 B HIS 291 1_555 EA FE HEC . B HEC 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc13 B NE2 HIS 406 B HIS 406 1_555 FA FE HEC . B HEC 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc14 B SD MET 450 B MET 450 1_555 FA FE HEC . B HEC 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? # _chem_comp.formula 'C3 H8 O2' _chem_comp.formula_weight 76.094 _chem_comp.id PGO _chem_comp.mon_nstd_flag . _chem_comp.name S-1,2-PROPANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PGO sing 353 n n C1 O1 PGO sing 354 n n C1 H11 PGO sing 355 n n C1 H12 PGO sing 356 n n C2 C3 PGO sing 357 n n C2 O2 PGO sing 358 n n C2 H2 PGO sing 359 n n C3 H31 PGO sing 360 n n C3 H32 PGO sing 361 n n C3 H33 PGO sing 362 n n O1 HO1 PGO sing 363 n n O2 HO2 PGO sing 364 n n # _atom_sites.entry_id 5LO9 _atom_sites.fract_transf_matrix[1][1] 0.00626 _atom_sites.fract_transf_matrix[1][2] 0.003614 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007228 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002544 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEC A 1 1001 1001 HEC HEC . D 2 HEC A 1 1002 1002 HEC HEC . E 2 HEC A 1 1003 1003 HEC HEC . F 2 HEC A 1 1004 1004 HEC HEC . G 3 CL A 1 1005 3001 CL CL . H 3 CL A 1 1006 3002 CL CL . I 4 PGO A 1 1007 5001 PGO PGO . J 5 THJ A 1 1008 9001 THJ THJ . K 3 CL A 1 1009 3003 CL CL . L 3 CL A 1 1010 3004 CL CL . M 3 CL A 1 1011 3006 CL CL . N 3 CL A 1 1012 3007 CL CL . O 3 CL A 1 1013 3009 CL CL . P 4 PGO A 1 1014 5 PGO PGO . Q 6 EDO A 1 1015 1 EDO EDO . R 6 EDO A 1 1016 2 EDO EDO . S 6 EDO A 1 1017 3 EDO EDO . T 6 EDO A 1 1018 4 EDO EDO . U 6 EDO A 1 1019 6 EDO EDO . V 6 EDO A 1 1020 8 EDO EDO . W 6 EDO A 1 1021 9 EDO EDO . X 6 EDO A 1 1022 11 EDO EDO . Y 6 EDO A 1 1023 12 EDO EDO . Z 6 EDO A 1 1024 13 EDO EDO . AA 6 EDO A 1 1025 14 EDO EDO . BA 7 PGE A 1 1026 1 PGE PGE . CA 2 HEC B 1 1001 1001 HEC HEC . DA 2 HEC B 1 1002 1002 HEC HEC . EA 2 HEC B 1 1003 1003 HEC HEC . FA 2 HEC B 1 1004 1004 HEC HEC . GA 3 CL B 1 1005 3001 CL CL . HA 5 THJ B 1 1006 9001 THJ THJ . IA 3 CL B 1 1007 3002 CL CL . JA 3 CL B 1 1008 3005 CL CL . KA 3 CL B 1 1009 3008 CL CL . LA 4 PGO B 1 1010 1 PGO PGO . MA 4 PGO B 1 1011 2 PGO PGO . NA 6 EDO B 1 1012 7 EDO EDO . OA 8 HOH A 1 1101 44 HOH HOH . OA 8 HOH A 2 1102 49 HOH HOH . OA 8 HOH A 3 1103 18 HOH HOH . OA 8 HOH A 4 1104 125 HOH HOH . OA 8 HOH A 5 1105 79 HOH HOH . OA 8 HOH A 6 1106 7 HOH HOH . OA 8 HOH A 7 1107 5 HOH HOH . OA 8 HOH A 8 1108 50 HOH HOH . OA 8 HOH A 9 1109 48 HOH HOH . OA 8 HOH A 10 1110 38 HOH HOH . OA 8 HOH A 11 1111 4 HOH HOH . OA 8 HOH A 12 1112 58 HOH HOH . OA 8 HOH A 13 1113 82 HOH HOH . OA 8 HOH A 14 1114 85 HOH HOH . OA 8 HOH A 15 1115 103 HOH HOH . OA 8 HOH A 16 1116 69 HOH HOH . OA 8 HOH A 17 1117 1 HOH HOH . OA 8 HOH A 18 1118 14 HOH HOH . OA 8 HOH A 19 1119 35 HOH HOH . OA 8 HOH A 20 1120 56 HOH HOH . OA 8 HOH A 21 1121 8 HOH HOH . OA 8 HOH A 22 1122 6 HOH HOH . OA 8 HOH A 23 1123 27 HOH HOH . OA 8 HOH A 24 1124 84 HOH HOH . OA 8 HOH A 25 1125 9 HOH HOH . OA 8 HOH A 26 1126 72 HOH HOH . OA 8 HOH A 27 1127 51 HOH HOH . OA 8 HOH A 28 1128 36 HOH HOH . OA 8 HOH A 29 1129 73 HOH HOH . OA 8 HOH A 30 1130 11 HOH HOH . OA 8 HOH A 31 1131 43 HOH HOH . OA 8 HOH A 32 1132 10 HOH HOH . OA 8 HOH A 33 1133 55 HOH HOH . OA 8 HOH A 34 1134 110 HOH HOH . OA 8 HOH A 35 1135 77 HOH HOH . OA 8 HOH A 36 1136 42 HOH HOH . OA 8 HOH A 37 1137 107 HOH HOH . OA 8 HOH A 38 1138 68 HOH HOH . OA 8 HOH A 39 1139 120 HOH HOH . OA 8 HOH A 40 1140 65 HOH HOH . OA 8 HOH A 41 1141 57 HOH HOH . OA 8 HOH A 42 1142 63 HOH HOH . OA 8 HOH A 43 1143 88 HOH HOH . OA 8 HOH A 44 1144 92 HOH HOH . OA 8 HOH A 45 1145 102 HOH HOH . OA 8 HOH A 46 1146 21 HOH HOH . OA 8 HOH A 47 1147 30 HOH HOH . OA 8 HOH A 48 1148 23 HOH HOH . OA 8 HOH A 49 1149 93 HOH HOH . OA 8 HOH A 50 1150 16 HOH HOH . OA 8 HOH A 51 1151 40 HOH HOH . OA 8 HOH A 52 1152 109 HOH HOH . OA 8 HOH A 53 1153 94 HOH HOH . OA 8 HOH A 54 1154 34 HOH HOH . OA 8 HOH A 55 1155 116 HOH HOH . OA 8 HOH A 56 1156 81 HOH HOH . OA 8 HOH A 57 1157 31 HOH HOH . OA 8 HOH A 58 1158 22 HOH HOH . OA 8 HOH A 59 1159 89 HOH HOH . OA 8 HOH A 60 1160 66 HOH HOH . OA 8 HOH A 61 1161 46 HOH HOH . OA 8 HOH A 62 1162 64 HOH HOH . OA 8 HOH A 63 1163 74 HOH HOH . OA 8 HOH A 64 1164 75 HOH HOH . OA 8 HOH A 65 1165 122 HOH HOH . OA 8 HOH A 66 1166 28 HOH HOH . OA 8 HOH A 67 1167 20 HOH HOH . OA 8 HOH A 68 1168 90 HOH HOH . OA 8 HOH A 69 1169 59 HOH HOH . PA 8 HOH B 1 1101 118 HOH HOH . PA 8 HOH B 2 1102 53 HOH HOH . PA 8 HOH B 3 1103 83 HOH HOH . PA 8 HOH B 4 1104 37 HOH HOH . PA 8 HOH B 5 1105 52 HOH HOH . PA 8 HOH B 6 1106 47 HOH HOH . PA 8 HOH B 7 1107 70 HOH HOH . PA 8 HOH B 8 1108 13 HOH HOH . PA 8 HOH B 9 1109 71 HOH HOH . PA 8 HOH B 10 1110 24 HOH HOH . PA 8 HOH B 11 1111 12 HOH HOH . PA 8 HOH B 12 1112 3 HOH HOH . PA 8 HOH B 13 1113 108 HOH HOH . PA 8 HOH B 14 1114 2 HOH HOH . PA 8 HOH B 15 1115 100 HOH HOH . PA 8 HOH B 16 1116 54 HOH HOH . PA 8 HOH B 17 1117 105 HOH HOH . PA 8 HOH B 18 1118 80 HOH HOH . PA 8 HOH B 19 1119 86 HOH HOH . PA 8 HOH B 20 1120 25 HOH HOH . PA 8 HOH B 21 1121 101 HOH HOH . PA 8 HOH B 22 1122 121 HOH HOH . PA 8 HOH B 23 1123 99 HOH HOH . PA 8 HOH B 24 1124 67 HOH HOH . PA 8 HOH B 25 1125 29 HOH HOH . PA 8 HOH B 26 1126 17 HOH HOH . PA 8 HOH B 27 1127 41 HOH HOH . PA 8 HOH B 28 1128 33 HOH HOH . PA 8 HOH B 29 1129 87 HOH HOH . PA 8 HOH B 30 1130 26 HOH HOH . PA 8 HOH B 31 1131 98 HOH HOH . PA 8 HOH B 32 1132 61 HOH HOH . PA 8 HOH B 33 1133 39 HOH HOH . PA 8 HOH B 34 1134 123 HOH HOH . PA 8 HOH B 35 1135 111 HOH HOH . PA 8 HOH B 36 1136 106 HOH HOH . PA 8 HOH B 37 1137 76 HOH HOH . PA 8 HOH B 38 1138 62 HOH HOH . PA 8 HOH B 39 1139 32 HOH HOH . PA 8 HOH B 40 1140 45 HOH HOH . PA 8 HOH B 41 1141 112 HOH HOH . PA 8 HOH B 42 1142 113 HOH HOH . PA 8 HOH B 43 1143 104 HOH HOH . PA 8 HOH B 44 1144 124 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PGO . . . I 4 41.031 -10.665 136.54 1 61.6 ? C1 PGO 1007 A 1 HETATM 2 C C2 PGO . . . I 4 40.546 -9.275 136.088 1 74.05 ? C2 PGO 1007 A 1 HETATM 3 C C3 PGO . . . I 4 41.673 -8.53 135.334 1 54.07 ? C3 PGO 1007 A 1 HETATM 4 O O1 PGO . . . I 4 42.488 -10.662 136.534 1 70.37 ? O1 PGO 1007 A 1 HETATM 5 O O2 PGO . . . I 4 40.058 -8.465 137.193 1 60 ? O2 PGO 1007 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 5 #