data_5LOV # _model_server_result.job_id H58AvWVlsmZSp99L_WYRZA _model_server_result.datetime_utc '2024-10-13 14:20:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5lov # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":502}' # _entry.id 5LOV # _exptl.entry_id 5LOV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 195.237 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5LOV _cell.length_a 103.16 _cell.length_b 154.7 _cell.length_c 180.32 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LOV _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 9 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 39 A ASP 39 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.566 ? metalc ? metalc2 A OD2 ASP 39 A ASP 39 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc3 A O THR 41 A THR 41 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.819 ? metalc ? metalc4 A OG1 THR 41 A THR 41 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc5 A O GLY 44 A GLY 44 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.512 ? metalc ? metalc6 A OE1 GLU 55 A GLU 55 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? metalc ? metalc7 A OE2 GLU 55 A GLU 55 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.73 ? metalc ? metalc8 A OE2 GLU 71 A GLU 71 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.713 ? metalc ? metalc9 A OD2 ASP 98 A ASP 98 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.627 ? metalc ? metalc10 G O2G GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc11 H MG MG . A MG 502 1_555 R O HOH . A HOH 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? metalc ? metalc12 H MG MG . A MG 502 1_555 R O HOH . A HOH 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.975 ? metalc ? metalc13 H MG MG . A MG 502 1_555 R O HOH . A HOH 613 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? metalc ? metalc14 B OE1 GLN 11 B GLN 11 1_555 L MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.794 ? metalc ? metalc15 L MG MG . B MG 503 1_555 S O HOH . B HOH 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc16 L MG MG . B MG 503 1_555 S O HOH . B HOH 620 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.872 ? metalc ? metalc17 L MG MG . B MG 503 1_555 C OE1 GLU 254 C GLU 254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc18 L MG MG . B MG 503 1_555 C OE2 GLU 254 C GLU 254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.999 ? metalc ? metalc19 M O1G GTP . C GTP 501 1_555 N MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc20 M O3G GTP . C GTP 501 1_555 N MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.739 ? metalc ? metalc21 M O1B GTP . C GTP 501 1_555 N MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc22 N MG MG . C MG 502 1_555 T O HOH . C HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc23 N MG MG . C MG 502 1_555 T O HOH . C HOH 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.641 ? metalc ? metalc24 N MG MG . C MG 502 1_555 T O HOH . C HOH 637 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? # _chem_comp.formula 'C6 H13 N O4 S' _chem_comp.formula_weight 195.237 _chem_comp.id MES _chem_comp.mon_nstd_flag . _chem_comp.name '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 MES sing 453 n n O1 C6 MES sing 454 n n C2 C3 MES sing 455 n n C2 H21 MES sing 456 n n C2 H22 MES sing 457 n n C3 N4 MES sing 458 n n C3 H31 MES sing 459 n n C3 H32 MES sing 460 n n N4 C5 MES sing 461 n n N4 C7 MES sing 462 n n N4 HN4 MES sing 463 n n C5 C6 MES sing 464 n n C5 H51 MES sing 465 n n C5 H52 MES sing 466 n n C6 H61 MES sing 467 n n C6 H62 MES sing 468 n n C7 C8 MES sing 469 n n C7 H71 MES sing 470 n n C7 H72 MES sing 471 n n C8 S MES sing 472 n n C8 H81 MES sing 473 n n C8 H82 MES sing 474 n n S O1S MES doub 475 n n S O2S MES doub 476 n n S O3S MES sing 477 n n # _atom_sites.entry_id 5LOV _atom_sites.fract_transf_matrix[1][1] 0.009694 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006464 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005546 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 5 GTP A 1 501 501 GTP GTP . H 6 MG A 1 502 502 MG MG . I 7 CA A 1 503 503 CA CA . J 8 GDP B 1 501 501 GDP GDP . K 9 MES B 1 502 700 MES MES . L 6 MG B 1 503 502 MG MG . M 5 GTP C 1 501 501 GTP GTP . N 6 MG C 1 502 502 MG MG . O 10 71E C 1 503 600 71E DRG . P 8 GDP D 1 501 501 GDP GDP . Q 11 ACP F 1 401 703 ACP ACP . R 12 HOH A 1 601 73 HOH HOH . R 12 HOH A 2 602 63 HOH HOH . R 12 HOH A 3 603 57 HOH HOH . R 12 HOH A 4 604 126 HOH HOH . R 12 HOH A 5 605 141 HOH HOH . R 12 HOH A 6 606 53 HOH HOH . R 12 HOH A 7 607 5 HOH HOH . R 12 HOH A 8 608 42 HOH HOH . R 12 HOH A 9 609 144 HOH HOH . R 12 HOH A 10 610 12 HOH HOH . R 12 HOH A 11 611 102 HOH HOH . R 12 HOH A 12 612 67 HOH HOH . R 12 HOH A 13 613 8 HOH HOH . R 12 HOH A 14 614 125 HOH HOH . R 12 HOH A 15 615 30 HOH HOH . R 12 HOH A 16 616 91 HOH HOH . R 12 HOH A 17 617 56 HOH HOH . R 12 HOH A 18 618 116 HOH HOH . R 12 HOH A 19 619 80 HOH HOH . R 12 HOH A 20 620 51 HOH HOH . R 12 HOH A 21 621 135 HOH HOH . R 12 HOH A 22 622 59 HOH HOH . R 12 HOH A 23 623 75 HOH HOH . R 12 HOH A 24 624 98 HOH HOH . R 12 HOH A 25 625 133 HOH HOH . R 12 HOH A 26 626 100 HOH HOH . R 12 HOH A 27 627 128 HOH HOH . R 12 HOH A 28 628 97 HOH HOH . R 12 HOH A 29 629 70 HOH HOH . R 12 HOH A 30 630 33 HOH HOH . R 12 HOH A 31 631 19 HOH HOH . R 12 HOH A 32 632 83 HOH HOH . S 12 HOH B 1 601 11 HOH HOH . S 12 HOH B 2 602 134 HOH HOH . S 12 HOH B 3 603 6 HOH HOH . S 12 HOH B 4 604 21 HOH HOH . S 12 HOH B 5 605 2 HOH HOH . S 12 HOH B 6 606 23 HOH HOH . S 12 HOH B 7 607 113 HOH HOH . S 12 HOH B 8 608 43 HOH HOH . S 12 HOH B 9 609 107 HOH HOH . S 12 HOH B 10 610 28 HOH HOH . S 12 HOH B 11 611 138 HOH HOH . S 12 HOH B 12 612 1 HOH HOH . S 12 HOH B 13 613 46 HOH HOH . S 12 HOH B 14 614 140 HOH HOH . S 12 HOH B 15 615 77 HOH HOH . S 12 HOH B 16 616 129 HOH HOH . S 12 HOH B 17 617 130 HOH HOH . S 12 HOH B 18 618 110 HOH HOH . S 12 HOH B 19 619 112 HOH HOH . S 12 HOH B 20 620 136 HOH HOH . S 12 HOH B 21 621 143 HOH HOH . S 12 HOH B 22 622 99 HOH HOH . S 12 HOH B 23 623 66 HOH HOH . S 12 HOH B 24 624 55 HOH HOH . S 12 HOH B 25 625 85 HOH HOH . S 12 HOH B 26 626 71 HOH HOH . S 12 HOH B 27 627 94 HOH HOH . S 12 HOH B 28 628 131 HOH HOH . S 12 HOH B 29 629 60 HOH HOH . S 12 HOH B 30 630 139 HOH HOH . T 12 HOH C 1 601 9 HOH HOH . T 12 HOH C 2 602 54 HOH HOH . T 12 HOH C 3 603 50 HOH HOH . T 12 HOH C 4 604 72 HOH HOH . T 12 HOH C 5 605 29 HOH HOH . T 12 HOH C 6 606 104 HOH HOH . T 12 HOH C 7 607 7 HOH HOH . T 12 HOH C 8 608 111 HOH HOH . T 12 HOH C 9 609 76 HOH HOH . T 12 HOH C 10 610 114 HOH HOH . T 12 HOH C 11 611 16 HOH HOH . T 12 HOH C 12 612 86 HOH HOH . T 12 HOH C 13 613 38 HOH HOH . T 12 HOH C 14 614 10 HOH HOH . T 12 HOH C 15 615 108 HOH HOH . T 12 HOH C 16 616 22 HOH HOH . T 12 HOH C 17 617 34 HOH HOH . T 12 HOH C 18 618 68 HOH HOH . T 12 HOH C 19 619 45 HOH HOH . T 12 HOH C 20 620 74 HOH HOH . T 12 HOH C 21 621 62 HOH HOH . T 12 HOH C 22 622 105 HOH HOH . T 12 HOH C 23 623 41 HOH HOH . T 12 HOH C 24 624 87 HOH HOH . T 12 HOH C 25 625 37 HOH HOH . T 12 HOH C 26 626 15 HOH HOH . T 12 HOH C 27 627 64 HOH HOH . T 12 HOH C 28 628 14 HOH HOH . T 12 HOH C 29 629 27 HOH HOH . T 12 HOH C 30 630 25 HOH HOH . T 12 HOH C 31 631 39 HOH HOH . T 12 HOH C 32 632 69 HOH HOH . T 12 HOH C 33 633 49 HOH HOH . T 12 HOH C 34 634 84 HOH HOH . T 12 HOH C 35 635 24 HOH HOH . T 12 HOH C 36 636 90 HOH HOH . T 12 HOH C 37 637 4 HOH HOH . T 12 HOH C 38 638 47 HOH HOH . T 12 HOH C 39 639 132 HOH HOH . T 12 HOH C 40 640 61 HOH HOH . T 12 HOH C 41 641 36 HOH HOH . T 12 HOH C 42 642 31 HOH HOH . T 12 HOH C 43 643 127 HOH HOH . T 12 HOH C 44 644 26 HOH HOH . T 12 HOH C 45 645 137 HOH HOH . T 12 HOH C 46 646 88 HOH HOH . T 12 HOH C 47 647 18 HOH HOH . T 12 HOH C 48 648 103 HOH HOH . T 12 HOH C 49 649 17 HOH HOH . T 12 HOH C 50 650 122 HOH HOH . T 12 HOH C 51 651 78 HOH HOH . T 12 HOH C 52 652 52 HOH HOH . T 12 HOH C 53 653 44 HOH HOH . T 12 HOH C 54 654 119 HOH HOH . T 12 HOH C 55 655 40 HOH HOH . T 12 HOH C 56 656 121 HOH HOH . T 12 HOH C 57 657 118 HOH HOH . T 12 HOH C 58 658 58 HOH HOH . T 12 HOH C 59 659 117 HOH HOH . T 12 HOH C 60 660 124 HOH HOH . T 12 HOH C 61 661 109 HOH HOH . T 12 HOH C 62 662 81 HOH HOH . T 12 HOH C 63 663 115 HOH HOH . T 12 HOH C 64 664 93 HOH HOH . T 12 HOH C 65 665 92 HOH HOH . T 12 HOH C 66 666 89 HOH HOH . U 12 HOH D 1 601 79 HOH HOH . U 12 HOH D 2 602 106 HOH HOH . U 12 HOH D 3 603 123 HOH HOH . U 12 HOH D 4 604 65 HOH HOH . U 12 HOH D 5 605 120 HOH HOH . U 12 HOH D 6 606 35 HOH HOH . U 12 HOH D 7 607 82 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 MES . . . K 9 30.635 55.128 33.08 1 65.96 ? O1 MES 502 B 1 HETATM 2 C C2 MES . . . K 9 30.299 56.351 32.434 1 53.54 ? C2 MES 502 B 1 HETATM 3 C C3 MES . . . K 9 31.225 57.446 32.94 1 72.38 ? C3 MES 502 B 1 HETATM 4 N N4 MES . . . K 9 31.052 57.554 34.384 1 81.65 ? N4 MES 502 B 1 HETATM 5 C C5 MES . . . K 9 31.318 56.32 35.111 1 69.89 ? C5 MES 502 B 1 HETATM 6 C C6 MES . . . K 9 30.469 55.212 34.495 1 69.2 ? C6 MES 502 B 1 HETATM 7 C C7 MES . . . K 9 31.751 58.701 34.946 1 94.48 ? C7 MES 502 B 1 HETATM 8 C C8 MES . . . K 9 30.847 59.318 36.004 1 102.12 ? C8 MES 502 B 1 HETATM 9 S S MES . . . K 9 31.747 60.38 36.906 1 117.33 ? S MES 502 B 1 HETATM 10 O O1S MES . . . K 9 32.856 60.907 36.081 1 113.72 ? O1S MES 502 B 1 HETATM 11 O O2S MES . . . K 9 30.885 61.494 37.365 1 113.1 ? O2S MES 502 B 1 HETATM 12 O O3S MES . . . K 9 32.303 59.661 38.077 1 117.57 ? O3S MES 502 B 1 HETATM 13 H H21 MES . . . K 9 29.261 56.613 32.652 1 64.24 ? H21 MES 502 B 1 HETATM 14 H H22 MES . . . K 9 30.406 56.244 31.353 1 64.24 ? H22 MES 502 B 1 HETATM 15 H H31 MES . . . K 9 32.263 57.202 32.707 1 86.86 ? H31 MES 502 B 1 HETATM 16 H H32 MES . . . K 9 30.987 58.399 32.463 1 86.86 ? H32 MES 502 B 1 HETATM 17 H HN4 MES . . . K 9 30.071 57.741 34.525 1 97.98 ? HN4 MES 502 B 1 HETATM 18 H H51 MES . . . K 9 31.071 56.448 36.167 1 83.87 ? H51 MES 502 B 1 HETATM 19 H H52 MES . . . K 9 32.379 56.069 35.042 1 83.87 ? H52 MES 502 B 1 HETATM 20 H H61 MES . . . K 9 30.742 54.257 34.95 1 83.04 ? H61 MES 502 B 1 HETATM 21 H H62 MES . . . K 9 29.418 55.392 34.731 1 83.04 ? H62 MES 502 B 1 HETATM 22 H H71 MES . . . K 9 32.694 58.384 35.395 1 113.37 ? H71 MES 502 B 1 HETATM 23 H H72 MES . . . K 9 31.966 59.431 34.162 1 113.37 ? H72 MES 502 B 1 HETATM 24 H H81 MES . . . K 9 30.018 59.843 35.526 1 122.55 ? H81 MES 502 B 1 HETATM 25 H H82 MES . . . K 9 30.437 58.536 36.646 1 122.55 ? H82 MES 502 B 1 # _model_server_stats.io_time_ms 39 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 25 #