data_5LPG # _model_server_result.job_id jlObr9CGrXJgvLKjk1BqeA _model_server_result.datetime_utc '2024-11-04 22:45:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5lpg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1101}' # _entry.id 5LPG # _exptl.entry_id 5LPG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5LPG _cell.length_a 46.502 _cell.length_b 49.05 _cell.length_c 135.56 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LPG _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 63 A GLU 63 1_555 C MG MG . A MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc2 A OE2 GLU 67 A GLU 67 1_555 C MG MG . A MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc3 C MG MG . A MG 1101 1_555 I O HOH . A HOH 1210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc4 C MG MG . A MG 1101 1_555 I O HOH . A HOH 1211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc5 C MG MG . A MG 1101 1_555 I O HOH . A HOH 1228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc6 C MG MG . A MG 1101 1_555 I O HOH . A HOH 1263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc7 I O HOH . A HOH 1271 1_555 H MG MG . B MG 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc8 B O GLY 47 B GLY 47 1_555 F MG MG . B MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc9 B OE1 GLU 63 B GLU 63 1_555 E MG MG . B MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc10 B OE2 GLU 63 B GLU 63 1_555 H MG MG . B MG 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc11 B OE2 GLU 67 B GLU 67 1_555 E MG MG . B MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc12 B OE2 GLU 67 B GLU 67 1_555 F MG MG . B MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc13 E MG MG . B MG 1101 1_555 J O HOH . B HOH 1209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc14 E MG MG . B MG 1101 1_555 J O HOH . B HOH 1215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc15 E MG MG . B MG 1101 1_555 J O HOH . B HOH 1230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc16 E MG MG . B MG 1101 1_555 J O HOH . B HOH 1267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc17 F MG MG . B MG 1102 1_555 J O HOH . B HOH 1215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.86 ? metalc ? metalc18 F MG MG . B MG 1102 1_555 J O HOH . B HOH 1227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc19 F MG MG . B MG 1102 1_555 J O HOH . B HOH 1254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc20 F MG MG . B MG 1102 1_555 J O HOH . B HOH 1257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc21 G MG MG . B MG 1103 1_555 J O HOH . B HOH 1215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.701 ? metalc ? metalc22 G MG MG . B MG 1103 1_555 J O HOH . B HOH 1243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.706 ? metalc ? metalc23 G MG MG . B MG 1103 1_555 J O HOH . B HOH 1264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.89 ? metalc ? metalc24 G MG MG . B MG 1103 1_555 J O HOH . B HOH 1283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.844 ? metalc ? metalc25 H MG MG . B MG 1104 1_555 J O HOH . B HOH 1214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.942 ? metalc ? metalc26 H MG MG . B MG 1104 1_555 J O HOH . B HOH 1220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc27 H MG MG . B MG 1104 1_555 J O HOH . B HOH 1243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc28 H MG MG . B MG 1104 1_555 J O HOH . B HOH 1267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5LPG _atom_sites.fract_transf_matrix[1][1] 0.021504 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020387 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007377 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 1101 1101 MG MG . D 3 71V A 1 1102 1001 71V 6SG . E 2 MG B 1 1101 1101 MG MG . F 2 MG B 1 1102 1102 MG MG . G 2 MG B 1 1103 1103 MG MG . H 2 MG B 1 1104 1104 MG MG . I 4 HOH A 1 1201 165 HOH HOH . I 4 HOH A 2 1202 31 HOH HOH . I 4 HOH A 3 1203 174 HOH HOH . I 4 HOH A 4 1204 57 HOH HOH . I 4 HOH A 5 1205 191 HOH HOH . I 4 HOH A 6 1206 157 HOH HOH . I 4 HOH A 7 1207 55 HOH HOH . I 4 HOH A 8 1208 137 HOH HOH . I 4 HOH A 9 1209 3 HOH HOH . I 4 HOH A 10 1210 11 HOH HOH . I 4 HOH A 11 1211 4 HOH HOH . I 4 HOH A 12 1212 36 HOH HOH . I 4 HOH A 13 1213 132 HOH HOH . I 4 HOH A 14 1214 101 HOH HOH . I 4 HOH A 15 1215 81 HOH HOH . I 4 HOH A 16 1216 82 HOH HOH . I 4 HOH A 17 1217 63 HOH HOH . I 4 HOH A 18 1218 12 HOH HOH . I 4 HOH A 19 1219 50 HOH HOH . I 4 HOH A 20 1220 190 HOH HOH . I 4 HOH A 21 1221 160 HOH HOH . I 4 HOH A 22 1222 80 HOH HOH . I 4 HOH A 23 1223 26 HOH HOH . I 4 HOH A 24 1224 68 HOH HOH . I 4 HOH A 25 1225 71 HOH HOH . I 4 HOH A 26 1226 85 HOH HOH . I 4 HOH A 27 1227 103 HOH HOH . I 4 HOH A 28 1228 2 HOH HOH . I 4 HOH A 29 1229 111 HOH HOH . I 4 HOH A 30 1230 30 HOH HOH . I 4 HOH A 31 1231 170 HOH HOH . I 4 HOH A 32 1232 176 HOH HOH . I 4 HOH A 33 1233 44 HOH HOH . I 4 HOH A 34 1234 64 HOH HOH . I 4 HOH A 35 1235 69 HOH HOH . I 4 HOH A 36 1236 113 HOH HOH . I 4 HOH A 37 1237 112 HOH HOH . I 4 HOH A 38 1238 119 HOH HOH . I 4 HOH A 39 1239 43 HOH HOH . I 4 HOH A 40 1240 60 HOH HOH . I 4 HOH A 41 1241 39 HOH HOH . I 4 HOH A 42 1242 38 HOH HOH . I 4 HOH A 43 1243 131 HOH HOH . I 4 HOH A 44 1244 167 HOH HOH . I 4 HOH A 45 1245 65 HOH HOH . I 4 HOH A 46 1246 168 HOH HOH . I 4 HOH A 47 1247 54 HOH HOH . I 4 HOH A 48 1248 162 HOH HOH . I 4 HOH A 49 1249 124 HOH HOH . I 4 HOH A 50 1250 107 HOH HOH . I 4 HOH A 51 1251 99 HOH HOH . I 4 HOH A 52 1252 33 HOH HOH . I 4 HOH A 53 1253 163 HOH HOH . I 4 HOH A 54 1254 83 HOH HOH . I 4 HOH A 55 1255 161 HOH HOH . I 4 HOH A 56 1256 171 HOH HOH . I 4 HOH A 57 1257 87 HOH HOH . I 4 HOH A 58 1258 184 HOH HOH . I 4 HOH A 59 1259 34 HOH HOH . I 4 HOH A 60 1260 169 HOH HOH . I 4 HOH A 61 1261 56 HOH HOH . I 4 HOH A 62 1262 105 HOH HOH . I 4 HOH A 63 1263 175 HOH HOH . I 4 HOH A 64 1264 126 HOH HOH . I 4 HOH A 65 1265 62 HOH HOH . I 4 HOH A 66 1266 188 HOH HOH . I 4 HOH A 67 1267 97 HOH HOH . I 4 HOH A 68 1268 148 HOH HOH . I 4 HOH A 69 1269 25 HOH HOH . I 4 HOH A 70 1270 52 HOH HOH . I 4 HOH A 71 1271 16 HOH HOH . I 4 HOH A 72 1272 32 HOH HOH . I 4 HOH A 73 1273 129 HOH HOH . J 4 HOH B 1 1201 79 HOH HOH . J 4 HOH B 2 1202 139 HOH HOH . J 4 HOH B 3 1203 58 HOH HOH . J 4 HOH B 4 1204 35 HOH HOH . J 4 HOH B 5 1205 100 HOH HOH . J 4 HOH B 6 1206 181 HOH HOH . J 4 HOH B 7 1207 28 HOH HOH . J 4 HOH B 8 1208 115 HOH HOH . J 4 HOH B 9 1209 18 HOH HOH . J 4 HOH B 10 1210 70 HOH HOH . J 4 HOH B 11 1211 46 HOH HOH . J 4 HOH B 12 1212 102 HOH HOH . J 4 HOH B 13 1213 37 HOH HOH . J 4 HOH B 14 1214 182 HOH HOH . J 4 HOH B 15 1215 13 HOH HOH . J 4 HOH B 16 1216 7 HOH HOH . J 4 HOH B 17 1217 41 HOH HOH . J 4 HOH B 18 1218 164 HOH HOH . J 4 HOH B 19 1219 22 HOH HOH . J 4 HOH B 20 1220 15 HOH HOH . J 4 HOH B 21 1221 24 HOH HOH . J 4 HOH B 22 1222 27 HOH HOH . J 4 HOH B 23 1223 108 HOH HOH . J 4 HOH B 24 1224 141 HOH HOH . J 4 HOH B 25 1225 42 HOH HOH . J 4 HOH B 26 1226 98 HOH HOH . J 4 HOH B 27 1227 6 HOH HOH . J 4 HOH B 28 1228 77 HOH HOH . J 4 HOH B 29 1229 121 HOH HOH . J 4 HOH B 30 1230 19 HOH HOH . J 4 HOH B 31 1231 74 HOH HOH . J 4 HOH B 32 1232 158 HOH HOH . J 4 HOH B 33 1233 66 HOH HOH . J 4 HOH B 34 1234 172 HOH HOH . J 4 HOH B 35 1235 61 HOH HOH . J 4 HOH B 36 1236 40 HOH HOH . J 4 HOH B 37 1237 86 HOH HOH . J 4 HOH B 38 1238 156 HOH HOH . J 4 HOH B 39 1239 177 HOH HOH . J 4 HOH B 40 1240 133 HOH HOH . J 4 HOH B 41 1241 185 HOH HOH . J 4 HOH B 42 1242 48 HOH HOH . J 4 HOH B 43 1243 20 HOH HOH . J 4 HOH B 44 1244 114 HOH HOH . J 4 HOH B 45 1245 72 HOH HOH . J 4 HOH B 46 1246 49 HOH HOH . J 4 HOH B 47 1247 189 HOH HOH . J 4 HOH B 48 1248 17 HOH HOH . J 4 HOH B 49 1249 95 HOH HOH . J 4 HOH B 50 1250 59 HOH HOH . J 4 HOH B 51 1251 186 HOH HOH . J 4 HOH B 52 1252 7 HOH HOH . J 4 HOH B 53 1253 53 HOH HOH . J 4 HOH B 54 1254 10 HOH HOH . J 4 HOH B 55 1255 93 HOH HOH . J 4 HOH B 56 1256 75 HOH HOH . J 4 HOH B 57 1257 14 HOH HOH . J 4 HOH B 58 1258 1 HOH HOH . J 4 HOH B 59 1259 187 HOH HOH . J 4 HOH B 60 1260 173 HOH HOH . J 4 HOH B 61 1261 178 HOH HOH . J 4 HOH B 62 1262 51 HOH HOH . J 4 HOH B 63 1263 92 HOH HOH . J 4 HOH B 64 1264 9 HOH HOH . J 4 HOH B 65 1265 45 HOH HOH . J 4 HOH B 66 1266 6 HOH HOH . J 4 HOH B 67 1267 8 HOH HOH . J 4 HOH B 68 1268 3 HOH HOH . J 4 HOH B 69 1269 23 HOH HOH . J 4 HOH B 70 1270 138 HOH HOH . J 4 HOH B 71 1271 1 HOH HOH . J 4 HOH B 72 1272 2 HOH HOH . J 4 HOH B 73 1273 183 HOH HOH . J 4 HOH B 74 1274 180 HOH HOH . J 4 HOH B 75 1275 179 HOH HOH . J 4 HOH B 76 1276 159 HOH HOH . J 4 HOH B 77 1277 21 HOH HOH . J 4 HOH B 78 1278 5 HOH HOH . J 4 HOH B 79 1279 4 HOH HOH . J 4 HOH B 80 1280 166 HOH HOH . J 4 HOH B 81 1281 8 HOH HOH . J 4 HOH B 82 1282 128 HOH HOH . J 4 HOH B 83 1283 155 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x -0.963 _atom_site.Cartn_y -15.03 _atom_site.Cartn_z 22.941 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 37.2 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 1101 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #