data_5LPP
#
_model_server_result.job_id            AVClwpZ1zqmEMixppDqrzA 
_model_server_result.datetime_utc      '2024-12-01 05:03:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5lpp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":402}' 
#
_entry.id    5LPP 
#
_exptl.entry_id    5LPP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              430.458 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            4-[2-[(3~{a}~{R},4~{R},6~{R},6~{a}~{R})-4-methoxy-2,2-dimethyl-3~{a},4,6,6~{a}-tetrahydrofuro[3,4-d][1,3]dioxol-6-yl]ethyl]-6-azanyl-2-(methylamino)-1,7-dihydroimidazo[4,5-g]quinazolin-8-one 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          93.88 
_cell.angle_gamma         90 
_cell.entry_id            5LPP 
_cell.length_a            85.423 
_cell.length_b            64.443 
_cell.length_c            71.223 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5LPP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_755 -x+2,y,-z -1 0 0 0 1 0 0 0 -1 170.846 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 318 A CYS 318 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? 
metalc ? metalc2 A SG CYS 320 A CYS 320 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? 
metalc ? metalc3 A SG CYS 323 A CYS 323 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? 
metalc ? metalc4 A ND1 HIS 349 A HIS 349 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? 
#
_chem_comp.formula           'C20 H26 N6 O5' 
_chem_comp.formula_weight    430.458 
_chem_comp.id                72C 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              4-[2-[(3~{a}~{R},4~{R},6~{R},6~{a}~{R})-4-methoxy-2,2-dimethyl-3~{a},4,6,6~{a}-tetrahydrofuro[3,4-d][1,3]dioxol-6-yl]ethyl]-6-azanyl-2-(methylamino)-1,7-dihydroimidazo[4,5-g]quinazolin-8-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N3 C6 72C sing 1 n n 
N2 C6 72C sing 2 n n 
N2 C5 72C sing 3 n n 
O C5 72C doub 4 n n 
C6 N4 72C doub 5 n n 
C5 C4 72C sing 6 n n 
N4 C7 72C sing 7 n n 
C4 C7 72C doub 8 n y 
C4 C3 72C sing 9 n y 
C7 C8 72C sing 10 n y 
C3 C2 72C doub 11 n y 
C8 C9 72C sing 12 n n 
C8 C19 72C doub 13 n y 
C9 C10 72C sing 14 n n 
C2 C19 72C sing 15 n y 
C2 N1 72C sing 16 n y 
C19 N5 72C sing 17 n y 
N1 C1 72C sing 18 n y 
C10 C11 72C sing 19 n n 
C13 O2 72C sing 20 n n 
O1 C11 72C sing 21 n n 
O1 C12 72C sing 22 n n 
N5 C1 72C doub 23 n y 
C1 N 72C sing 24 n n 
C11 C18 72C sing 25 n n 
O2 C12 72C sing 26 n n 
C12 C14 72C sing 27 n n 
N C 72C sing 28 n n 
C18 C14 72C sing 29 n n 
C18 O4 72C sing 30 n n 
C14 O3 72C sing 31 n n 
O4 C15 72C sing 32 n n 
O3 C15 72C sing 33 n n 
C15 C17 72C sing 34 n n 
C15 C16 72C sing 35 n n 
C10 H1 72C sing 36 n n 
C10 H2 72C sing 37 n n 
C14 H3 72C sing 38 n n 
C13 H4 72C sing 39 n n 
C13 H5 72C sing 40 n n 
C13 H6 72C sing 41 n n 
C12 H7 72C sing 42 n n 
C11 H8 72C sing 43 n n 
C9 H9 72C sing 44 n n 
C9 H10 72C sing 45 n n 
N1 H11 72C sing 46 n n 
C3 H12 72C sing 47 n n 
N2 H13 72C sing 48 n n 
N3 H14 72C sing 49 n n 
N3 H15 72C sing 50 n n 
N H17 72C sing 51 n n 
C H18 72C sing 52 n n 
C H19 72C sing 53 n n 
C H20 72C sing 54 n n 
C18 H21 72C sing 55 n n 
C16 H22 72C sing 56 n n 
C16 H23 72C sing 57 n n 
C16 H24 72C sing 58 n n 
C17 H25 72C sing 59 n n 
C17 H26 72C sing 60 n n 
C17 H27 72C sing 61 n n 
#
_atom_sites.entry_id                     5LPP 
_atom_sites.fract_transf_matrix[1][1]    0.011706 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000794 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015518 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014073 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 401 1 ZN ZN . 
C 3 72C A 1 402 1 72C 115 . 
D 4 HOH A 1 501 15 HOH HOH . 
D 4 HOH A 2 502 140 HOH HOH . 
D 4 HOH A 3 503 99 HOH HOH . 
D 4 HOH A 4 504 92 HOH HOH . 
D 4 HOH A 5 505 108 HOH HOH . 
D 4 HOH A 6 506 208 HOH HOH . 
D 4 HOH A 7 507 65 HOH HOH . 
D 4 HOH A 8 508 164 HOH HOH . 
D 4 HOH A 9 509 162 HOH HOH . 
D 4 HOH A 10 510 7 HOH HOH . 
D 4 HOH A 11 511 137 HOH HOH . 
D 4 HOH A 12 512 79 HOH HOH . 
D 4 HOH A 13 513 24 HOH HOH . 
D 4 HOH A 14 514 14 HOH HOH . 
D 4 HOH A 15 515 89 HOH HOH . 
D 4 HOH A 16 516 54 HOH HOH . 
D 4 HOH A 17 517 16 HOH HOH . 
D 4 HOH A 18 518 74 HOH HOH . 
D 4 HOH A 19 519 62 HOH HOH . 
D 4 HOH A 20 520 40 HOH HOH . 
D 4 HOH A 21 521 3 HOH HOH . 
D 4 HOH A 22 522 115 HOH HOH . 
D 4 HOH A 23 523 18 HOH HOH . 
D 4 HOH A 24 524 185 HOH HOH . 
D 4 HOH A 25 525 2 HOH HOH . 
D 4 HOH A 26 526 68 HOH HOH . 
D 4 HOH A 27 527 70 HOH HOH . 
D 4 HOH A 28 528 191 HOH HOH . 
D 4 HOH A 29 529 122 HOH HOH . 
D 4 HOH A 30 530 78 HOH HOH . 
D 4 HOH A 31 531 134 HOH HOH . 
D 4 HOH A 32 532 25 HOH HOH . 
D 4 HOH A 33 533 204 HOH HOH . 
D 4 HOH A 34 534 147 HOH HOH . 
D 4 HOH A 35 535 81 HOH HOH . 
D 4 HOH A 36 536 17 HOH HOH . 
D 4 HOH A 37 537 60 HOH HOH . 
D 4 HOH A 38 538 39 HOH HOH . 
D 4 HOH A 39 539 53 HOH HOH . 
D 4 HOH A 40 540 27 HOH HOH . 
D 4 HOH A 41 541 19 HOH HOH . 
D 4 HOH A 42 542 107 HOH HOH . 
D 4 HOH A 43 543 21 HOH HOH . 
D 4 HOH A 44 544 12 HOH HOH . 
D 4 HOH A 45 545 6 HOH HOH . 
D 4 HOH A 46 546 33 HOH HOH . 
D 4 HOH A 47 547 136 HOH HOH . 
D 4 HOH A 48 548 210 HOH HOH . 
D 4 HOH A 49 549 37 HOH HOH . 
D 4 HOH A 50 550 170 HOH HOH . 
D 4 HOH A 51 551 118 HOH HOH . 
D 4 HOH A 52 552 141 HOH HOH . 
D 4 HOH A 53 553 151 HOH HOH . 
D 4 HOH A 54 554 48 HOH HOH . 
D 4 HOH A 55 555 209 HOH HOH . 
D 4 HOH A 56 556 100 HOH HOH . 
D 4 HOH A 57 557 58 HOH HOH . 
D 4 HOH A 58 558 83 HOH HOH . 
D 4 HOH A 59 559 226 HOH HOH . 
D 4 HOH A 60 560 158 HOH HOH . 
D 4 HOH A 61 561 47 HOH HOH . 
D 4 HOH A 62 562 80 HOH HOH . 
D 4 HOH A 63 563 119 HOH HOH . 
D 4 HOH A 64 564 96 HOH HOH . 
D 4 HOH A 65 565 41 HOH HOH . 
D 4 HOH A 66 566 38 HOH HOH . 
D 4 HOH A 67 567 176 HOH HOH . 
D 4 HOH A 68 568 4 HOH HOH . 
D 4 HOH A 69 569 148 HOH HOH . 
D 4 HOH A 70 570 44 HOH HOH . 
D 4 HOH A 71 571 72 HOH HOH . 
D 4 HOH A 72 572 23 HOH HOH . 
D 4 HOH A 73 573 42 HOH HOH . 
D 4 HOH A 74 574 207 HOH HOH . 
D 4 HOH A 75 575 144 HOH HOH . 
D 4 HOH A 76 576 159 HOH HOH . 
D 4 HOH A 77 577 77 HOH HOH . 
D 4 HOH A 78 578 49 HOH HOH . 
D 4 HOH A 79 579 5 HOH HOH . 
D 4 HOH A 80 580 46 HOH HOH . 
D 4 HOH A 81 581 88 HOH HOH . 
D 4 HOH A 82 582 192 HOH HOH . 
D 4 HOH A 83 583 224 HOH HOH . 
D 4 HOH A 84 584 32 HOH HOH . 
D 4 HOH A 85 585 52 HOH HOH . 
D 4 HOH A 86 586 45 HOH HOH . 
D 4 HOH A 87 587 227 HOH HOH . 
D 4 HOH A 88 588 20 HOH HOH . 
D 4 HOH A 89 589 177 HOH HOH . 
D 4 HOH A 90 590 35 HOH HOH . 
D 4 HOH A 91 591 84 HOH HOH . 
D 4 HOH A 92 592 102 HOH HOH . 
D 4 HOH A 93 593 73 HOH HOH . 
D 4 HOH A 94 594 86 HOH HOH . 
D 4 HOH A 95 595 152 HOH HOH . 
D 4 HOH A 96 596 111 HOH HOH . 
D 4 HOH A 97 597 22 HOH HOH . 
D 4 HOH A 98 598 98 HOH HOH . 
D 4 HOH A 99 599 97 HOH HOH . 
D 4 HOH A 100 600 30 HOH HOH . 
D 4 HOH A 101 601 105 HOH HOH . 
D 4 HOH A 102 602 163 HOH HOH . 
D 4 HOH A 103 603 34 HOH HOH . 
D 4 HOH A 104 604 9 HOH HOH . 
D 4 HOH A 105 605 206 HOH HOH . 
D 4 HOH A 106 606 29 HOH HOH . 
D 4 HOH A 107 607 183 HOH HOH . 
D 4 HOH A 108 608 138 HOH HOH . 
D 4 HOH A 109 609 43 HOH HOH . 
D 4 HOH A 110 610 142 HOH HOH . 
D 4 HOH A 111 611 135 HOH HOH . 
D 4 HOH A 112 612 143 HOH HOH . 
D 4 HOH A 113 613 71 HOH HOH . 
D 4 HOH A 114 614 31 HOH HOH . 
D 4 HOH A 115 615 103 HOH HOH . 
D 4 HOH A 116 616 231 HOH HOH . 
D 4 HOH A 117 617 205 HOH HOH . 
D 4 HOH A 118 618 28 HOH HOH . 
D 4 HOH A 119 619 184 HOH HOH . 
D 4 HOH A 120 620 75 HOH HOH . 
D 4 HOH A 121 621 228 HOH HOH . 
D 4 HOH A 122 622 154 HOH HOH . 
D 4 HOH A 123 623 63 HOH HOH . 
D 4 HOH A 124 624 165 HOH HOH . 
D 4 HOH A 125 625 124 HOH HOH . 
D 4 HOH A 126 626 66 HOH HOH . 
D 4 HOH A 127 627 93 HOH HOH . 
D 4 HOH A 128 628 218 HOH HOH . 
D 4 HOH A 129 629 161 HOH HOH . 
D 4 HOH A 130 630 26 HOH HOH . 
D 4 HOH A 131 631 234 HOH HOH . 
D 4 HOH A 132 632 61 HOH HOH . 
D 4 HOH A 133 633 155 HOH HOH . 
D 4 HOH A 134 634 36 HOH HOH . 
D 4 HOH A 135 635 94 HOH HOH . 
D 4 HOH A 136 636 106 HOH HOH . 
D 4 HOH A 137 637 166 HOH HOH . 
D 4 HOH A 138 638 186 HOH HOH . 
D 4 HOH A 139 639 235 HOH HOH . 
D 4 HOH A 140 640 217 HOH HOH . 
D 4 HOH A 141 641 150 HOH HOH . 
D 4 HOH A 142 642 149 HOH HOH . 
D 4 HOH A 143 643 214 HOH HOH . 
D 4 HOH A 144 644 157 HOH HOH . 
D 4 HOH A 145 645 87 HOH HOH . 
D 4 HOH A 146 646 232 HOH HOH . 
D 4 HOH A 147 647 233 HOH HOH . 
D 4 HOH A 148 648 90 HOH HOH . 
D 4 HOH A 149 649 195 HOH HOH . 
D 4 HOH A 150 650 182 HOH HOH . 
D 4 HOH A 151 651 171 HOH HOH . 
D 4 HOH A 152 652 222 HOH HOH . 
D 4 HOH A 153 653 125 HOH HOH . 
D 4 HOH A 154 654 174 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 72C . . . C 3 98.708 16.111 19.024 0.9 45.52 ? C10 72C 402 A 1 
HETATM 2 C C15 72C . . . C 3 94.589 14.829 16.923 0.9 57.25 ? C15 72C 402 A 1 
HETATM 3 C C14 72C . . . C 3 96.661 15.725 16.492 0.9 56.05 ? C14 72C 402 A 1 
HETATM 4 C C12 72C . . . C 3 96.396 17.172 16.904 0.9 54.84 ? C12 72C 402 A 1 
HETATM 5 C C11 72C . . . C 3 97.209 16.025 18.816 0.9 51.02 ? C11 72C 402 A 1 
HETATM 6 C C8 72C . . . C 3 100.53 17.476 20.172 1 35.09 ? C8 72C 402 A 1 
HETATM 7 C C9 72C . . . C 3 99.063 17.365 19.813 1 41.12 ? C9 72C 402 A 1 
HETATM 8 N N1 72C . . . C 3 103.519 18.52 18.436 1 37.34 ? N1 72C 402 A 1 
HETATM 9 O O3 72C . . . C 3 95.509 15.158 15.877 0.9 57.04 ? O3 72C 402 A 1 
HETATM 10 C C1 72C . . . C 3 102.641 18.455 17.447 1 35.95 ? C1 72C 402 A 1 
HETATM 11 C C2 72C . . . C 3 102.809 18.136 19.571 1 34.22 ? C2 72C 402 A 1 
HETATM 12 C C3 72C . . . C 3 103.201 18.136 20.91 1 33.78 ? C3 72C 402 A 1 
HETATM 13 C C4 72C . . . C 3 102.251 17.814 21.878 1 33.72 ? C4 72C 402 A 1 
HETATM 14 C C5 72C . . . C 3 102.576 17.923 23.309 1 33.18 ? C5 72C 402 A 1 
HETATM 15 C C6 72C . . . C 3 100.282 17.256 23.733 1 30.65 ? C6 72C 402 A 1 
HETATM 16 C C7 72C . . . C 3 100.946 17.458 21.51 1 33.83 ? C7 72C 402 A 1 
HETATM 17 O O 72C . . . C 3 103.666 18.289 23.743 1 31.16 ? O 72C 402 A 1 
HETATM 18 N N2 72C . . . C 3 101.533 17.627 24.153 1 28.91 ? N2 72C 402 A 1 
HETATM 19 N N3 72C . . . C 3 99.371 16.988 24.674 1 31.39 ? N3 72C 402 A 1 
HETATM 20 N N4 72C . . . C 3 99.949 17.159 22.448 1 32.84 ? N4 72C 402 A 1 
HETATM 21 C C19 72C . . . C 3 101.486 17.816 19.214 1 35.6 ? C19 72C 402 A 1 
HETATM 22 N N5 72C . . . C 3 101.425 18.03 17.845 1 35.34 ? N5 72C 402 A 1 
HETATM 23 N N 72C . . . C 3 102.915 18.836 16.196 1 35.67 ? N 72C 402 A 1 
HETATM 24 C C 72C . . . C 3 101.944 18.824 15.12 1 33.1 ? C 72C 402 A 1 
HETATM 25 C C18 72C . . . C 3 96.747 14.97 17.814 0.9 54.87 ? C18 72C 402 A 1 
HETATM 26 O O4 72C . . . C 3 95.398 14.589 18.085 0.9 57.08 ? O4 72C 402 A 1 
HETATM 27 O O1 72C . . . C 3 96.786 17.29 18.258 0.9 53.26 ? O1 72C 402 A 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           336 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           27 
#