data_5LPQ # _model_server_result.job_id 5etjLyIcxe1PDUGhxowBNg _model_server_result.datetime_utc '2024-11-15 05:38:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5lpq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":402}' # _entry.id 5LPQ # _exptl.entry_id 5LPQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 430.458 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[2-[(3~{a}~{R},4~{R},6~{R},6~{a}~{R})-4-methoxy-2,2-dimethyl-3~{a},4,6,6~{a}-tetrahydrofuro[3,4-d][1,3]dioxol-6-yl]ethyl]-6-azanyl-2-(methylamino)-1,7-dihydroimidazo[4,5-g]quinazolin-8-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.72 _cell.angle_gamma 90 _cell.entry_id 5LPQ _cell.length_a 68.9 _cell.length_b 78.851 _cell.length_c 84.943 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LPQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 318 A CYS 318 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? metalc ? metalc2 A SG CYS 320 A CYS 320 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc3 A SG CYS 323 A CYS 323 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc4 A ND1 HIS 349 A HIS 349 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc5 B SG CYS 318 B CYS 318 1_555 E ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc6 B SG CYS 320 B CYS 320 1_555 E ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc7 B SG CYS 323 B CYS 323 1_555 E ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc8 B ND1 HIS 349 B HIS 349 1_555 E ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? # _chem_comp.formula 'C20 H26 N6 O5' _chem_comp.formula_weight 430.458 _chem_comp.id 72C _chem_comp.mon_nstd_flag . _chem_comp.name 4-[2-[(3~{a}~{R},4~{R},6~{R},6~{a}~{R})-4-methoxy-2,2-dimethyl-3~{a},4,6,6~{a}-tetrahydrofuro[3,4-d][1,3]dioxol-6-yl]ethyl]-6-azanyl-2-(methylamino)-1,7-dihydroimidazo[4,5-g]quinazolin-8-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N3 C6 72C sing 1 n n N2 C6 72C sing 2 n n N2 C5 72C sing 3 n n O C5 72C doub 4 n n C6 N4 72C doub 5 n n C5 C4 72C sing 6 n n N4 C7 72C sing 7 n n C4 C7 72C doub 8 n y C4 C3 72C sing 9 n y C7 C8 72C sing 10 n y C3 C2 72C doub 11 n y C8 C9 72C sing 12 n n C8 C19 72C doub 13 n y C9 C10 72C sing 14 n n C2 C19 72C sing 15 n y C2 N1 72C sing 16 n y C19 N5 72C sing 17 n y N1 C1 72C sing 18 n y C10 C11 72C sing 19 n n C13 O2 72C sing 20 n n O1 C11 72C sing 21 n n O1 C12 72C sing 22 n n N5 C1 72C doub 23 n y C1 N 72C sing 24 n n C11 C18 72C sing 25 n n O2 C12 72C sing 26 n n C12 C14 72C sing 27 n n N C 72C sing 28 n n C18 C14 72C sing 29 n n C18 O4 72C sing 30 n n C14 O3 72C sing 31 n n O4 C15 72C sing 32 n n O3 C15 72C sing 33 n n C15 C17 72C sing 34 n n C15 C16 72C sing 35 n n C10 H1 72C sing 36 n n C10 H2 72C sing 37 n n C14 H3 72C sing 38 n n C13 H4 72C sing 39 n n C13 H5 72C sing 40 n n C13 H6 72C sing 41 n n C12 H7 72C sing 42 n n C11 H8 72C sing 43 n n C9 H9 72C sing 44 n n C9 H10 72C sing 45 n n N1 H11 72C sing 46 n n C3 H12 72C sing 47 n n N2 H13 72C sing 48 n n N3 H14 72C sing 49 n n N3 H15 72C sing 50 n n N H17 72C sing 51 n n C H18 72C sing 52 n n C H19 72C sing 53 n n C H20 72C sing 54 n n C18 H21 72C sing 55 n n C16 H22 72C sing 56 n n C16 H23 72C sing 57 n n C16 H24 72C sing 58 n n C17 H25 72C sing 59 n n C17 H26 72C sing 60 n n C17 H27 72C sing 61 n n # _atom_sites.entry_id 5LPQ _atom_sites.fract_transf_matrix[1][1] 0.014514 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005203 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012682 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012506 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 401 1 ZN ZN . D 3 72C A 1 402 3 72C 115 . E 2 ZN B 1 401 2 ZN ZN . F 3 72C B 1 402 2 72C 115 . G 4 HOH A 1 501 87 HOH HOH . G 4 HOH A 2 502 79 HOH HOH . G 4 HOH A 3 503 26 HOH HOH . G 4 HOH A 4 504 202 HOH HOH . G 4 HOH A 5 505 5 HOH HOH . G 4 HOH A 6 506 181 HOH HOH . G 4 HOH A 7 507 16 HOH HOH . G 4 HOH A 8 508 209 HOH HOH . G 4 HOH A 9 509 92 HOH HOH . G 4 HOH A 10 510 177 HOH HOH . G 4 HOH A 11 511 141 HOH HOH . G 4 HOH A 12 512 149 HOH HOH . G 4 HOH A 13 513 150 HOH HOH . G 4 HOH A 14 514 179 HOH HOH . G 4 HOH A 15 515 146 HOH HOH . G 4 HOH A 16 516 147 HOH HOH . G 4 HOH A 17 517 77 HOH HOH . G 4 HOH A 18 518 27 HOH HOH . G 4 HOH A 19 519 14 HOH HOH . G 4 HOH A 20 520 142 HOH HOH . G 4 HOH A 21 521 168 HOH HOH . G 4 HOH A 22 522 58 HOH HOH . G 4 HOH A 23 523 81 HOH HOH . G 4 HOH A 24 524 6 HOH HOH . G 4 HOH A 25 525 59 HOH HOH . G 4 HOH A 26 526 199 HOH HOH . G 4 HOH A 27 527 11 HOH HOH . G 4 HOH A 28 528 175 HOH HOH . G 4 HOH A 29 529 173 HOH HOH . G 4 HOH A 30 530 106 HOH HOH . G 4 HOH A 31 531 174 HOH HOH . G 4 HOH A 32 532 95 HOH HOH . G 4 HOH A 33 533 224 HOH HOH . G 4 HOH A 34 534 78 HOH HOH . G 4 HOH A 35 535 225 HOH HOH . G 4 HOH A 36 536 110 HOH HOH . G 4 HOH A 37 537 60 HOH HOH . G 4 HOH A 38 538 157 HOH HOH . G 4 HOH A 39 539 205 HOH HOH . G 4 HOH A 40 540 153 HOH HOH . G 4 HOH A 41 541 178 HOH HOH . G 4 HOH A 42 542 105 HOH HOH . G 4 HOH A 43 543 111 HOH HOH . G 4 HOH A 44 544 162 HOH HOH . G 4 HOH A 45 545 12 HOH HOH . G 4 HOH A 46 546 2 HOH HOH . G 4 HOH A 47 547 86 HOH HOH . G 4 HOH A 48 548 159 HOH HOH . G 4 HOH A 49 549 200 HOH HOH . G 4 HOH A 50 550 74 HOH HOH . G 4 HOH A 51 551 13 HOH HOH . G 4 HOH A 52 552 97 HOH HOH . G 4 HOH A 53 553 104 HOH HOH . G 4 HOH A 54 554 156 HOH HOH . G 4 HOH A 55 555 164 HOH HOH . G 4 HOH A 56 556 91 HOH HOH . G 4 HOH A 57 557 158 HOH HOH . G 4 HOH A 58 558 143 HOH HOH . G 4 HOH A 59 559 204 HOH HOH . G 4 HOH A 60 560 180 HOH HOH . G 4 HOH A 61 561 101 HOH HOH . G 4 HOH A 62 562 21 HOH HOH . G 4 HOH A 63 563 172 HOH HOH . G 4 HOH A 64 564 222 HOH HOH . G 4 HOH A 65 565 170 HOH HOH . H 4 HOH B 1 501 217 HOH HOH . H 4 HOH B 2 502 210 HOH HOH . H 4 HOH B 3 503 125 HOH HOH . H 4 HOH B 4 504 184 HOH HOH . H 4 HOH B 5 505 166 HOH HOH . H 4 HOH B 6 506 64 HOH HOH . H 4 HOH B 7 507 220 HOH HOH . H 4 HOH B 8 508 183 HOH HOH . H 4 HOH B 9 509 71 HOH HOH . H 4 HOH B 10 510 63 HOH HOH . H 4 HOH B 11 511 39 HOH HOH . H 4 HOH B 12 512 206 HOH HOH . H 4 HOH B 13 513 151 HOH HOH . H 4 HOH B 14 514 135 HOH HOH . H 4 HOH B 15 515 122 HOH HOH . H 4 HOH B 16 516 119 HOH HOH . H 4 HOH B 17 517 50 HOH HOH . H 4 HOH B 18 518 36 HOH HOH . H 4 HOH B 19 519 117 HOH HOH . H 4 HOH B 20 520 203 HOH HOH . H 4 HOH B 21 521 213 HOH HOH . H 4 HOH B 22 522 208 HOH HOH . H 4 HOH B 23 523 114 HOH HOH . H 4 HOH B 24 524 57 HOH HOH . H 4 HOH B 25 525 182 HOH HOH . H 4 HOH B 26 526 45 HOH HOH . H 4 HOH B 27 527 51 HOH HOH . H 4 HOH B 28 528 31 HOH HOH . H 4 HOH B 29 529 186 HOH HOH . H 4 HOH B 30 530 169 HOH HOH . H 4 HOH B 31 531 214 HOH HOH . H 4 HOH B 32 532 185 HOH HOH . H 4 HOH B 33 533 54 HOH HOH . H 4 HOH B 34 534 32 HOH HOH . H 4 HOH B 35 535 29 HOH HOH . H 4 HOH B 36 536 23 HOH HOH . H 4 HOH B 37 537 187 HOH HOH . H 4 HOH B 38 538 221 HOH HOH . H 4 HOH B 39 539 198 HOH HOH . H 4 HOH B 40 540 223 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 72C . . . F 3 -24.513 -8.036 49.816 1 31.69 ? C10 72C 402 B 1 HETATM 2 C C15 72C . . . F 3 -23.582 -8.515 54.024 1 31.69 ? C15 72C 402 B 1 HETATM 3 C C14 72C . . . F 3 -21.957 -8.782 52.406 1 31.69 ? C14 72C 402 B 1 HETATM 4 C C13 72C . . . F 3 -19.983 -10.544 49.866 1 31.69 ? C13 72C 402 B 1 HETATM 5 C C12 72C . . . F 3 -21.707 -9.78 51.27 1 31.69 ? C12 72C 402 B 1 HETATM 6 C C11 72C . . . F 3 -23.717 -8.782 50.866 1 31.69 ? C11 72C 402 B 1 HETATM 7 C C8 72C . . . F 3 -26.491 -8.695 48.377 1 31.69 ? C8 72C 402 B 1 HETATM 8 C C9 72C . . . F 3 -25.038 -8.952 48.713 1 31.69 ? C9 72C 402 B 1 HETATM 9 N N1 72C . . . F 3 -29.673 -9.823 49.667 1 31.69 ? N1 72C 402 B 1 HETATM 10 O O3 72C . . . F 3 -22.63 -9.432 53.477 1 31.69 ? O3 72C 402 B 1 HETATM 11 C C1 72C . . . F 3 -28.827 -10.324 50.552 1 31.69 ? C1 72C 402 B 1 HETATM 12 C C2 72C . . . F 3 -28.867 -9.16 48.742 1 31.69 ? C2 72C 402 B 1 HETATM 13 C C3 72C . . . F 3 -29.225 -8.384 47.64 1 31.69 ? C3 72C 402 B 1 HETATM 14 C C4 72C . . . F 3 -28.215 -7.735 46.931 1 31.69 ? C4 72C 402 B 1 HETATM 15 C C5 72C . . . F 3 -28.546 -6.842 45.814 1 31.69 ? C5 72C 402 B 1 HETATM 16 C C6 72C . . . F 3 -26.17 -6.409 45.65 1 31.69 ? C6 72C 402 B 1 HETATM 17 C C7 72C . . . F 3 -26.869 -7.886 47.298 1 31.69 ? C7 72C 402 B 1 HETATM 18 O O 72C . . . F 3 -29.684 -6.648 45.396 1 31.69 ? O 72C 402 B 1 HETATM 19 N N2 72C . . . F 3 -27.462 -6.224 45.242 1 31.69 ? N2 72C 402 B 1 HETATM 20 N N3 72C . . . F 3 -25.221 -5.735 44.997 1 31.69 ? N3 72C 402 B 1 HETATM 21 N N4 72C . . . F 3 -25.837 -7.22 46.653 1 31.69 ? N4 72C 402 B 1 HETATM 22 C C19 72C . . . F 3 -27.518 -9.306 49.105 1 31.69 ? C19 72C 402 B 1 HETATM 23 N N5 72C . . . F 3 -27.534 -10.058 50.261 1 31.69 ? N5 72C 402 B 1 HETATM 24 N N 72C . . . F 3 -29.2 -10.952 51.665 1 31.69 ? N 72C 402 B 1 HETATM 25 C C 72C . . . F 3 -28.271 -11.38 52.694 1 31.69 ? C 72C 402 B 1 HETATM 26 C C18 72C . . . F 3 -23.025 -7.853 51.852 1 31.69 ? C18 72C 402 B 1 HETATM 27 O O4 72C . . . F 3 -23.871 -7.587 52.97 1 31.69 ? O4 72C 402 B 1 HETATM 28 C C16 72C . . . F 3 -22.962 -7.78 55.182 1 31.69 ? C16 72C 402 B 1 HETATM 29 C C17 72C . . . F 3 -24.837 -9.261 54.397 1 31.69 ? C17 72C 402 B 1 HETATM 30 O O1 72C . . . F 3 -22.616 -9.467 50.229 1 31.69 ? O1 72C 402 B 1 HETATM 31 O O2 72C . . . F 3 -20.376 -9.626 50.873 1 31.69 ? O2 72C 402 B 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 248 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #