data_5LPS
#
_model_server_result.job_id            dROp0YgHxXFZ4JolGZWj3w 
_model_server_result.datetime_utc      '2025-01-10 07:43:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5lps 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":402}' 
#
_entry.id    5LPS 
#
_exptl.entry_id    5LPS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          93.62 
_cell.angle_gamma         90 
_cell.entry_id            5LPS 
_cell.length_a            84.951 
_cell.length_b            64.573 
_cell.length_c            71.001 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5LPS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_755 -x+2,y,-z -1 0 0 0 1 0 0 0 -1 169.902 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   metalc 
_struct_conn.details                        ? 
_struct_conn.id                             metalc1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            ND1 
_struct_conn.ptnr1_label_comp_id            HIS 
_struct_conn.ptnr1_label_seq_id             349 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             HIS 
_struct_conn.ptnr1_auth_seq_id              349 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            D 
_struct_conn.ptnr2_label_atom_id            ZN 
_struct_conn.ptnr2_label_comp_id            ZN 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             ZN 
_struct_conn.ptnr2_auth_seq_id              403 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        A 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.662 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 149 n n 
C1 C2 EDO sing 150 n n 
C1 H11 EDO sing 151 n n 
C1 H12 EDO sing 152 n n 
O1 HO1 EDO sing 153 n n 
C2 O2 EDO sing 154 n n 
C2 H21 EDO sing 155 n n 
C2 H22 EDO sing 156 n n 
O2 HO2 EDO sing 157 n n 
#
_atom_sites.entry_id                     5LPS 
_atom_sites.fract_transf_matrix[1][1]    0.011771 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000744 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015486 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014112 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 726 A 1 401 1 726 TPF . 
C 3 EDO A 1 402 1 EDO EDO . 
D 4 ZN A 1 403 1 ZN ZN . 
E 5 HOH A 1 501 220 HOH HOH . 
E 5 HOH A 2 502 42 HOH HOH . 
E 5 HOH A 3 503 25 HOH HOH . 
E 5 HOH A 4 504 39 HOH HOH . 
E 5 HOH A 5 505 171 HOH HOH . 
E 5 HOH A 6 506 145 HOH HOH . 
E 5 HOH A 7 507 155 HOH HOH . 
E 5 HOH A 8 508 347 HOH HOH . 
E 5 HOH A 9 509 443 HOH HOH . 
E 5 HOH A 10 510 200 HOH HOH . 
E 5 HOH A 11 511 65 HOH HOH . 
E 5 HOH A 12 512 58 HOH HOH . 
E 5 HOH A 13 513 38 HOH HOH . 
E 5 HOH A 14 514 261 HOH HOH . 
E 5 HOH A 15 515 30 HOH HOH . 
E 5 HOH A 16 516 62 HOH HOH . 
E 5 HOH A 17 517 88 HOH HOH . 
E 5 HOH A 18 518 106 HOH HOH . 
E 5 HOH A 19 519 431 HOH HOH . 
E 5 HOH A 20 520 126 HOH HOH . 
E 5 HOH A 21 521 274 HOH HOH . 
E 5 HOH A 22 522 176 HOH HOH . 
E 5 HOH A 23 523 32 HOH HOH . 
E 5 HOH A 24 524 50 HOH HOH . 
E 5 HOH A 25 525 115 HOH HOH . 
E 5 HOH A 26 526 10 HOH HOH . 
E 5 HOH A 27 527 101 HOH HOH . 
E 5 HOH A 28 528 437 HOH HOH . 
E 5 HOH A 29 529 69 HOH HOH . 
E 5 HOH A 30 530 24 HOH HOH . 
E 5 HOH A 31 531 119 HOH HOH . 
E 5 HOH A 32 532 79 HOH HOH . 
E 5 HOH A 33 533 33 HOH HOH . 
E 5 HOH A 34 534 146 HOH HOH . 
E 5 HOH A 35 535 29 HOH HOH . 
E 5 HOH A 36 536 40 HOH HOH . 
E 5 HOH A 37 537 80 HOH HOH . 
E 5 HOH A 38 538 57 HOH HOH . 
E 5 HOH A 39 539 425 HOH HOH . 
E 5 HOH A 40 540 208 HOH HOH . 
E 5 HOH A 41 541 91 HOH HOH . 
E 5 HOH A 42 542 21 HOH HOH . 
E 5 HOH A 43 543 43 HOH HOH . 
E 5 HOH A 44 544 98 HOH HOH . 
E 5 HOH A 45 545 195 HOH HOH . 
E 5 HOH A 46 546 72 HOH HOH . 
E 5 HOH A 47 547 77 HOH HOH . 
E 5 HOH A 48 548 63 HOH HOH . 
E 5 HOH A 49 549 151 HOH HOH . 
E 5 HOH A 50 550 203 HOH HOH . 
E 5 HOH A 51 551 46 HOH HOH . 
E 5 HOH A 52 552 137 HOH HOH . 
E 5 HOH A 53 553 175 HOH HOH . 
E 5 HOH A 54 554 158 HOH HOH . 
E 5 HOH A 55 555 142 HOH HOH . 
E 5 HOH A 56 556 12 HOH HOH . 
E 5 HOH A 57 557 15 HOH HOH . 
E 5 HOH A 58 558 5 HOH HOH . 
E 5 HOH A 59 559 123 HOH HOH . 
E 5 HOH A 60 560 51 HOH HOH . 
E 5 HOH A 61 561 213 HOH HOH . 
E 5 HOH A 62 562 411 HOH HOH . 
E 5 HOH A 63 563 173 HOH HOH . 
E 5 HOH A 64 564 201 HOH HOH . 
E 5 HOH A 65 565 94 HOH HOH . 
E 5 HOH A 66 566 53 HOH HOH . 
E 5 HOH A 67 567 236 HOH HOH . 
E 5 HOH A 68 568 2 HOH HOH . 
E 5 HOH A 69 569 37 HOH HOH . 
E 5 HOH A 70 570 28 HOH HOH . 
E 5 HOH A 71 571 127 HOH HOH . 
E 5 HOH A 72 572 132 HOH HOH . 
E 5 HOH A 73 573 19 HOH HOH . 
E 5 HOH A 74 574 156 HOH HOH . 
E 5 HOH A 75 575 313 HOH HOH . 
E 5 HOH A 76 576 136 HOH HOH . 
E 5 HOH A 77 577 240 HOH HOH . 
E 5 HOH A 78 578 74 HOH HOH . 
E 5 HOH A 79 579 16 HOH HOH . 
E 5 HOH A 80 580 390 HOH HOH . 
E 5 HOH A 81 581 18 HOH HOH . 
E 5 HOH A 82 582 244 HOH HOH . 
E 5 HOH A 83 583 125 HOH HOH . 
E 5 HOH A 84 584 86 HOH HOH . 
E 5 HOH A 85 585 3 HOH HOH . 
E 5 HOH A 86 586 169 HOH HOH . 
E 5 HOH A 87 587 4 HOH HOH . 
E 5 HOH A 88 588 104 HOH HOH . 
E 5 HOH A 89 589 7 HOH HOH . 
E 5 HOH A 90 590 178 HOH HOH . 
E 5 HOH A 91 591 41 HOH HOH . 
E 5 HOH A 92 592 34 HOH HOH . 
E 5 HOH A 93 593 17 HOH HOH . 
E 5 HOH A 94 594 95 HOH HOH . 
E 5 HOH A 95 595 6 HOH HOH . 
E 5 HOH A 96 596 159 HOH HOH . 
E 5 HOH A 97 597 64 HOH HOH . 
E 5 HOH A 98 598 179 HOH HOH . 
E 5 HOH A 99 599 73 HOH HOH . 
E 5 HOH A 100 600 78 HOH HOH . 
E 5 HOH A 101 601 26 HOH HOH . 
E 5 HOH A 102 602 120 HOH HOH . 
E 5 HOH A 103 603 110 HOH HOH . 
E 5 HOH A 104 604 234 HOH HOH . 
E 5 HOH A 105 605 138 HOH HOH . 
E 5 HOH A 106 606 13 HOH HOH . 
E 5 HOH A 107 607 140 HOH HOH . 
E 5 HOH A 108 608 35 HOH HOH . 
E 5 HOH A 109 609 81 HOH HOH . 
E 5 HOH A 110 610 217 HOH HOH . 
E 5 HOH A 111 611 22 HOH HOH . 
E 5 HOH A 112 612 180 HOH HOH . 
E 5 HOH A 113 613 376 HOH HOH . 
E 5 HOH A 114 614 31 HOH HOH . 
E 5 HOH A 115 615 9 HOH HOH . 
E 5 HOH A 116 616 359 HOH HOH . 
E 5 HOH A 117 617 76 HOH HOH . 
E 5 HOH A 118 618 252 HOH HOH . 
E 5 HOH A 119 619 128 HOH HOH . 
E 5 HOH A 120 620 264 HOH HOH . 
E 5 HOH A 121 621 237 HOH HOH . 
E 5 HOH A 122 622 23 HOH HOH . 
E 5 HOH A 123 623 70 HOH HOH . 
E 5 HOH A 124 624 67 HOH HOH . 
E 5 HOH A 125 625 49 HOH HOH . 
E 5 HOH A 126 626 164 HOH HOH . 
E 5 HOH A 127 627 117 HOH HOH . 
E 5 HOH A 128 628 44 HOH HOH . 
E 5 HOH A 129 629 100 HOH HOH . 
E 5 HOH A 130 630 96 HOH HOH . 
E 5 HOH A 131 631 391 HOH HOH . 
E 5 HOH A 132 632 14 HOH HOH . 
E 5 HOH A 133 633 11 HOH HOH . 
E 5 HOH A 134 634 189 HOH HOH . 
E 5 HOH A 135 635 105 HOH HOH . 
E 5 HOH A 136 636 430 HOH HOH . 
E 5 HOH A 137 637 435 HOH HOH . 
E 5 HOH A 138 638 54 HOH HOH . 
E 5 HOH A 139 639 124 HOH HOH . 
E 5 HOH A 140 640 109 HOH HOH . 
E 5 HOH A 141 641 150 HOH HOH . 
E 5 HOH A 142 642 52 HOH HOH . 
E 5 HOH A 143 643 202 HOH HOH . 
E 5 HOH A 144 644 440 HOH HOH . 
E 5 HOH A 145 645 48 HOH HOH . 
E 5 HOH A 146 646 284 HOH HOH . 
E 5 HOH A 147 647 434 HOH HOH . 
E 5 HOH A 148 648 103 HOH HOH . 
E 5 HOH A 149 649 8 HOH HOH . 
E 5 HOH A 150 650 60 HOH HOH . 
E 5 HOH A 151 651 61 HOH HOH . 
E 5 HOH A 152 652 442 HOH HOH . 
E 5 HOH A 153 653 20 HOH HOH . 
E 5 HOH A 154 654 59 HOH HOH . 
E 5 HOH A 155 655 212 HOH HOH . 
E 5 HOH A 156 656 428 HOH HOH . 
E 5 HOH A 157 657 97 HOH HOH . 
E 5 HOH A 158 658 133 HOH HOH . 
E 5 HOH A 159 659 185 HOH HOH . 
E 5 HOH A 160 660 216 HOH HOH . 
E 5 HOH A 161 661 102 HOH HOH . 
E 5 HOH A 162 662 68 HOH HOH . 
E 5 HOH A 163 663 113 HOH HOH . 
E 5 HOH A 164 664 143 HOH HOH . 
E 5 HOH A 165 665 172 HOH HOH . 
E 5 HOH A 166 666 89 HOH HOH . 
E 5 HOH A 167 667 108 HOH HOH . 
E 5 HOH A 168 668 371 HOH HOH . 
E 5 HOH A 169 669 47 HOH HOH . 
E 5 HOH A 170 670 294 HOH HOH . 
E 5 HOH A 171 671 157 HOH HOH . 
E 5 HOH A 172 672 114 HOH HOH . 
E 5 HOH A 173 673 84 HOH HOH . 
E 5 HOH A 174 674 251 HOH HOH . 
E 5 HOH A 175 675 148 HOH HOH . 
E 5 HOH A 176 676 66 HOH HOH . 
E 5 HOH A 177 677 238 HOH HOH . 
E 5 HOH A 178 678 385 HOH HOH . 
E 5 HOH A 179 679 235 HOH HOH . 
E 5 HOH A 180 680 118 HOH HOH . 
E 5 HOH A 181 681 55 HOH HOH . 
E 5 HOH A 182 682 183 HOH HOH . 
E 5 HOH A 183 683 302 HOH HOH . 
E 5 HOH A 184 684 248 HOH HOH . 
E 5 HOH A 185 685 296 HOH HOH . 
E 5 HOH A 186 686 400 HOH HOH . 
E 5 HOH A 187 687 297 HOH HOH . 
E 5 HOH A 188 688 286 HOH HOH . 
E 5 HOH A 189 689 255 HOH HOH . 
E 5 HOH A 190 690 419 HOH HOH . 
E 5 HOH A 191 691 258 HOH HOH . 
E 5 HOH A 192 692 300 HOH HOH . 
E 5 HOH A 193 693 305 HOH HOH . 
E 5 HOH A 194 694 222 HOH HOH . 
E 5 HOH A 195 695 82 HOH HOH . 
E 5 HOH A 196 696 239 HOH HOH . 
E 5 HOH A 197 697 218 HOH HOH . 
E 5 HOH A 198 698 246 HOH HOH . 
E 5 HOH A 199 699 90 HOH HOH . 
E 5 HOH A 200 700 292 HOH HOH . 
E 5 HOH A 201 701 298 HOH HOH . 
E 5 HOH A 202 702 116 HOH HOH . 
E 5 HOH A 203 703 275 HOH HOH . 
E 5 HOH A 204 704 130 HOH HOH . 
E 5 HOH A 205 705 441 HOH HOH . 
E 5 HOH A 206 706 93 HOH HOH . 
E 5 HOH A 207 707 422 HOH HOH . 
E 5 HOH A 208 708 186 HOH HOH . 
E 5 HOH A 209 709 392 HOH HOH . 
E 5 HOH A 210 710 205 HOH HOH . 
E 5 HOH A 211 711 427 HOH HOH . 
E 5 HOH A 212 712 256 HOH HOH . 
E 5 HOH A 213 713 111 HOH HOH . 
E 5 HOH A 214 714 388 HOH HOH . 
E 5 HOH A 215 715 188 HOH HOH . 
E 5 HOH A 216 716 107 HOH HOH . 
E 5 HOH A 217 717 282 HOH HOH . 
E 5 HOH A 218 718 268 HOH HOH . 
E 5 HOH A 219 719 351 HOH HOH . 
E 5 HOH A 220 720 355 HOH HOH . 
E 5 HOH A 221 721 226 HOH HOH . 
E 5 HOH A 222 722 269 HOH HOH . 
E 5 HOH A 223 723 71 HOH HOH . 
E 5 HOH A 224 724 147 HOH HOH . 
E 5 HOH A 225 725 260 HOH HOH . 
E 5 HOH A 226 726 242 HOH HOH . 
E 5 HOH A 227 727 438 HOH HOH . 
E 5 HOH A 228 728 121 HOH HOH . 
E 5 HOH A 229 729 283 HOH HOH . 
E 5 HOH A 230 730 219 HOH HOH . 
E 5 HOH A 231 731 426 HOH HOH . 
E 5 HOH A 232 732 281 HOH HOH . 
E 5 HOH A 233 733 265 HOH HOH . 
E 5 HOH A 234 734 165 HOH HOH . 
E 5 HOH A 235 735 439 HOH HOH . 
E 5 HOH A 236 736 168 HOH HOH . 
E 5 HOH A 237 737 221 HOH HOH . 
E 5 HOH A 238 738 436 HOH HOH . 
E 5 HOH A 239 739 198 HOH HOH . 
E 5 HOH A 240 740 225 HOH HOH . 
E 5 HOH A 241 741 36 HOH HOH . 
E 5 HOH A 242 742 131 HOH HOH . 
E 5 HOH A 243 743 401 HOH HOH . 
E 5 HOH A 244 744 134 HOH HOH . 
E 5 HOH A 245 745 333 HOH HOH . 
E 5 HOH A 246 746 290 HOH HOH . 
E 5 HOH A 247 747 153 HOH HOH . 
E 5 HOH A 248 748 433 HOH HOH . 
E 5 HOH A 249 749 227 HOH HOH . 
E 5 HOH A 250 750 334 HOH HOH . 
E 5 HOH A 251 751 206 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . C 3 108.483 -1.316 35.237 0.75 24.29 ? C1 EDO 402 A 1 
HETATM 2 O O1 EDO . . . C 3 108.15 -2.356 34.31 0.75 24.88 ? O1 EDO 402 A 1 
HETATM 3 C C2 EDO . . . C 3 109.399 -0.311 34.551 0.75 23.16 ? C2 EDO 402 A 1 
HETATM 4 O O2 EDO . . . C 3 108.721 0.218 33.414 0.75 21.07 ? O2 EDO 402 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#