data_5LPT # _model_server_result.job_id wqpc8vA7huczYdfQe3z-DA _model_server_result.datetime_utc '2025-01-10 16:11:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5lpt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":403}' # _entry.id 5LPT # _exptl.entry_id 5LPT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.72 _cell.angle_gamma 90 _cell.entry_id 5LPT _cell.length_a 68.745 _cell.length_b 78.866 _cell.length_c 84.891 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LPT _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 318 A CYS 318 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc2 A SG CYS 320 A CYS 320 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc3 A SG CYS 323 A CYS 323 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc4 A ND1 HIS 349 A HIS 349 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc5 B SG CYS 318 B CYS 318 1_555 F ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc6 B SG CYS 320 B CYS 320 1_555 F ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc7 B SG CYS 323 B CYS 323 1_555 F ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc8 B ND1 HIS 349 B HIS 349 1_555 F ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 195 n n C1 C2 GOL sing 196 n n C1 H11 GOL sing 197 n n C1 H12 GOL sing 198 n n O1 HO1 GOL sing 199 n n C2 O2 GOL sing 200 n n C2 C3 GOL sing 201 n n C2 H2 GOL sing 202 n n O2 HO2 GOL sing 203 n n C3 O3 GOL sing 204 n n C3 H31 GOL sing 205 n n C3 H32 GOL sing 206 n n O3 HO3 GOL sing 207 n n # _atom_sites.entry_id 5LPT _atom_sites.fract_transf_matrix[1][1] 0.014547 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004929 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01268 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012438 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 401 1 ZN ZN . D 3 726 A 1 402 1 726 TPF . E 4 GOL A 1 403 2 GOL GOL . F 2 ZN B 1 401 2 ZN ZN . G 3 726 B 1 402 2 726 TPF . H 4 GOL B 1 403 1 GOL GOL . I 4 GOL B 1 404 3 GOL GOL . J 5 HOH A 1 501 89 HOH HOH . J 5 HOH A 2 502 142 HOH HOH . J 5 HOH A 3 503 144 HOH HOH . J 5 HOH A 4 504 25 HOH HOH . J 5 HOH A 5 505 371 HOH HOH . J 5 HOH A 6 506 209 HOH HOH . J 5 HOH A 7 507 88 HOH HOH . J 5 HOH A 8 508 261 HOH HOH . J 5 HOH A 9 509 43 HOH HOH . J 5 HOH A 10 510 198 HOH HOH . J 5 HOH A 11 511 291 HOH HOH . J 5 HOH A 12 512 226 HOH HOH . J 5 HOH A 13 513 228 HOH HOH . J 5 HOH A 14 514 300 HOH HOH . J 5 HOH A 15 515 159 HOH HOH . J 5 HOH A 16 516 14 HOH HOH . J 5 HOH A 17 517 377 HOH HOH . J 5 HOH A 18 518 81 HOH HOH . J 5 HOH A 19 519 121 HOH HOH . J 5 HOH A 20 520 42 HOH HOH . J 5 HOH A 21 521 119 HOH HOH . J 5 HOH A 22 522 296 HOH HOH . J 5 HOH A 23 523 10 HOH HOH . J 5 HOH A 24 524 278 HOH HOH . J 5 HOH A 25 525 293 HOH HOH . J 5 HOH A 26 526 221 HOH HOH . J 5 HOH A 27 527 158 HOH HOH . J 5 HOH A 28 528 155 HOH HOH . J 5 HOH A 29 529 355 HOH HOH . J 5 HOH A 30 530 139 HOH HOH . J 5 HOH A 31 531 257 HOH HOH . J 5 HOH A 32 532 86 HOH HOH . J 5 HOH A 33 533 369 HOH HOH . J 5 HOH A 34 534 29 HOH HOH . J 5 HOH A 35 535 360 HOH HOH . J 5 HOH A 36 536 126 HOH HOH . J 5 HOH A 37 537 302 HOH HOH . J 5 HOH A 38 538 206 HOH HOH . J 5 HOH A 39 539 223 HOH HOH . J 5 HOH A 40 540 305 HOH HOH . J 5 HOH A 41 541 28 HOH HOH . J 5 HOH A 42 542 156 HOH HOH . J 5 HOH A 43 543 273 HOH HOH . J 5 HOH A 44 544 255 HOH HOH . J 5 HOH A 45 545 266 HOH HOH . J 5 HOH A 46 546 297 HOH HOH . J 5 HOH A 47 547 203 HOH HOH . J 5 HOH A 48 548 303 HOH HOH . J 5 HOH A 49 549 67 HOH HOH . J 5 HOH A 50 550 78 HOH HOH . J 5 HOH A 51 551 91 HOH HOH . J 5 HOH A 52 552 217 HOH HOH . J 5 HOH A 53 553 232 HOH HOH . J 5 HOH A 54 554 350 HOH HOH . J 5 HOH A 55 555 243 HOH HOH . J 5 HOH A 56 556 160 HOH HOH . J 5 HOH A 57 557 157 HOH HOH . J 5 HOH A 58 558 62 HOH HOH . J 5 HOH A 59 559 52 HOH HOH . J 5 HOH A 60 560 368 HOH HOH . J 5 HOH A 61 561 7 HOH HOH . J 5 HOH A 62 562 356 HOH HOH . J 5 HOH A 63 563 304 HOH HOH . J 5 HOH A 64 564 265 HOH HOH . J 5 HOH A 65 565 225 HOH HOH . J 5 HOH A 66 566 230 HOH HOH . J 5 HOH A 67 567 307 HOH HOH . J 5 HOH A 68 568 284 HOH HOH . J 5 HOH A 69 569 39 HOH HOH . J 5 HOH A 70 570 113 HOH HOH . J 5 HOH A 71 571 294 HOH HOH . J 5 HOH A 72 572 289 HOH HOH . J 5 HOH A 73 573 258 HOH HOH . J 5 HOH A 74 574 280 HOH HOH . J 5 HOH A 75 575 146 HOH HOH . J 5 HOH A 76 576 378 HOH HOH . J 5 HOH A 77 577 252 HOH HOH . J 5 HOH A 78 578 66 HOH HOH . J 5 HOH A 79 579 22 HOH HOH . J 5 HOH A 80 580 161 HOH HOH . J 5 HOH A 81 581 374 HOH HOH . J 5 HOH A 82 582 224 HOH HOH . J 5 HOH A 83 583 342 HOH HOH . J 5 HOH A 84 584 17 HOH HOH . J 5 HOH A 85 585 376 HOH HOH . J 5 HOH A 86 586 110 HOH HOH . J 5 HOH A 87 587 204 HOH HOH . J 5 HOH A 88 588 41 HOH HOH . J 5 HOH A 89 589 117 HOH HOH . J 5 HOH A 90 590 111 HOH HOH . J 5 HOH A 91 591 338 HOH HOH . J 5 HOH A 92 592 24 HOH HOH . J 5 HOH A 93 593 306 HOH HOH . J 5 HOH A 94 594 260 HOH HOH . J 5 HOH A 95 595 134 HOH HOH . J 5 HOH A 96 596 112 HOH HOH . J 5 HOH A 97 597 286 HOH HOH . J 5 HOH A 98 598 372 HOH HOH . J 5 HOH A 99 599 222 HOH HOH . J 5 HOH A 100 600 127 HOH HOH . K 5 HOH B 1 501 185 HOH HOH . K 5 HOH B 2 502 335 HOH HOH . K 5 HOH B 3 503 191 HOH HOH . K 5 HOH B 4 504 166 HOH HOH . K 5 HOH B 5 505 171 HOH HOH . K 5 HOH B 6 506 44 HOH HOH . K 5 HOH B 7 507 23 HOH HOH . K 5 HOH B 8 508 275 HOH HOH . K 5 HOH B 9 509 219 HOH HOH . K 5 HOH B 10 510 109 HOH HOH . K 5 HOH B 11 511 6 HOH HOH . K 5 HOH B 12 512 177 HOH HOH . K 5 HOH B 13 513 263 HOH HOH . K 5 HOH B 14 514 279 HOH HOH . K 5 HOH B 15 515 190 HOH HOH . K 5 HOH B 16 516 196 HOH HOH . K 5 HOH B 17 517 192 HOH HOH . K 5 HOH B 18 518 178 HOH HOH . K 5 HOH B 19 519 330 HOH HOH . K 5 HOH B 20 520 283 HOH HOH . K 5 HOH B 21 521 170 HOH HOH . K 5 HOH B 22 522 375 HOH HOH . K 5 HOH B 23 523 100 HOH HOH . K 5 HOH B 24 524 173 HOH HOH . K 5 HOH B 25 525 15 HOH HOH . K 5 HOH B 26 526 200 HOH HOH . K 5 HOH B 27 527 336 HOH HOH . K 5 HOH B 28 528 54 HOH HOH . K 5 HOH B 29 529 324 HOH HOH . K 5 HOH B 30 530 270 HOH HOH . K 5 HOH B 31 531 282 HOH HOH . K 5 HOH B 32 532 247 HOH HOH . K 5 HOH B 33 533 172 HOH HOH . K 5 HOH B 34 534 3 HOH HOH . K 5 HOH B 35 535 31 HOH HOH . K 5 HOH B 36 536 30 HOH HOH . K 5 HOH B 37 537 276 HOH HOH . K 5 HOH B 38 538 16 HOH HOH . K 5 HOH B 39 539 341 HOH HOH . K 5 HOH B 40 540 48 HOH HOH . K 5 HOH B 41 541 234 HOH HOH . K 5 HOH B 42 542 175 HOH HOH . K 5 HOH B 43 543 72 HOH HOH . K 5 HOH B 44 544 269 HOH HOH . K 5 HOH B 45 545 244 HOH HOH . K 5 HOH B 46 546 174 HOH HOH . K 5 HOH B 47 547 9 HOH HOH . K 5 HOH B 48 548 58 HOH HOH . K 5 HOH B 49 549 51 HOH HOH . K 5 HOH B 50 550 131 HOH HOH . K 5 HOH B 51 551 59 HOH HOH . K 5 HOH B 52 552 311 HOH HOH . K 5 HOH B 53 553 332 HOH HOH . K 5 HOH B 54 554 285 HOH HOH . K 5 HOH B 55 555 343 HOH HOH . K 5 HOH B 56 556 353 HOH HOH . K 5 HOH B 57 557 367 HOH HOH . K 5 HOH B 58 558 74 HOH HOH . K 5 HOH B 59 559 315 HOH HOH . K 5 HOH B 60 560 199 HOH HOH . K 5 HOH B 61 561 373 HOH HOH . K 5 HOH B 62 562 92 HOH HOH . K 5 HOH B 63 563 242 HOH HOH . K 5 HOH B 64 564 179 HOH HOH . K 5 HOH B 65 565 233 HOH HOH . K 5 HOH B 66 566 180 HOH HOH . K 5 HOH B 67 567 379 HOH HOH . K 5 HOH B 68 568 325 HOH HOH . K 5 HOH B 69 569 323 HOH HOH . K 5 HOH B 70 570 104 HOH HOH . K 5 HOH B 71 571 213 HOH HOH . K 5 HOH B 72 572 366 HOH HOH . K 5 HOH B 73 573 357 HOH HOH . K 5 HOH B 74 574 97 HOH HOH . K 5 HOH B 75 575 208 HOH HOH . K 5 HOH B 76 576 264 HOH HOH . K 5 HOH B 77 577 319 HOH HOH . K 5 HOH B 78 578 181 HOH HOH . K 5 HOH B 79 579 182 HOH HOH . K 5 HOH B 80 580 8 HOH HOH . K 5 HOH B 81 581 321 HOH HOH . K 5 HOH B 82 582 237 HOH HOH . K 5 HOH B 83 583 365 HOH HOH . K 5 HOH B 84 584 329 HOH HOH . K 5 HOH B 85 585 274 HOH HOH . K 5 HOH B 86 586 287 HOH HOH . K 5 HOH B 87 587 352 HOH HOH . K 5 HOH B 88 588 370 HOH HOH . K 5 HOH B 89 589 308 HOH HOH . K 5 HOH B 90 590 380 HOH HOH . K 5 HOH B 91 591 334 HOH HOH . K 5 HOH B 92 592 333 HOH HOH . K 5 HOH B 93 593 236 HOH HOH . K 5 HOH B 94 594 322 HOH HOH . K 5 HOH B 95 595 165 HOH HOH . K 5 HOH B 96 596 344 HOH HOH . K 5 HOH B 97 597 272 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 4 -27.996 -36.08 52.843 0.91 45.14 ? C1 GOL 403 B 1 HETATM 2 O O1 GOL . . . H 4 -28.863 -36.326 53.926 0.91 44.92 ? O1 GOL 403 B 1 HETATM 3 C C2 GOL . . . H 4 -27.108 -37.294 52.603 0.91 45.7 ? C2 GOL 403 B 1 HETATM 4 O O2 GOL . . . H 4 -26.948 -37.483 51.216 0.91 46.41 ? O2 GOL 403 B 1 HETATM 5 C C3 GOL . . . H 4 -25.737 -37.074 53.223 0.91 45.9 ? C3 GOL 403 B 1 HETATM 6 O O3 GOL . . . H 4 -24.852 -38.023 52.671 0.91 46.4 ? O3 GOL 403 B 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #