data_5LQ0 # _model_server_result.job_id brVwamYhF75J-PcD7KVyCw _model_server_result.datetime_utc '2024-10-18 16:23:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5lq0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":401}' # _entry.id 5LQ0 # _exptl.entry_id 5LQ0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5LQ0 _cell.length_a 56.45 _cell.length_b 63.47 _cell.length_c 268.91 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LQ0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 23 A ALA 23 1_555 A N PTR 24 A PTR 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C PTR 24 A PTR 24 1_555 A N GLY 25 A GLY 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 B C ALA 23 B ALA 23 1_555 B N PTR 24 B PTR 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 B C PTR 24 B PTR 24 1_555 B N GLY 25 B GLY 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? metalc ? metalc1 A O LEU 91 A LEU 91 1_555 E CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.812 ? metalc ? metalc2 A OE1 GLU 96 A GLU 96 1_555 E CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? metalc ? metalc3 A OE2 GLU 96 A GLU 96 1_555 E CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.146 ? metalc ? metalc4 A OE1 GLN 141 A GLN 141 1_555 E CA CA . A CA 403 4_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? metalc ? metalc5 A O GLY 202 A GLY 202 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.781 ? metalc ? metalc6 A O ARG 205 A ARG 205 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.597 ? metalc ? metalc7 A O GLY 207 A GLY 207 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.576 ? metalc ? metalc8 A OG SER 234 A SER 234 1_555 C CA CA . A CA 401 4_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc9 A OE1 GLU 247 A GLU 247 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? metalc ? metalc10 A OE2 GLU 247 A GLU 247 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.888 ? metalc ? metalc11 A O MET 278 A MET 278 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.083 ? metalc ? metalc12 A O GLY 280 A GLY 280 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.726 ? metalc ? metalc13 A O GLY 282 A GLY 282 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? metalc ? metalc14 A OD1 ASP 322 A ASP 322 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? metalc ? metalc15 A OD2 ASP 322 A ASP 322 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.823 ? metalc ? metalc16 B O GLY 50 B GLY 50 1_555 H CA CA . B CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.6 ? metalc ? metalc17 B O VAL 51 B VAL 51 1_555 H CA CA . B CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.657 ? metalc ? metalc18 B OE1 GLU 53 B GLU 53 1_555 H CA CA . B CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.195 ? metalc ? metalc19 B O GLY 202 B GLY 202 1_555 F CA CA . B CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.152 ? metalc ? metalc20 B O ARG 205 B ARG 205 1_555 F CA CA . B CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.586 ? metalc ? metalc21 B O GLY 207 B GLY 207 1_555 F CA CA . B CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.043 ? metalc ? metalc22 B OG SER 234 B SER 234 1_555 G CA CA . B CA 402 3_544 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? metalc ? metalc23 B OE1 GLU 247 B GLU 247 1_555 F CA CA . B CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.914 ? metalc ? metalc24 B OE2 GLU 247 B GLU 247 1_555 F CA CA . B CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.637 ? metalc ? metalc25 B O MET 278 B MET 278 1_555 G CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.632 ? metalc ? metalc26 B O GLY 280 B GLY 280 1_555 G CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? metalc ? metalc27 B O GLY 282 B GLY 282 1_555 G CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc28 B OD1 ASP 322 B ASP 322 1_555 G CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc29 B OD2 ASP 322 B ASP 322 1_555 G CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.538 ? metalc ? metalc30 H CA CA . B CA 403 1_555 J O HOH . B HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5LQ0 _atom_sites.fract_transf_matrix[1][1] 0.017715 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015755 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003719 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA A 1 401 340 CA CA . D 2 CA A 1 402 341 CA CA . E 2 CA A 1 403 342 CA CA . F 2 CA B 1 401 340 CA CA . G 2 CA B 1 402 341 CA CA . H 2 CA B 1 403 342 CA CA . I 3 HOH A 1 501 2 HOH HOH . I 3 HOH A 2 502 3 HOH HOH . I 3 HOH A 3 503 8 HOH HOH . I 3 HOH A 4 504 6 HOH HOH . I 3 HOH A 5 505 1 HOH HOH . J 3 HOH B 1 501 4 HOH HOH . J 3 HOH B 2 502 7 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 2 _atom_site.Cartn_x -11.035 _atom_site.Cartn_y 13.218 _atom_site.Cartn_z -85.81 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 79.98 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 401 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #