data_5LQ4 # _model_server_result.job_id g6eaxv2AXqK0uS_uhJ1LEA _model_server_result.datetime_utc '2024-11-05 04:10:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5lq4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":901}' # _entry.id 5LQ4 # _exptl.entry_id 5LQ4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec 1.5.1.34 # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5LQ4 _cell.length_a 109.3 _cell.length_b 109.3 _cell.length_c 195.36 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LQ4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 5LQ4 _atom_sites.fract_transf_matrix[1][1] 0.009149 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009149 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005119 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 FMN A 1 901 901 FMN FMN . D 3 FMN B 1 901 901 FMN FMN . E 4 HOH A 1 1001 4 HOH HOH . E 4 HOH A 2 1002 3 HOH HOH . F 4 HOH B 1 1001 1 HOH HOH . F 4 HOH B 2 1002 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . D 3 148.864 118.682 42.634 1 47.24 ? N1 FMN 901 B 1 HETATM 2 C C2 FMN . . . D 3 148.289 119.286 41.551 1 52.82 ? C2 FMN 901 B 1 HETATM 3 O O2 FMN . . . D 3 148.879 119.258 40.446 1 54.41 ? O2 FMN 901 B 1 HETATM 4 N N3 FMN . . . D 3 147.105 119.926 41.62 1 47.22 ? N3 FMN 901 B 1 HETATM 5 C C4 FMN . . . D 3 146.412 120.004 42.762 1 41.05 ? C4 FMN 901 B 1 HETATM 6 O O4 FMN . . . D 3 145.317 120.602 42.771 1 45.54 ? O4 FMN 901 B 1 HETATM 7 C C4A FMN . . . D 3 146.966 119.37 43.989 1 38.89 ? C4A FMN 901 B 1 HETATM 8 N N5 FMN . . . D 3 146.329 119.397 45.177 1 43.75 ? N5 FMN 901 B 1 HETATM 9 C C5A FMN . . . D 3 146.848 118.812 46.29 1 43.79 ? C5A FMN 901 B 1 HETATM 10 C C6 FMN . . . D 3 146.135 118.87 47.488 1 43.57 ? C6 FMN 901 B 1 HETATM 11 C C7 FMN . . . D 3 146.633 118.282 48.649 1 42.82 ? C7 FMN 901 B 1 HETATM 12 C C7M FMN . . . D 3 145.845 118.371 49.93 1 44.45 ? C7M FMN 901 B 1 HETATM 13 C C8 FMN . . . D 3 147.939 117.564 48.61 1 40.85 ? C8 FMN 901 B 1 HETATM 14 C C8M FMN . . . D 3 148.519 116.917 49.844 1 40.36 ? C8M FMN 901 B 1 HETATM 15 C C9 FMN . . . D 3 148.652 117.51 47.418 1 42.73 ? C9 FMN 901 B 1 HETATM 16 C C9A FMN . . . D 3 148.164 118.107 46.241 1 41.53 ? C9A FMN 901 B 1 HETATM 17 N N10 FMN . . . D 3 148.848 118.056 44.995 1 42.13 ? N10 FMN 901 B 1 HETATM 18 C C10 FMN . . . D 3 148.274 118.683 43.858 1 42.3 ? C10 FMN 901 B 1 HETATM 19 C C1' FMN . . . D 3 150.153 117.397 44.868 1 47.27 ? C1' FMN 901 B 1 HETATM 20 C C2' FMN . . . D 3 151.199 118.42 45.295 1 46.4 ? C2' FMN 901 B 1 HETATM 21 O O2' FMN . . . D 3 151.241 119.456 44.304 1 52.85 ? O2' FMN 901 B 1 HETATM 22 C C3' FMN . . . D 3 152.558 117.749 45.48 1 46.88 ? C3' FMN 901 B 1 HETATM 23 O O3' FMN . . . D 3 152.516 117.002 46.708 1 39.33 ? O3' FMN 901 B 1 HETATM 24 C C4' FMN . . . D 3 153.745 118.722 45.486 1 43.68 ? C4' FMN 901 B 1 HETATM 25 O O4' FMN . . . D 3 153.538 119.819 44.584 1 50.92 ? O4' FMN 901 B 1 HETATM 26 C C5' FMN . . . D 3 155.01 118.058 44.989 1 45.24 ? C5' FMN 901 B 1 HETATM 27 O O5' FMN . . . D 3 155.316 116.931 45.794 1 49.75 ? O5' FMN 901 B 1 HETATM 28 P P FMN . . . D 3 155.344 115.414 45.237 1 49.73 ? P FMN 901 B 1 HETATM 29 O O1P FMN . . . D 3 156.358 114.78 46.16 1 49.08 ? O1P FMN 901 B 1 HETATM 30 O O2P FMN . . . D 3 153.943 114.904 45.46 1 57.68 ? O2P FMN 901 B 1 HETATM 31 O O3P FMN . . . D 3 155.726 115.464 43.78 1 49.1 ? O3P FMN 901 B 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #