data_5LQC # _model_server_result.job_id 1sduT42Xf2CSq-_Hf-666w _model_server_result.datetime_utc '2024-11-24 04:27:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5lqc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5LQC # _exptl.entry_id 5LQC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 536.512 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(E)-3-[(2R,3S,4R,5R)-3,4-dihydroxy-5-(6-methylaminopurin-9-yl)oxolan-2-yl]prop-2-enyl]-5-(4-fluorophenyl)-2,3-dihydroxy-benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5LQC _cell.length_a 50.758 _cell.length_b 50.758 _cell.length_c 170.215 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LQC _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 141 A ASP 141 1_555 C MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc2 A OD2 ASP 169 A ASP 169 1_555 C MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc3 A OD1 ASN 170 A ASN 170 1_555 C MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc4 B O34 542 . A 542 301 1_555 C MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.868 ? metalc ? metalc5 B O32 542 . A 542 301 1_555 C MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc6 C MG MG . A MG 302 1_555 D O HOH . A HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? # _chem_comp.formula 'C26 H25 F N6 O6' _chem_comp.formula_weight 536.512 _chem_comp.id 542 _chem_comp.mon_nstd_flag . _chem_comp.name N-[(E)-3-[(2R,3S,4R,5R)-3,4-dihydroxy-5-(6-methylaminopurin-9-yl)oxolan-2-yl]prop-2-enyl]-5-(4-fluorophenyl)-2,3-dihydroxy-benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F30 C29 542 sing 1 n n C29 C26 542 doub 2 n y C29 C28 542 sing 3 n y C26 C25 542 sing 4 n y C25 C24 542 doub 5 n y C28 C27 542 doub 6 n y C27 C24 542 sing 7 n y C24 C22 542 sing 8 n y C22 C21 542 doub 9 n y C22 C23 542 sing 10 n y C21 C20 542 sing 11 n y C23 C33 542 doub 12 n y C33 O34 542 sing 13 n n C33 C31 542 sing 14 n y C31 O32 542 sing 15 n n C31 C20 542 doub 16 n y C20 C18 542 sing 17 n n C18 O19 542 doub 18 n n C18 N17 542 sing 19 n n N17 C16 542 sing 20 n n C16 C15 542 sing 21 n n C15 C14 542 doub 22 n n C14 C6 542 sing 23 n n C6 C4 542 sing 24 n n C6 O13 542 sing 25 n n C4 O5 542 sing 26 n n C4 C2 542 sing 27 n n C2 O3 542 sing 28 n n C2 C1 542 sing 29 n n O13 C1 542 sing 30 n n C1 N10 542 sing 31 n n N10 C9 542 sing 32 n y N10 C11 542 sing 33 e y C9 N8 542 doub 34 n y C11 N40 542 doub 35 n y C11 C12 542 sing 36 n y N40 C39 542 sing 37 n y C39 N38 542 doub 38 n y N38 C35 542 sing 39 n y C35 C12 542 doub 40 n y C35 N7 542 sing 41 n n C12 N8 542 sing 42 n y N7 C36 542 sing 43 n n C26 H26 542 sing 44 n n C25 H25 542 sing 45 n n C28 H28 542 sing 46 n n C27 H27 542 sing 47 n n C21 H21 542 sing 48 n n C23 H23 542 sing 49 n n O34 HO34 542 sing 50 n n O32 HO32 542 sing 51 n n N17 HN17 542 sing 52 n n C16 H16 542 sing 53 n n C16 H16A 542 sing 54 n n C15 H15 542 sing 55 n n C14 H14 542 sing 56 n n C6 H6 542 sing 57 n n C4 H4 542 sing 58 n n O5 HO5 542 sing 59 n n C2 H2 542 sing 60 n n O3 HO3 542 sing 61 n n C1 H1 542 sing 62 n n C9 H9 542 sing 63 n n C39 H39 542 sing 64 n n N7 HN7 542 sing 65 n n C36 H36 542 sing 66 n n C36 H36A 542 sing 67 n n C36 H36B 542 sing 68 n n # _atom_sites.entry_id 5LQC _atom_sites.fract_transf_matrix[1][1] 0.019701 _atom_sites.fract_transf_matrix[1][2] 0.011375 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022749 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005875 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 542 A 1 301 250 542 543 . C 3 MG A 1 302 251 MG MG . D 4 HOH A 1 401 2 HOH HOH . D 4 HOH A 2 402 1 HOH HOH . D 4 HOH A 3 403 22 HOH HOH . D 4 HOH A 4 404 23 HOH HOH . D 4 HOH A 5 405 27 HOH HOH . D 4 HOH A 6 406 7 HOH HOH . D 4 HOH A 7 407 19 HOH HOH . D 4 HOH A 8 408 17 HOH HOH . D 4 HOH A 9 409 56 HOH HOH . D 4 HOH A 10 410 18 HOH HOH . D 4 HOH A 11 411 21 HOH HOH . D 4 HOH A 12 412 54 HOH HOH . D 4 HOH A 13 413 48 HOH HOH . D 4 HOH A 14 414 12 HOH HOH . D 4 HOH A 15 415 32 HOH HOH . D 4 HOH A 16 416 4 HOH HOH . D 4 HOH A 17 417 33 HOH HOH . D 4 HOH A 18 418 51 HOH HOH . D 4 HOH A 19 419 3 HOH HOH . D 4 HOH A 20 420 10 HOH HOH . D 4 HOH A 21 421 29 HOH HOH . D 4 HOH A 22 422 9 HOH HOH . D 4 HOH A 23 423 36 HOH HOH . D 4 HOH A 24 424 41 HOH HOH . D 4 HOH A 25 425 25 HOH HOH . D 4 HOH A 26 426 47 HOH HOH . D 4 HOH A 27 427 28 HOH HOH . D 4 HOH A 28 428 15 HOH HOH . D 4 HOH A 29 429 46 HOH HOH . D 4 HOH A 30 430 37 HOH HOH . D 4 HOH A 31 431 16 HOH HOH . D 4 HOH A 32 432 5 HOH HOH . D 4 HOH A 33 433 24 HOH HOH . D 4 HOH A 34 434 40 HOH HOH . D 4 HOH A 35 435 20 HOH HOH . D 4 HOH A 36 436 11 HOH HOH . D 4 HOH A 37 437 6 HOH HOH . D 4 HOH A 38 438 50 HOH HOH . D 4 HOH A 39 439 30 HOH HOH . D 4 HOH A 40 440 43 HOH HOH . D 4 HOH A 41 441 44 HOH HOH . D 4 HOH A 42 442 42 HOH HOH . D 4 HOH A 43 443 8 HOH HOH . D 4 HOH A 44 444 34 HOH HOH . D 4 HOH A 45 445 13 HOH HOH . D 4 HOH A 46 446 26 HOH HOH . D 4 HOH A 47 447 39 HOH HOH . D 4 HOH A 48 448 49 HOH HOH . D 4 HOH A 49 449 14 HOH HOH . D 4 HOH A 50 450 38 HOH HOH . D 4 HOH A 51 451 57 HOH HOH . D 4 HOH A 52 452 55 HOH HOH . D 4 HOH A 53 453 35 HOH HOH . D 4 HOH A 54 454 45 HOH HOH . D 4 HOH A 55 455 53 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 F F30 542 . . . B 2 21.385 31.562 2.124 1 71.28 ? F30 542 301 A 1 HETATM 2 C C29 542 . . . B 2 22.336 30.92 2.896 1 67.2 ? C29 542 301 A 1 HETATM 3 C C26 542 . . . B 2 23.468 31.604 3.286 1 60.98 ? C26 542 301 A 1 HETATM 4 C C25 542 . . . B 2 24.41 30.926 4.069 1 59.58 ? C25 542 301 A 1 HETATM 5 C C28 542 . . . B 2 22.107 29.597 3.255 1 67.33 ? C28 542 301 A 1 HETATM 6 C C27 542 . . . B 2 23.06 28.934 4.041 1 66.27 ? C27 542 301 A 1 HETATM 7 C C24 542 . . . B 2 24.215 29.592 4.451 1 58.81 ? C24 542 301 A 1 HETATM 8 C C22 542 . . . B 2 25.223 28.903 5.271 1 45.8 ? C22 542 301 A 1 HETATM 9 C C21 542 . . . B 2 26.225 29.706 5.838 1 38.17 ? C21 542 301 A 1 HETATM 10 C C23 542 . . . B 2 25.204 27.492 5.472 1 38.99 ? C23 542 301 A 1 HETATM 11 C C33 542 . . . B 2 26.211 26.933 6.27 1 35.06 ? C33 542 301 A 1 HETATM 12 O O34 542 . . . B 2 26.292 25.569 6.534 1 35.52 ? O34 542 301 A 1 HETATM 13 C C31 542 . . . B 2 27.2 27.716 6.818 1 32.49 ? C31 542 301 A 1 HETATM 14 O O32 542 . . . B 2 28.15 27.057 7.573 1 38.15 ? O32 542 301 A 1 HETATM 15 C C20 542 . . . B 2 27.22 29.122 6.619 1 37.44 ? C20 542 301 A 1 HETATM 16 C C18 542 . . . B 2 28.214 30.018 7.163 1 36.12 ? C18 542 301 A 1 HETATM 17 O O19 542 . . . B 2 28.431 31.129 6.661 1 41.71 ? O19 542 301 A 1 HETATM 18 N N17 542 . . . B 2 29.038 29.553 8.161 1 33.87 ? N17 542 301 A 1 HETATM 19 C C16 542 . . . B 2 30.047 30.381 8.834 1 39.25 ? C16 542 301 A 1 HETATM 20 C C15 542 . . . B 2 30.294 29.775 10.186 1 41.43 ? C15 542 301 A 1 HETATM 21 C C14 542 . . . B 2 30.795 30.527 11.186 1 44.38 ? C14 542 301 A 1 HETATM 22 C C6 542 . . . B 2 31.057 29.977 12.563 1 41.08 ? C6 542 301 A 1 HETATM 23 C C4 542 . . . B 2 30.636 31.004 13.63 1 42.32 ? C4 542 301 A 1 HETATM 24 O O5 542 . . . B 2 30.282 30.219 14.791 1 37.95 ? O5 542 301 A 1 HETATM 25 C C2 542 . . . B 2 31.947 31.777 13.836 1 43.35 ? C2 542 301 A 1 HETATM 26 O O3 542 . . . B 2 32.013 32.439 15.113 1 40.33 ? O3 542 301 A 1 HETATM 27 O O13 542 . . . B 2 32.468 29.757 12.795 1 41.24 ? O13 542 301 A 1 HETATM 28 C C1 542 . . . B 2 33.002 30.683 13.775 1 39.79 ? C1 542 301 A 1 HETATM 29 N N10 542 . . . B 2 34.258 31.048 13.09 1 36.52 ? N10 542 301 A 1 HETATM 30 C C9 542 . . . B 2 34.378 31.677 11.813 1 34.78 ? C9 542 301 A 1 HETATM 31 C C11 542 . . . B 2 35.584 30.845 13.483 1 33.03 ? C11 542 301 A 1 HETATM 32 N N40 542 . . . B 2 35.993 30.274 14.607 1 32.42 ? N40 542 301 A 1 HETATM 33 C C39 542 . . . B 2 37.299 30.203 14.72 1 35.24 ? C39 542 301 A 1 HETATM 34 N N38 542 . . . B 2 38.195 30.652 13.803 1 38.76 ? N38 542 301 A 1 HETATM 35 C C35 542 . . . B 2 37.783 31.206 12.695 1 36.91 ? C35 542 301 A 1 HETATM 36 C C12 542 . . . B 2 36.396 31.331 12.484 1 35.71 ? C12 542 301 A 1 HETATM 37 N N8 542 . . . B 2 35.63 31.853 11.465 1 33.31 ? N8 542 301 A 1 HETATM 38 N N7 542 . . . B 2 38.718 31.676 11.771 1 40.78 ? N7 542 301 A 1 HETATM 39 C C36 542 . . . B 2 38.381 32.443 10.538 1 39.89 ? C36 542 301 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 39 #