data_5LQQ # _model_server_result.job_id '_e7QaZKM5LYhmwjOKo4ODw' _model_server_result.datetime_utc '2024-11-16 11:42:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5lqq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":915}' # _entry.id 5LQQ # _exptl.entry_id 5LQQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 126.904 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IODIDE ION' _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.88 _cell.angle_gamma 90 _cell.entry_id 5LQQ _cell.length_a 62.655 _cell.length_b 89.067 _cell.length_c 77.509 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LQQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N ? 5 H N N ? 5 I N N ? 5 J N N ? 5 K N N ? 5 L N N ? 5 M N N ? 5 N N N ? 5 O N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 3 MAN BMA C1 O1 . O6 HO6 . sing 4 ? 2 5 4 MAN MAN C1 O1 . O3 HO3 . sing 5 ? 2 6 5 MAN MAN C1 O1 . O2 HO2 . sing 6 ? 2 7 4 MAN MAN C1 O1 . O6 HO6 . sing 7 ? 2 8 3 MAN BMA C1 O1 . O3 HO3 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 860 NAG 2 n B NAG 2 B 2 NAG A 861 NAG 2 n B BMA 3 B 3 BMA A 862 BMA 2 n B MAN 4 B 4 MAN A 863 MAN 2 n B MAN 5 B 5 MAN A 865 MAN 2 n B MAN 6 B 6 MAN A 866 MAN 2 n B MAN 7 B 7 MAN A 864 MAN 2 n B MAN 8 B 8 MAN A 867 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 A CYS 58 1_555 A SG CYS 40 A CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 27 A CYS 62 1_555 A SG CYS 58 A CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 A SG CYS 38 A CYS 73 1_555 A SG CYS 51 A CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 A SG CYS 44 A CYS 79 1_555 A SG CYS 50 A CYS 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf5 A SG CYS 67 A CYS 102 1_555 A SG CYS 84 A CYS 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 A SG CYS 72 A CYS 107 1_555 A SG CYS 102 A CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 A SG CYS 82 A CYS 117 1_555 A SG CYS 95 A CYS 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf8 A SG CYS 88 A CYS 123 1_555 A SG CYS 94 A CYS 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf9 A SG CYS 113 A CYS 148 1_555 A SG CYS 159 A CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf10 A SG CYS 121 A CYS 156 1_555 A SG CYS 315 A CYS 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf11 A SG CYS 378 A CYS 413 1_555 A SG CYS 770 A CYS 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf12 A SG CYS 531 A CYS 566 1_555 A SG CYS 631 A CYS 666 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf13 A SG CYS 533 A CYS 568 1_555 A SG CYS 616 A CYS 651 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf14 A SG CYS 739 A CYS 774 1_555 A SG CYS 749 A CYS 784 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? covale ? covale1 A ND2 ASN 489 A ASN 524 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? covale ? covale2 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale3 B O4 NAG . B NAG 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale4 B O6 BMA . B BMA 3 1_555 B C1 MAN . B MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? covale ? covale5 B O3 BMA . B BMA 3 1_555 B C1 MAN . B MAN 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale6 B O3 MAN . B MAN 4 1_555 B C1 MAN . B MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale7 B O6 MAN . B MAN 4 1_555 B C1 MAN . B MAN 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale8 B O2 MAN . B MAN 5 1_555 B C1 MAN . B MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? metalc ? metalc1 A OD1 ASP 136 A ASP 171 1_555 D ZN ZN . A ZN 910 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.878 ? metalc ? metalc2 A OG1 THR 174 A THR 209 1_555 D ZN ZN . A ZN 910 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc3 A OD1 ASP 276 A ASP 311 1_555 C ZN ZN . A ZN 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.677 ? metalc ? metalc4 A OD2 ASP 276 A ASP 311 1_555 C ZN ZN . A ZN 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc5 A NE2 HIS 280 A HIS 315 1_555 C ZN ZN . A ZN 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc6 A OD2 ASP 323 A ASP 358 1_555 D ZN ZN . A ZN 910 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.591 ? metalc ? metalc7 A NE2 HIS 324 A HIS 359 1_555 D ZN ZN . A ZN 910 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc8 A NE2 HIS 439 A HIS 474 1_555 C ZN ZN . A ZN 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc9 A O TYR 634 A TYR 669 1_555 Q NA NA . A NA 923 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.791 ? metalc ? metalc10 A O ASP 637 A ASP 672 1_555 Q NA NA . A NA 923 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.863 ? metalc ? metalc11 A O MET 640 A MET 675 1_555 Q NA NA . A NA 923 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.829 ? metalc ? metalc12 A OD1 ASP 704 A ASP 739 1_555 E CA CA . A CA 911 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc13 A OD1 ASN 706 A ASN 741 1_555 E CA CA . A CA 911 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc14 A OD1 ASP 708 A ASP 743 1_555 E CA CA . A CA 911 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? metalc ? metalc15 A O LEU 710 A LEU 745 1_555 E CA CA . A CA 911 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc16 A OD1 ASP 712 A ASP 747 1_555 E CA CA . A CA 911 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc17 E CA CA . A CA 911 1_555 R O HOH . A HOH 1037 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc18 Q NA NA . A NA 923 1_555 R O HOH . A HOH 1042 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc19 Q NA NA . A NA 923 1_555 R O HOH . A HOH 1074 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? # _chem_comp.formula 'I -1' _chem_comp.formula_weight 126.904 _chem_comp.id IOD _chem_comp.mon_nstd_flag . _chem_comp.name 'IODIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5LQQ _atom_sites.fract_transf_matrix[1][1] 0.01596 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00365 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011228 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013235 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 909 901 ZN ZN . D 3 ZN A 1 910 902 ZN ZN . E 4 CA A 1 911 903 CA CA . F 5 IOD A 1 912 1 IOD IOD . G 5 IOD A 1 913 2 IOD IOD . H 5 IOD A 1 914 3 IOD IOD . I 5 IOD A 1 915 4 IOD IOD . J 5 IOD A 1 916 5 IOD IOD . K 5 IOD A 1 917 6 IOD IOD . L 5 IOD A 1 918 7 IOD IOD . M 5 IOD A 1 919 8 IOD IOD . N 5 IOD A 1 920 9 IOD IOD . O 5 IOD A 1 921 10 IOD IOD . P 6 72P A 1 922 905 72P UNL . Q 7 NA A 1 923 1 NA NA . R 8 HOH A 1 1001 9 HOH HOH . R 8 HOH A 2 1002 55 HOH HOH . R 8 HOH A 3 1003 2 HOH HOH . R 8 HOH A 4 1004 54 HOH HOH . R 8 HOH A 5 1005 78 HOH HOH . R 8 HOH A 6 1006 76 HOH HOH . R 8 HOH A 7 1007 75 HOH HOH . R 8 HOH A 8 1008 60 HOH HOH . R 8 HOH A 9 1009 18 HOH HOH . R 8 HOH A 10 1010 33 HOH HOH . R 8 HOH A 11 1011 66 HOH HOH . R 8 HOH A 12 1012 31 HOH HOH . R 8 HOH A 13 1013 22 HOH HOH . R 8 HOH A 14 1014 30 HOH HOH . R 8 HOH A 15 1015 24 HOH HOH . R 8 HOH A 16 1016 104 HOH HOH . R 8 HOH A 17 1017 100 HOH HOH . R 8 HOH A 18 1018 48 HOH HOH . R 8 HOH A 19 1019 73 HOH HOH . R 8 HOH A 20 1020 46 HOH HOH . R 8 HOH A 21 1021 61 HOH HOH . R 8 HOH A 22 1022 88 HOH HOH . R 8 HOH A 23 1023 91 HOH HOH . R 8 HOH A 24 1024 57 HOH HOH . R 8 HOH A 25 1025 36 HOH HOH . R 8 HOH A 26 1026 37 HOH HOH . R 8 HOH A 27 1027 56 HOH HOH . R 8 HOH A 28 1028 49 HOH HOH . R 8 HOH A 29 1029 45 HOH HOH . R 8 HOH A 30 1030 84 HOH HOH . R 8 HOH A 31 1031 103 HOH HOH . R 8 HOH A 32 1032 34 HOH HOH . R 8 HOH A 33 1033 80 HOH HOH . R 8 HOH A 34 1034 82 HOH HOH . R 8 HOH A 35 1035 63 HOH HOH . R 8 HOH A 36 1036 7 HOH HOH . R 8 HOH A 37 1037 17 HOH HOH . R 8 HOH A 38 1038 50 HOH HOH . R 8 HOH A 39 1039 87 HOH HOH . R 8 HOH A 40 1040 94 HOH HOH . R 8 HOH A 41 1041 58 HOH HOH . R 8 HOH A 42 1042 77 HOH HOH . R 8 HOH A 43 1043 98 HOH HOH . R 8 HOH A 44 1044 38 HOH HOH . R 8 HOH A 45 1045 70 HOH HOH . R 8 HOH A 46 1046 101 HOH HOH . R 8 HOH A 47 1047 43 HOH HOH . R 8 HOH A 48 1048 93 HOH HOH . R 8 HOH A 49 1049 89 HOH HOH . R 8 HOH A 50 1050 105 HOH HOH . R 8 HOH A 51 1051 102 HOH HOH . R 8 HOH A 52 1052 71 HOH HOH . R 8 HOH A 53 1053 28 HOH HOH . R 8 HOH A 54 1054 90 HOH HOH . R 8 HOH A 55 1055 25 HOH HOH . R 8 HOH A 56 1056 39 HOH HOH . R 8 HOH A 57 1057 85 HOH HOH . R 8 HOH A 58 1058 67 HOH HOH . R 8 HOH A 59 1059 81 HOH HOH . R 8 HOH A 60 1060 95 HOH HOH . R 8 HOH A 61 1061 42 HOH HOH . R 8 HOH A 62 1062 59 HOH HOH . R 8 HOH A 63 1063 64 HOH HOH . R 8 HOH A 64 1064 92 HOH HOH . R 8 HOH A 65 1065 52 HOH HOH . R 8 HOH A 66 1066 96 HOH HOH . R 8 HOH A 67 1067 99 HOH HOH . R 8 HOH A 68 1068 83 HOH HOH . R 8 HOH A 69 1069 74 HOH HOH . R 8 HOH A 70 1070 106 HOH HOH . R 8 HOH A 71 1071 97 HOH HOH . R 8 HOH A 72 1072 21 HOH HOH . R 8 HOH A 73 1073 86 HOH HOH . R 8 HOH A 74 1074 27 HOH HOH . R 8 HOH A 75 1075 62 HOH HOH . R 8 HOH A 76 1076 68 HOH HOH . R 8 HOH A 77 1077 107 HOH HOH . R 8 HOH A 78 1078 65 HOH HOH . R 8 HOH A 79 1079 79 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol I _atom_site.label_atom_id I _atom_site.label_comp_id IOD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id I _atom_site.label_entity_id 5 _atom_site.Cartn_x -21.609 _atom_site.Cartn_y -23.998 _atom_site.Cartn_z -60.105 _atom_site.occupancy 0.75 _atom_site.B_iso_or_equiv 112.98 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id I _atom_site.auth_comp_id IOD _atom_site.auth_seq_id 915 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #