data_5LQV
#
_model_server_result.job_id            KuehhvkLynk3MAgXymm9eg 
_model_server_result.datetime_utc      '2024-11-16 20:26:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5lqv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":101}' 
#
_entry.id    5LQV 
#
_exptl.entry_id    5LQV 
_exptl.method      'SOLUTION NMR' 
#
_entity.details                     ? 
_entity.formula_weight              483.553 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-MYRISTOYL-2-HYDROXY-SN-GLYCERO-3-[PHOSPHO-RAC-(1-GLYCEROL)] 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 4 A CYS 4 1_555 A SG CYS 51 A CYS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? 
disulf ? disulf2 A SG CYS 14 A CYS 14 1_555 A SG CYS 28 A CYS 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? 
disulf ? disulf3 A SG CYS 29 A CYS 29 1_555 A SG CYS 74 A CYS 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? 
disulf ? disulf4 A SG CYS 49 A CYS 49 1_555 A SG CYS 88 A CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? 
#
_chem_comp.formula           'C22 H44 O9 P -1' 
_chem_comp.formula_weight    483.553 
_chem_comp.id                PGM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-MYRISTOYL-2-HYDROXY-SN-GLYCERO-3-[PHOSPHO-RAC-(1-GLYCEROL)] 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     LYSOPHOSPHATIDYLGLYCEROL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 PGM sing 177 n n 
C1 C2 PGM sing 178 n n 
C1 HC11 PGM sing 179 n n 
C1 HC12 PGM sing 180 n n 
O1 HO1 PGM sing 181 n n 
C2 O2 PGM sing 182 n n 
C2 C3 PGM sing 183 n n 
C2 HC2 PGM sing 184 n n 
O2 HO2 PGM sing 185 n n 
C3 O4 PGM sing 186 n n 
C3 HC31 PGM sing 187 n n 
C3 HC32 PGM sing 188 n n 
O4 P5 PGM sing 189 n n 
P5 O5A PGM doub 190 n n 
P5 O5B PGM sing 191 n n 
P5 O6 PGM sing 192 n n 
O6 C7 PGM sing 193 n n 
C7 C8 PGM sing 194 n n 
C7 HC71 PGM sing 195 n n 
C7 HC72 PGM sing 196 n n 
C8 O8 PGM sing 197 n n 
C8 C9 PGM sing 198 n n 
C8 HC8 PGM sing 199 n n 
O8 HO8 PGM sing 200 n n 
C9 OQ2 PGM sing 201 n n 
C9 HC91 PGM sing 202 n n 
C9 HC92 PGM sing 203 n n 
OQ1 CA PGM doub 204 n n 
OQ2 CA PGM sing 205 n n 
CA CB PGM sing 206 n n 
CB CC PGM sing 207 n n 
CB HCB1 PGM sing 208 n n 
CB HCB2 PGM sing 209 n n 
CC CD PGM sing 210 n n 
CC HCC1 PGM sing 211 n n 
CC HCC2 PGM sing 212 n n 
CD CE PGM sing 213 n n 
CD HCD1 PGM sing 214 n n 
CD HCD2 PGM sing 215 n n 
CE CF PGM sing 216 n n 
CE HCE1 PGM sing 217 n n 
CE HCE2 PGM sing 218 n n 
CF CG PGM sing 219 n n 
CF HCF1 PGM sing 220 n n 
CF HCF2 PGM sing 221 n n 
CG CH PGM sing 222 n n 
CG HCG1 PGM sing 223 n n 
CG HCG2 PGM sing 224 n n 
CH CI PGM sing 225 n n 
CH HCH1 PGM sing 226 n n 
CH HCH2 PGM sing 227 n n 
CI CJ PGM sing 228 n n 
CI HCI1 PGM sing 229 n n 
CI HCI2 PGM sing 230 n n 
CJ CK PGM sing 231 n n 
CJ HCJ1 PGM sing 232 n n 
CJ HCJ2 PGM sing 233 n n 
CK CL PGM sing 234 n n 
CK HCK1 PGM sing 235 n n 
CK HCK2 PGM sing 236 n n 
CL CM PGM sing 237 n n 
CL HCL1 PGM sing 238 n n 
CL HCL2 PGM sing 239 n n 
CM CN PGM sing 240 n n 
CM HCM1 PGM sing 241 n n 
CM HCM2 PGM sing 242 n n 
CN CO PGM sing 243 n n 
CN HCN1 PGM sing 244 n n 
CN HCN2 PGM sing 245 n n 
CO CP PGM sing 246 n n 
CO HCO1 PGM sing 247 n n 
CO HCO2 PGM sing 248 n n 
CP HCP1 PGM sing 249 n n 
CP HCP2 PGM sing 250 n n 
CP HCP3 PGM sing 251 n n 
#
_atom_sites.entry_id                     5LQV 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          B 
_pdbx_nonpoly_scheme.entity_id        2 
_pdbx_nonpoly_scheme.mon_id           PGM 
_pdbx_nonpoly_scheme.pdb_strand_id    A 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      101 
_pdbx_nonpoly_scheme.auth_seq_num     103 
_pdbx_nonpoly_scheme.pdb_mon_id       PGM 
_pdbx_nonpoly_scheme.auth_mon_id      PPG 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PGM . . . B 2 9.663 -1.663 -21.134 1 20.22 ? C1 PGM 101 A 1 
HETATM 2 O O1 PGM . . . B 2 10.625 -1.79 -22.185 1 13.25 ? O1 PGM 101 A 1 
HETATM 3 C C2 PGM . . . B 2 10.246 -0.91 -19.927 1 73.14 ? C2 PGM 101 A 1 
HETATM 4 O O2 PGM . . . B 2 10.168 0.486 -20.204 1 61.33 ? O2 PGM 101 A 1 
HETATM 5 C C3 PGM . . . B 2 9.289 -1.174 -18.765 1 70.13 ? C3 PGM 101 A 1 
HETATM 6 O O4 PGM . . . B 2 9.435 -2.485 -18.202 1 20.03 ? O4 PGM 101 A 1 
HETATM 7 P P5 PGM . . . B 2 8.386 -2.772 -17.007 1 71.25 ? P5 PGM 101 A 1 
HETATM 8 O O5A PGM . . . B 2 7.729 -1.646 -16.314 1 24.21 ? O5A PGM 101 A 1 
HETATM 9 O O5B PGM . . . B 2 8.954 -3.794 -16.111 1 52.32 ? O5B PGM 101 A 1 
HETATM 10 O O6 PGM . . . B 2 7.129 -3.443 -17.763 1 64.5 ? O6 PGM 101 A 1 
HETATM 11 C C7 PGM . . . B 2 7.494 -4.576 -18.54 1 34.43 ? C7 PGM 101 A 1 
HETATM 12 C C8 PGM . . . B 2 6.448 -5.111 -19.518 1 54.43 ? C8 PGM 101 A 1 
HETATM 13 O O8 PGM . . . B 2 6.12 -4.204 -20.582 1 51.32 ? O8 PGM 101 A 1 
HETATM 14 C C9 PGM . . . B 2 5.186 -5.431 -18.721 1 14.13 ? C9 PGM 101 A 1 
HETATM 15 O OQ1 PGM . . . B 2 3.024 -3.889 -18.414 1 52.32 ? OQ1 PGM 101 A 1 
HETATM 16 O OQ2 PGM . . . B 2 4.064 -5.494 -19.618 1 43.31 ? OQ2 PGM 101 A 1 
HETATM 17 C CA PGM . . . B 2 2.984 -4.706 -19.318 1 30.44 ? CA PGM 101 A 1 
HETATM 18 C CB PGM . . . B 2 1.708 -4.795 -20.157 1 44.12 ? CB PGM 101 A 1 
HETATM 19 C CC PGM . . . B 2 0.903 -3.483 -20.134 1 74.52 ? CC PGM 101 A 1 
HETATM 20 C CD PGM . . . B 2 -0.177 -3.689 -19.069 1 65.45 ? CD PGM 101 A 1 
HETATM 21 C CE PGM . . . B 2 -1.107 -2.473 -18.942 1 73.12 ? CE PGM 101 A 1 
HETATM 22 C CF PGM . . . B 2 -2.278 -2.473 -19.92 1 60.22 ? CF PGM 101 A 1 
HETATM 23 C CG PGM . . . B 2 -3.554 -1.743 -19.484 1 55.44 ? CG PGM 101 A 1 
HETATM 24 C CH PGM . . . B 2 -4.397 -2.536 -18.488 1 4.33 ? CH PGM 101 A 1 
HETATM 25 C CI PGM . . . B 2 -5.136 -1.477 -17.657 1 2.32 ? CI PGM 101 A 1 
HETATM 26 C CJ PGM . . . B 2 -6.405 -2.055 -17.034 1 10.31 ? CJ PGM 101 A 1 
HETATM 27 C CK PGM . . . B 2 -6.118 -3.21 -16.076 1 34.42 ? CK PGM 101 A 1 
HETATM 28 C CL PGM . . . B 2 -6.216 -2.707 -14.634 1 21.5 ? CL PGM 101 A 1 
HETATM 29 C CM PGM . . . B 2 -5.414 -3.733 -13.829 1 23.23 ? CM PGM 101 A 1 
HETATM 30 C CN PGM . . . B 2 -6.135 -3.805 -12.49 1 1.1 ? CN PGM 101 A 1 
HETATM 31 C CO PGM . . . B 2 -5.073 -4.172 -11.442 1 53.5 ? CO PGM 101 A 1 
HETATM 32 C CP PGM . . . B 2 -4.245 -5.441 -11.642 1 71.33 ? CP PGM 101 A 1 
HETATM 33 H HC11 PGM . . . B 2 9.385 -2.59 -20.865 1 14.12 ? HC11 PGM 101 A 1 
HETATM 34 H HC12 PGM . . . B 2 8.877 -1.168 -21.503 1 24.45 ? HC12 PGM 101 A 1 
HETATM 35 H HO1 PGM . . . B 2 11.334 -2.444 -21.944 1 65.12 ? HO1 PGM 101 A 1 
HETATM 36 H HC2 PGM . . . B 2 11.2 -1.131 -19.737 1 3.34 ? HC2 PGM 101 A 1 
HETATM 37 H HO2 PGM . . . B 2 10.318 0.647 -21.177 1 12.22 ? HO2 PGM 101 A 1 
HETATM 38 H HC31 PGM . . . B 2 8.338 -1.093 -19.077 1 40.45 ? HC31 PGM 101 A 1 
HETATM 39 H HC32 PGM . . . B 2 9.459 -0.512 -18.03 1 70.4 ? HC32 PGM 101 A 1 
HETATM 40 H HC71 PGM . . . B 2 7.729 -5.287 -17.883 1 32.52 ? HC71 PGM 101 A 1 
HETATM 41 H HC72 PGM . . . B 2 8.31 -4.306 -19.041 1 62.11 ? HC72 PGM 101 A 1 
HETATM 42 H HC8 PGM . . . B 2 6.83 -5.894 -20.01 1 42.13 ? HC8 PGM 101 A 1 
HETATM 43 H HO8 PGM . . . B 2 5.129 -4.208 -20.727 1 73.32 ? HO8 PGM 101 A 1 
HETATM 44 H HC91 PGM . . . B 2 5.003 -4.724 -18.046 1 54.33 ? HC91 PGM 101 A 1 
HETATM 45 H HC92 PGM . . . B 2 5.274 -6.315 -18.26 1 12.2 ? HC92 PGM 101 A 1 
HETATM 46 H HCB1 PGM . . . B 2 1.139 -5.53 -19.797 1 50.41 ? HCB1 PGM 101 A 1 
HETATM 47 H HCB2 PGM . . . B 2 1.961 -5.005 -21.104 1 63.24 ? HCB2 PGM 101 A 1 
HETATM 48 H HCC1 PGM . . . B 2 0.484 -3.309 -21.026 1 43.32 ? HCC1 PGM 101 A 1 
HETATM 49 H HCC2 PGM . . . B 2 1.49 -2.717 -19.887 1 20.22 ? HCC2 PGM 101 A 1 
HETATM 50 H HCD1 PGM . . . B 2 0.263 -3.848 -18.188 1 44.12 ? HCD1 PGM 101 A 1 
HETATM 51 H HCD2 PGM . . . B 2 -0.719 -4.485 -19.317 1 41.1 ? HCD2 PGM 101 A 1 
HETATM 52 H HCE1 PGM . . . B 2 -0.571 -1.649 -19.099 1 72.33 ? HCE1 PGM 101 A 1 
HETATM 53 H HCE2 PGM . . . B 2 -1.474 -2.456 -18.012 1 21.13 ? HCE2 PGM 101 A 1 
HETATM 54 H HCF1 PGM . . . B 2 -2.515 -3.431 -20.099 1 34.33 ? HCF1 PGM 101 A 1 
HETATM 55 H HCF2 PGM . . . B 2 -1.959 -2.051 -20.763 1 63.51 ? HCF2 PGM 101 A 1 
HETATM 56 H HCG1 PGM . . . B 2 -4.11 -1.561 -20.294 1 12.52 ? HCG1 PGM 101 A 1 
HETATM 57 H HCG2 PGM . . . B 2 -3.294 -0.881 -19.061 1 61.25 ? HCG2 PGM 101 A 1 
HETATM 58 H HCH1 PGM . . . B 2 -3.815 -3.101 -17.903 1 25.33 ? HCH1 PGM 101 A 1 
HETATM 59 H HCH2 PGM . . . B 2 -5.053 -3.122 -18.969 1 40.53 ? HCH2 PGM 101 A 1 
HETATM 60 H HCI1 PGM . . . B 2 -5.386 -0.71 -18.251 1 54.24 ? HCI1 PGM 101 A 1 
HETATM 61 H HCI2 PGM . . . B 2 -4.533 -1.155 -16.927 1 40.22 ? HCI2 PGM 101 A 1 
HETATM 62 H HCJ1 PGM . . . B 2 -6.996 -2.387 -17.77 1 51.3 ? HCJ1 PGM 101 A 1 
HETATM 63 H HCJ2 PGM . . . B 2 -6.873 -1.329 -16.527 1 21.55 ? HCJ2 PGM 101 A 1 
HETATM 64 H HCK1 PGM . . . B 2 -5.199 -3.568 -16.248 1 72.03 ? HCK1 PGM 101 A 1 
HETATM 65 H HCK2 PGM . . . B 2 -6.788 -3.944 -16.219 1 44.33 ? HCK2 PGM 101 A 1 
HETATM 66 H HCL1 PGM . . . B 2 -7.169 -2.68 -14.329 1 41.55 ? HCL1 PGM 101 A 1 
HETATM 67 H HCL2 PGM . . . B 2 -5.815 -1.789 -14.548 1 65.11 ? HCL2 PGM 101 A 1 
HETATM 68 H HCM1 PGM . . . B 2 -4.469 -3.43 -13.703 1 74.2 ? HCM1 PGM 101 A 1 
HETATM 69 H HCM2 PGM . . . B 2 -5.417 -4.626 -14.277 1 44.24 ? HCM2 PGM 101 A 1 
HETATM 70 H HCN1 PGM . . . B 2 -6.847 -4.501 -12.524 1 53.15 ? HCN1 PGM 101 A 1 
HETATM 71 H HCN2 PGM . . . B 2 -6.551 -2.92 -12.27 1 51.15 ? HCN2 PGM 101 A 1 
HETATM 72 H HCO1 PGM . . . B 2 -5.546 -4.269 -10.567 1 34.23 ? HCO1 PGM 101 A 1 
HETATM 73 H HCO2 PGM . . . B 2 -4.424 -3.411 -11.396 1 21.22 ? HCO2 PGM 101 A 1 
HETATM 74 H HCP1 PGM . . . B 2 -3.597 -5.545 -10.88 1 51.21 ? HCP1 PGM 101 A 1 
HETATM 75 H HCP2 PGM . . . B 2 -4.85 -6.233 -11.67 1 43.43 ? HCP2 PGM 101 A 1 
HETATM 76 H HCP3 PGM . . . B 2 -3.739 -5.381 -12.503 1 33.24 ? HCP3 PGM 101 A 1 
#
_model_server_stats.io_time_ms              25 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    32 
_model_server_stats.query_time_ms           7433 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           76 
#