data_5LQY # _model_server_result.job_id ga1wOzV3xFfuyq38MNqArg _model_server_result.datetime_utc '2025-02-27 12:44:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5lqy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"EA","auth_seq_id":600}' # _entry.id 5LQY # _exptl.entry_id 5LQY _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 18 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 30-meric _pdbx_struct_assembly.oligomeric_count 30 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 18 _struct_asym.id EA _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 EA O2B ATP . A ATP 600 1_555 FA MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc2 GA O3B ADP . B ADP 600 1_555 HA MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? metalc ? metalc3 IA O3B ADP . C ADP 600 1_555 JA MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? metalc ? metalc4 KA O3B ADP . D ADP 600 1_555 LA MG MG . D MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? metalc ? metalc5 NA O3B ADP . F ADP 600 1_555 OA MG MG . F MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.648 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 114 n n PG O2G ATP sing 115 n n PG O3G ATP sing 116 n n PG O3B ATP sing 117 n n O2G HOG2 ATP sing 118 n n O3G HOG3 ATP sing 119 n n PB O1B ATP doub 120 n n PB O2B ATP sing 121 n n PB O3B ATP sing 122 n n PB O3A ATP sing 123 n n O2B HOB2 ATP sing 124 n n PA O1A ATP doub 125 n n PA O2A ATP sing 126 n n PA O3A ATP sing 127 n n PA O5' ATP sing 128 n n O2A HOA2 ATP sing 129 n n O5' C5' ATP sing 130 n n C5' C4' ATP sing 131 n n C5' "H5'1" ATP sing 132 n n C5' "H5'2" ATP sing 133 n n C4' O4' ATP sing 134 n n C4' C3' ATP sing 135 n n C4' H4' ATP sing 136 n n O4' C1' ATP sing 137 n n C3' O3' ATP sing 138 n n C3' C2' ATP sing 139 n n C3' H3' ATP sing 140 n n O3' HO3' ATP sing 141 n n C2' O2' ATP sing 142 n n C2' C1' ATP sing 143 n n C2' H2' ATP sing 144 n n O2' HO2' ATP sing 145 n n C1' N9 ATP sing 146 n n C1' H1' ATP sing 147 n n N9 C8 ATP sing 148 n y N9 C4 ATP sing 149 n y C8 N7 ATP doub 150 n y C8 H8 ATP sing 151 n n N7 C5 ATP sing 152 n y C5 C6 ATP sing 153 n y C5 C4 ATP doub 154 n y C6 N6 ATP sing 155 n n C6 N1 ATP doub 156 n y N6 HN61 ATP sing 157 n n N6 HN62 ATP sing 158 n n N1 C2 ATP sing 159 n y C2 N3 ATP doub 160 n y C2 H2 ATP sing 161 n n N3 C4 ATP sing 162 n y # _atom_sites.entry_id 5LQY _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code EA 18 ATP A 1 600 600 ATP ATP . FA 19 MG A 1 601 601 MG MG . GA 20 ADP B 1 600 600 ADP ADP . HA 19 MG B 1 601 601 MG MG . IA 20 ADP C 1 600 600 ADP ADP . JA 19 MG C 1 601 601 MG MG . KA 20 ADP D 1 600 600 ADP ADP . LA 19 MG D 1 601 601 MG MG . MA 20 ADP E 1 600 600 ADP ADP . NA 20 ADP F 1 600 600 ADP ADP . OA 19 MG F 1 601 601 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . EA 18 284.76 248.131 315.745 0.75 52 ? PG ATP 600 A 1 HETATM 2 O O1G ATP . . . EA 18 283.567 248.865 315.18 0.75 45.79 ? O1G ATP 600 A 1 HETATM 3 O O2G ATP . . . EA 18 285.353 248.767 316.979 0.75 50.83 ? O2G ATP 600 A 1 HETATM 4 O O3G ATP . . . EA 18 284.581 246.635 315.839 0.75 56.34 ? O3G ATP 600 A 1 HETATM 5 P PB ATP . . . EA 18 287.366 247.689 314.818 1 50.9 ? PB ATP 600 A 1 HETATM 6 O O1B ATP . . . EA 18 287.234 246.185 314.829 1 52.08 ? O1B ATP 600 A 1 HETATM 7 O O2B ATP . . . EA 18 288.026 248.391 315.98 1 50.92 ? O2B ATP 600 A 1 HETATM 8 O O3B ATP . . . EA 18 285.898 248.32 314.62 1 50.76 ? O3B ATP 600 A 1 HETATM 9 P PA ATP . . . EA 18 289.662 247.737 313.202 1 50.84 ? PA ATP 600 A 1 HETATM 10 O O1A ATP . . . EA 18 290.361 248.947 312.63 1 53.66 ? O1A ATP 600 A 1 HETATM 11 O O2A ATP . . . EA 18 290.201 247.1 314.461 1 45.71 ? O2A ATP 600 A 1 HETATM 12 O O3A ATP . . . EA 18 288.125 248.142 313.469 1 53.19 ? O3A ATP 600 A 1 HETATM 13 O O5' ATP . . . EA 18 289.583 246.624 312.039 1 48.83 ? O5' ATP 600 A 1 HETATM 14 C C5' ATP . . . EA 18 288.645 245.551 312.091 1 52.24 ? C5' ATP 600 A 1 HETATM 15 C C4' ATP . . . EA 18 288.963 244.544 310.993 1 55.53 ? C4' ATP 600 A 1 HETATM 16 O O4' ATP . . . EA 18 289.001 245.187 309.718 1 57.01 ? O4' ATP 600 A 1 HETATM 17 C C3' ATP . . . EA 18 290.322 243.894 311.204 1 55.82 ? C3' ATP 600 A 1 HETATM 18 O O3' ATP . . . EA 18 290.158 242.535 311.618 1 58.97 ? O3' ATP 600 A 1 HETATM 19 C C2' ATP . . . EA 18 291.019 243.949 309.859 1 57.62 ? C2' ATP 600 A 1 HETATM 20 O O2' ATP . . . EA 18 291.306 242.625 309.4 1 58.56 ? O2' ATP 600 A 1 HETATM 21 C C1' ATP . . . EA 18 290.043 244.631 308.913 1 56.01 ? C1' ATP 600 A 1 HETATM 22 N N9 ATP . . . EA 18 290.74 245.701 308.155 1 54.84 ? N9 ATP 600 A 1 HETATM 23 C C8 ATP . . . EA 18 290.839 246.991 308.526 1 53.26 ? C8 ATP 600 A 1 HETATM 24 N N7 ATP . . . EA 18 291.54 247.711 307.613 1 52.38 ? N7 ATP 600 A 1 HETATM 25 C C5 ATP . . . EA 18 291.904 246.869 306.628 1 54.12 ? C5 ATP 600 A 1 HETATM 26 C C6 ATP . . . EA 18 292.661 246.973 305.358 1 52.88 ? C6 ATP 600 A 1 HETATM 27 N N6 ATP . . . EA 18 293.184 248.155 304.95 1 49.33 ? N6 ATP 600 A 1 HETATM 28 N N1 ATP . . . EA 18 292.813 245.85 304.622 1 55.29 ? N1 ATP 600 A 1 HETATM 29 C C2 ATP . . . EA 18 292.299 244.67 305.017 1 55.29 ? C2 ATP 600 A 1 HETATM 30 N N3 ATP . . . EA 18 291.602 244.503 306.155 1 53.98 ? N3 ATP 600 A 1 HETATM 31 C C4 ATP . . . EA 18 291.374 245.545 306.99 1 55.16 ? C4 ATP 600 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 346 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 31 #