data_5LR8
#
_model_server_result.job_id            Bovvt94inensVM1ZucRaFA 
_model_server_result.datetime_utc      '2024-11-26 22:36:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5lr8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1002}' 
#
_entry.id    5LR8 
#
_exptl.entry_id    5LR8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              192.124 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CITRIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          115.21 
_cell.angle_gamma         90 
_cell.entry_id            5LR8 
_cell.length_a            229.21 
_cell.length_b            63.48 
_cell.length_c            148.82 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5LR8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,F 1 1,2 
B,E,G 2 1,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 165.822025 0 134.645301 
3 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 772 A LYS 814 1_555 C C4A PLP . A PLP 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.266 ? 
covale ? covale2 B NZ LYS 772 B LYS 814 1_555 E C4A PLP . B PLP 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.263 ? 
#
_chem_comp.formula           'C6 H8 O7' 
_chem_comp.formula_weight    192.124 
_chem_comp.id                CIT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CITRIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 CIT doub 70 n n 
C1 O2 CIT sing 71 n n 
C1 C2 CIT sing 72 n n 
O2 HO2 CIT sing 73 n n 
C2 C3 CIT sing 74 n n 
C2 H21 CIT sing 75 n n 
C2 H22 CIT sing 76 n n 
C3 O7 CIT sing 77 n n 
C3 C4 CIT sing 78 n n 
C3 C6 CIT sing 79 n n 
O7 HO7 CIT sing 80 n n 
C4 C5 CIT sing 81 n n 
C4 H41 CIT sing 82 n n 
C4 H42 CIT sing 83 n n 
C5 O3 CIT doub 84 n n 
C5 O4 CIT sing 85 n n 
O4 HO4 CIT sing 86 n n 
C6 O5 CIT doub 87 n n 
C6 O6 CIT sing 88 n n 
O6 HO6 CIT sing 89 n n 
#
_atom_sites.entry_id                     5LR8 
_atom_sites.fract_transf_matrix[1][1]    0.004363 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002054 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015753 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007427 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PLP A 1 1001 1001 PLP PLP . 
D 3 CIT A 1 1002 1002 CIT CIT . 
E 2 PLP B 1 1001 1001 PLP PLP . 
F 4 HOH A 1 1101 1145 HOH HOH . 
F 4 HOH A 2 1102 1168 HOH HOH . 
F 4 HOH A 3 1103 1101 HOH HOH . 
F 4 HOH A 4 1104 1133 HOH HOH . 
F 4 HOH A 5 1105 1157 HOH HOH . 
F 4 HOH A 6 1106 1137 HOH HOH . 
F 4 HOH A 7 1107 1160 HOH HOH . 
F 4 HOH A 8 1108 1102 HOH HOH . 
F 4 HOH A 9 1109 1103 HOH HOH . 
F 4 HOH A 10 1110 1115 HOH HOH . 
F 4 HOH A 11 1111 1122 HOH HOH . 
F 4 HOH A 12 1112 1119 HOH HOH . 
F 4 HOH A 13 1113 1154 HOH HOH . 
F 4 HOH A 14 1114 1144 HOH HOH . 
F 4 HOH A 15 1115 1125 HOH HOH . 
F 4 HOH A 16 1116 1104 HOH HOH . 
F 4 HOH A 17 1117 1105 HOH HOH . 
F 4 HOH A 18 1118 1106 HOH HOH . 
F 4 HOH A 19 1119 1123 HOH HOH . 
F 4 HOH A 20 1120 1117 HOH HOH . 
F 4 HOH A 21 1121 1129 HOH HOH . 
F 4 HOH A 22 1122 1136 HOH HOH . 
F 4 HOH A 23 1123 1132 HOH HOH . 
F 4 HOH A 24 1124 1150 HOH HOH . 
F 4 HOH A 25 1125 1107 HOH HOH . 
F 4 HOH A 26 1126 1138 HOH HOH . 
F 4 HOH A 27 1127 1127 HOH HOH . 
F 4 HOH A 28 1128 1108 HOH HOH . 
F 4 HOH A 29 1129 1140 HOH HOH . 
F 4 HOH A 30 1130 1121 HOH HOH . 
F 4 HOH A 31 1131 1124 HOH HOH . 
F 4 HOH A 32 1132 1148 HOH HOH . 
F 4 HOH A 33 1133 1159 HOH HOH . 
F 4 HOH A 34 1134 1147 HOH HOH . 
F 4 HOH A 35 1135 1134 HOH HOH . 
F 4 HOH A 36 1136 1156 HOH HOH . 
F 4 HOH A 37 1137 1130 HOH HOH . 
F 4 HOH A 38 1138 1126 HOH HOH . 
F 4 HOH A 39 1139 1120 HOH HOH . 
F 4 HOH A 40 1140 1109 HOH HOH . 
F 4 HOH A 41 1141 1110 HOH HOH . 
F 4 HOH A 42 1142 1116 HOH HOH . 
F 4 HOH A 43 1143 1141 HOH HOH . 
F 4 HOH A 44 1144 1118 HOH HOH . 
F 4 HOH A 45 1145 1151 HOH HOH . 
F 4 HOH A 46 1146 1139 HOH HOH . 
F 4 HOH A 47 1147 1153 HOH HOH . 
F 4 HOH A 48 1148 1169 HOH HOH . 
F 4 HOH A 49 1149 1165 HOH HOH . 
F 4 HOH A 50 1150 1161 HOH HOH . 
F 4 HOH A 51 1151 1158 HOH HOH . 
F 4 HOH A 52 1152 1155 HOH HOH . 
F 4 HOH A 53 1153 1143 HOH HOH . 
F 4 HOH A 54 1154 1131 HOH HOH . 
F 4 HOH A 55 1155 1164 HOH HOH . 
F 4 HOH A 56 1156 1111 HOH HOH . 
F 4 HOH A 57 1157 1162 HOH HOH . 
F 4 HOH A 58 1158 1149 HOH HOH . 
F 4 HOH A 59 1159 1135 HOH HOH . 
F 4 HOH A 60 1160 1142 HOH HOH . 
F 4 HOH A 61 1161 1112 HOH HOH . 
F 4 HOH A 62 1162 1152 HOH HOH . 
F 4 HOH A 63 1163 1113 HOH HOH . 
F 4 HOH A 64 1164 1128 HOH HOH . 
F 4 HOH A 65 1165 1163 HOH HOH . 
F 4 HOH A 66 1166 1146 HOH HOH . 
F 4 HOH A 67 1167 1167 HOH HOH . 
F 4 HOH A 68 1168 1114 HOH HOH . 
F 4 HOH A 69 1169 1166 HOH HOH . 
G 4 HOH B 1 1101 1101 HOH HOH . 
G 4 HOH B 2 1102 1102 HOH HOH . 
G 4 HOH B 3 1103 1152 HOH HOH . 
G 4 HOH B 4 1104 1131 HOH HOH . 
G 4 HOH B 5 1105 1168 HOH HOH . 
G 4 HOH B 6 1106 1139 HOH HOH . 
G 4 HOH B 7 1107 1159 HOH HOH . 
G 4 HOH B 8 1108 1171 HOH HOH . 
G 4 HOH B 9 1109 1121 HOH HOH . 
G 4 HOH B 10 1110 1156 HOH HOH . 
G 4 HOH B 11 1111 1148 HOH HOH . 
G 4 HOH B 12 1112 1130 HOH HOH . 
G 4 HOH B 13 1113 1120 HOH HOH . 
G 4 HOH B 14 1114 1103 HOH HOH . 
G 4 HOH B 15 1115 1118 HOH HOH . 
G 4 HOH B 16 1116 1119 HOH HOH . 
G 4 HOH B 17 1117 1155 HOH HOH . 
G 4 HOH B 18 1118 1144 HOH HOH . 
G 4 HOH B 19 1119 1135 HOH HOH . 
G 4 HOH B 20 1120 1179 HOH HOH . 
G 4 HOH B 21 1121 1138 HOH HOH . 
G 4 HOH B 22 1122 1136 HOH HOH . 
G 4 HOH B 23 1123 1174 HOH HOH . 
G 4 HOH B 24 1124 1122 HOH HOH . 
G 4 HOH B 25 1125 1112 HOH HOH . 
G 4 HOH B 26 1126 1169 HOH HOH . 
G 4 HOH B 27 1127 1178 HOH HOH . 
G 4 HOH B 28 1128 1132 HOH HOH . 
G 4 HOH B 29 1129 1162 HOH HOH . 
G 4 HOH B 30 1130 1147 HOH HOH . 
G 4 HOH B 31 1131 1173 HOH HOH . 
G 4 HOH B 32 1132 1133 HOH HOH . 
G 4 HOH B 33 1133 1104 HOH HOH . 
G 4 HOH B 34 1134 1123 HOH HOH . 
G 4 HOH B 35 1135 1146 HOH HOH . 
G 4 HOH B 36 1136 1113 HOH HOH . 
G 4 HOH B 37 1137 1175 HOH HOH . 
G 4 HOH B 38 1138 1105 HOH HOH . 
G 4 HOH B 39 1139 1154 HOH HOH . 
G 4 HOH B 40 1140 1129 HOH HOH . 
G 4 HOH B 41 1141 1117 HOH HOH . 
G 4 HOH B 42 1142 1161 HOH HOH . 
G 4 HOH B 43 1143 1158 HOH HOH . 
G 4 HOH B 44 1144 1106 HOH HOH . 
G 4 HOH B 45 1145 1107 HOH HOH . 
G 4 HOH B 46 1146 1125 HOH HOH . 
G 4 HOH B 47 1147 1111 HOH HOH . 
G 4 HOH B 48 1148 1153 HOH HOH . 
G 4 HOH B 49 1149 1108 HOH HOH . 
G 4 HOH B 50 1150 1170 HOH HOH . 
G 4 HOH B 51 1151 1114 HOH HOH . 
G 4 HOH B 52 1152 1140 HOH HOH . 
G 4 HOH B 53 1153 1109 HOH HOH . 
G 4 HOH B 54 1154 1128 HOH HOH . 
G 4 HOH B 55 1155 1115 HOH HOH . 
G 4 HOH B 56 1156 1145 HOH HOH . 
G 4 HOH B 57 1157 1126 HOH HOH . 
G 4 HOH B 58 1158 1141 HOH HOH . 
G 4 HOH B 59 1159 1176 HOH HOH . 
G 4 HOH B 60 1160 1163 HOH HOH . 
G 4 HOH B 61 1161 1137 HOH HOH . 
G 4 HOH B 62 1162 1172 HOH HOH . 
G 4 HOH B 63 1163 1149 HOH HOH . 
G 4 HOH B 64 1164 1142 HOH HOH . 
G 4 HOH B 65 1165 1167 HOH HOH . 
G 4 HOH B 66 1166 1116 HOH HOH . 
G 4 HOH B 67 1167 1134 HOH HOH . 
G 4 HOH B 68 1168 1177 HOH HOH . 
G 4 HOH B 69 1169 1150 HOH HOH . 
G 4 HOH B 70 1170 1166 HOH HOH . 
G 4 HOH B 71 1171 1127 HOH HOH . 
G 4 HOH B 72 1172 1164 HOH HOH . 
G 4 HOH B 73 1173 1143 HOH HOH . 
G 4 HOH B 74 1174 1160 HOH HOH . 
G 4 HOH B 75 1175 1110 HOH HOH . 
G 4 HOH B 76 1176 1124 HOH HOH . 
G 4 HOH B 77 1177 1165 HOH HOH . 
G 4 HOH B 78 1178 1157 HOH HOH . 
G 4 HOH B 79 1179 1151 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 CIT . . . D 3 56.134 0.527 48.243 1 96.26 ? C1 CIT 1002 A 1 
HETATM 2 O O1 CIT . . . D 3 57.087 -0.272 48.342 1 96.8 ? O1 CIT 1002 A 1 
HETATM 3 O O2 CIT . . . D 3 55.476 0.942 49.222 1 94.02 ? O2 CIT 1002 A 1 
HETATM 4 C C2 CIT . . . D 3 55.758 0.997 46.863 1 95.92 ? C2 CIT 1002 A 1 
HETATM 5 C C3 CIT . . . D 3 56.708 2.063 46.309 1 96.51 ? C3 CIT 1002 A 1 
HETATM 6 O O7 CIT . . . D 3 57.501 2.657 47.346 1 96.94 ? O7 CIT 1002 A 1 
HETATM 7 C C4 CIT . . . D 3 55.924 3.178 45.601 1 97.8 ? C4 CIT 1002 A 1 
HETATM 8 C C5 CIT . . . D 3 54.797 3.768 46.436 1 98.36 ? C5 CIT 1002 A 1 
HETATM 9 O O3 CIT . . . D 3 53.857 4.334 45.83 1 93.73 ? O3 CIT 1002 A 1 
HETATM 10 O O4 CIT . . . D 3 54.825 3.675 47.688 1 97.08 ? O4 CIT 1002 A 1 
HETATM 11 C C6 CIT . . . D 3 57.668 1.394 45.352 1 95.75 ? C6 CIT 1002 A 1 
HETATM 12 O O5 CIT . . . D 3 57.808 1.866 44.205 1 98.05 ? O5 CIT 1002 A 1 
HETATM 13 O O6 CIT . . . D 3 58.315 0.391 45.728 1 94.32 ? O6 CIT 1002 A 1 
#
_model_server_stats.io_time_ms              53 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    53 
_model_server_stats.query_time_ms           352 
_model_server_stats.encode_time_ms          13 
_model_server_stats.element_count           13 
#