data_5LRQ # _model_server_result.job_id 5lQLL4a63IJ-zHPL75pxAg _model_server_result.datetime_utc '2024-11-21 23:29:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5lrq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5LRQ # _exptl.entry_id 5LRQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 474.555 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-{[2-ethoxy-4-(4-hydroxypiperidin-1-yl)phenyl]amino}-5,11-dimethyl-5,11-dihydro-6H-pyrimido[4,5-b][1,4]benzodiazepin-6-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5LRQ _cell.length_a 53.923 _cell.length_b 53.923 _cell.length_c 89.32 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LRQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C26 H30 N6 O3' _chem_comp.formula_weight 474.555 _chem_comp.id 4WG _chem_comp.mon_nstd_flag . _chem_comp.name 2-{[2-ethoxy-4-(4-hydroxypiperidin-1-yl)phenyl]amino}-5,11-dimethyl-5,11-dihydro-6H-pyrimido[4,5-b][1,4]benzodiazepin-6-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 4WG sing 1 n n C19 N4 4WG sing 2 n n N1 C9 4WG doub 3 n y N1 C8 4WG sing 4 n y C9 C10 4WG sing 5 n y C1 O 4WG sing 6 n n O C2 4WG sing 7 n n C8 N 4WG sing 8 n n C8 N2 4WG doub 9 n y N4 C10 4WG sing 10 n n N4 C18 4WG sing 11 n n N C7 4WG sing 12 n n C10 C11 4WG doub 13 n y C2 C7 4WG doub 14 n y C2 C3 4WG sing 15 n y O1 C18 4WG doub 16 n n C7 C6 4WG sing 17 n y C18 C17 4WG sing 18 n n N2 C11 4WG sing 19 n y C11 N3 4WG sing 20 n n C3 C4 4WG doub 21 n y C17 C16 4WG doub 22 n y C17 C12 4WG sing 23 n y C6 C5 4WG doub 24 n y N3 C12 4WG sing 25 n n N3 C20 4WG sing 26 n n C16 C15 4WG sing 27 n y C12 C13 4WG doub 28 n y C4 C5 4WG sing 29 n y C4 N5 4WG sing 30 n n C15 C14 4WG doub 31 n y N5 C21 4WG sing 32 n n N5 C25 4WG sing 33 n n C21 C22 4WG sing 34 n n C13 C14 4WG sing 35 n y C25 C24 4WG sing 36 n n C22 C23 4WG sing 37 n n C24 C23 4WG sing 38 n n C23 O2 4WG sing 39 n n C1 H1 4WG sing 40 n n C1 H2 4WG sing 41 n n C3 H3 4WG sing 42 n n C5 H4 4WG sing 43 n n C6 H5 4WG sing 44 n n C15 H6 4WG sing 45 n n C16 H7 4WG sing 46 n n C19 H8 4WG sing 47 n n C19 H9 4WG sing 48 n n C19 H10 4WG sing 49 n n C21 H11 4WG sing 50 n n C21 H12 4WG sing 51 n n C23 H13 4WG sing 52 n n C24 H14 4WG sing 53 n n C24 H15 4WG sing 54 n n C9 H16 4WG sing 55 n n C14 H17 4WG sing 56 n n C13 H18 4WG sing 57 n n C20 H19 4WG sing 58 n n C20 H20 4WG sing 59 n n C20 H21 4WG sing 60 n n N H22 4WG sing 61 n n C H23 4WG sing 62 n n C H24 4WG sing 63 n n C H25 4WG sing 64 n n C25 H26 4WG sing 65 n n C25 H27 4WG sing 66 n n O2 H28 4WG sing 67 n n C22 H29 4WG sing 68 n n C22 H30 4WG sing 69 n n # _atom_sites.entry_id 5LRQ _atom_sites.fract_transf_matrix[1][1] 0.018545 _atom_sites.fract_transf_matrix[1][2] 0.010707 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021414 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011196 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 4WG A 1 201 1 4WG DRG . C 3 HOH A 1 301 82 HOH HOH . C 3 HOH A 2 302 36 HOH HOH . C 3 HOH A 3 303 89 HOH HOH . C 3 HOH A 4 304 55 HOH HOH . C 3 HOH A 5 305 122 HOH HOH . C 3 HOH A 6 306 63 HOH HOH . C 3 HOH A 7 307 43 HOH HOH . C 3 HOH A 8 308 86 HOH HOH . C 3 HOH A 9 309 52 HOH HOH . C 3 HOH A 10 310 60 HOH HOH . C 3 HOH A 11 311 124 HOH HOH . C 3 HOH A 12 312 15 HOH HOH . C 3 HOH A 13 313 85 HOH HOH . C 3 HOH A 14 314 113 HOH HOH . C 3 HOH A 15 315 13 HOH HOH . C 3 HOH A 16 316 17 HOH HOH . C 3 HOH A 17 317 49 HOH HOH . C 3 HOH A 18 318 51 HOH HOH . C 3 HOH A 19 319 50 HOH HOH . C 3 HOH A 20 320 65 HOH HOH . C 3 HOH A 21 321 114 HOH HOH . C 3 HOH A 22 322 27 HOH HOH . C 3 HOH A 23 323 18 HOH HOH . C 3 HOH A 24 324 75 HOH HOH . C 3 HOH A 25 325 4 HOH HOH . C 3 HOH A 26 326 96 HOH HOH . C 3 HOH A 27 327 54 HOH HOH . C 3 HOH A 28 328 21 HOH HOH . C 3 HOH A 29 329 92 HOH HOH . C 3 HOH A 30 330 6 HOH HOH . C 3 HOH A 31 331 31 HOH HOH . C 3 HOH A 32 332 24 HOH HOH . C 3 HOH A 33 333 73 HOH HOH . C 3 HOH A 34 334 7 HOH HOH . C 3 HOH A 35 335 28 HOH HOH . C 3 HOH A 36 336 45 HOH HOH . C 3 HOH A 37 337 104 HOH HOH . C 3 HOH A 38 338 57 HOH HOH . C 3 HOH A 39 339 2 HOH HOH . C 3 HOH A 40 340 46 HOH HOH . C 3 HOH A 41 341 44 HOH HOH . C 3 HOH A 42 342 79 HOH HOH . C 3 HOH A 43 343 35 HOH HOH . C 3 HOH A 44 344 38 HOH HOH . C 3 HOH A 45 345 93 HOH HOH . C 3 HOH A 46 346 76 HOH HOH . C 3 HOH A 47 347 8 HOH HOH . C 3 HOH A 48 348 34 HOH HOH . C 3 HOH A 49 349 20 HOH HOH . C 3 HOH A 50 350 106 HOH HOH . C 3 HOH A 51 351 12 HOH HOH . C 3 HOH A 52 352 72 HOH HOH . C 3 HOH A 53 353 25 HOH HOH . C 3 HOH A 54 354 3 HOH HOH . C 3 HOH A 55 355 109 HOH HOH . C 3 HOH A 56 356 84 HOH HOH . C 3 HOH A 57 357 29 HOH HOH . C 3 HOH A 58 358 33 HOH HOH . C 3 HOH A 59 359 16 HOH HOH . C 3 HOH A 60 360 118 HOH HOH . C 3 HOH A 61 361 26 HOH HOH . C 3 HOH A 62 362 64 HOH HOH . C 3 HOH A 63 363 14 HOH HOH . C 3 HOH A 64 364 19 HOH HOH . C 3 HOH A 65 365 40 HOH HOH . C 3 HOH A 66 366 61 HOH HOH . C 3 HOH A 67 367 1 HOH HOH . C 3 HOH A 68 368 77 HOH HOH . C 3 HOH A 69 369 58 HOH HOH . C 3 HOH A 70 370 32 HOH HOH . C 3 HOH A 71 371 9 HOH HOH . C 3 HOH A 72 372 120 HOH HOH . C 3 HOH A 73 373 112 HOH HOH . C 3 HOH A 74 374 47 HOH HOH . C 3 HOH A 75 375 11 HOH HOH . C 3 HOH A 76 376 56 HOH HOH . C 3 HOH A 77 377 22 HOH HOH . C 3 HOH A 78 378 87 HOH HOH . C 3 HOH A 79 379 10 HOH HOH . C 3 HOH A 80 380 53 HOH HOH . C 3 HOH A 81 381 39 HOH HOH . C 3 HOH A 82 382 91 HOH HOH . C 3 HOH A 83 383 23 HOH HOH . C 3 HOH A 84 384 110 HOH HOH . C 3 HOH A 85 385 67 HOH HOH . C 3 HOH A 86 386 78 HOH HOH . C 3 HOH A 87 387 5 HOH HOH . C 3 HOH A 88 388 59 HOH HOH . C 3 HOH A 89 389 94 HOH HOH . C 3 HOH A 90 390 88 HOH HOH . C 3 HOH A 91 391 102 HOH HOH . C 3 HOH A 92 392 71 HOH HOH . C 3 HOH A 93 393 105 HOH HOH . C 3 HOH A 94 394 81 HOH HOH . C 3 HOH A 95 395 42 HOH HOH . C 3 HOH A 96 396 66 HOH HOH . C 3 HOH A 97 397 48 HOH HOH . C 3 HOH A 98 398 80 HOH HOH . C 3 HOH A 99 399 30 HOH HOH . C 3 HOH A 100 400 125 HOH HOH . C 3 HOH A 101 401 111 HOH HOH . C 3 HOH A 102 402 121 HOH HOH . C 3 HOH A 103 403 117 HOH HOH . C 3 HOH A 104 404 37 HOH HOH . C 3 HOH A 105 405 126 HOH HOH . C 3 HOH A 106 406 116 HOH HOH . C 3 HOH A 107 407 97 HOH HOH . C 3 HOH A 108 408 127 HOH HOH . C 3 HOH A 109 409 101 HOH HOH . C 3 HOH A 110 410 103 HOH HOH . C 3 HOH A 111 411 108 HOH HOH . C 3 HOH A 112 412 62 HOH HOH . C 3 HOH A 113 413 69 HOH HOH . C 3 HOH A 114 414 107 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 4WG . . . B 2 28.882 3.832 104.237 1 20.74 ? C1 4WG 201 A 1 HETATM 2 C C2 4WG . . . B 2 31.165 3.254 103.695 1 19.53 ? C2 4WG 201 A 1 HETATM 3 C C3 4WG . . . B 2 30.83 2.089 103.021 1 17.12 ? C3 4WG 201 A 1 HETATM 4 C C4 4WG . . . B 2 31.823 1.327 102.391 1 18.08 ? C4 4WG 201 A 1 HETATM 5 C C5 4WG . . . B 2 33.144 1.752 102.482 1 16.94 ? C5 4WG 201 A 1 HETATM 6 C C6 4WG . . . B 2 33.487 2.912 103.127 1 16.89 ? C6 4WG 201 A 1 HETATM 7 C C7 4WG . . . B 2 32.501 3.673 103.752 1 18.67 ? C7 4WG 201 A 1 HETATM 8 C C8 4WG . . . B 2 33.892 5.616 104.618 1 16.45 ? C8 4WG 201 A 1 HETATM 9 C C11 4WG . . . B 2 35.928 6.258 103.733 1 18.48 ? C11 4WG 201 A 1 HETATM 10 C C12 4WG . . . B 2 38.23 5.613 103.364 1 19.09 ? C12 4WG 201 A 1 HETATM 11 C C15 4WG . . . B 2 40.633 4.863 104.531 1 20.42 ? C15 4WG 201 A 1 HETATM 12 C C16 4WG . . . B 2 40.085 6.106 104.783 1 19.93 ? C16 4WG 201 A 1 HETATM 13 C C17 4WG . . . B 2 38.861 6.48 104.271 1 17.25 ? C17 4WG 201 A 1 HETATM 14 C C18 4WG . . . B 2 38.423 7.901 104.514 1 17.43 ? C18 4WG 201 A 1 HETATM 15 C C19 4WG . . . B 2 36.661 9.579 104.822 1 14.44 ? C19 4WG 201 A 1 HETATM 16 C C21 4WG . . . B 2 32.595 -0.9 101.832 1 20.75 ? C21 4WG 201 A 1 HETATM 17 C C23 4WG . . . B 2 30.989 -2.675 101.006 1 23.16 ? C23 4WG 201 A 1 HETATM 18 C C24 4WG . . . B 2 29.959 -1.6 100.749 1 23.98 ? C24 4WG 201 A 1 HETATM 19 O O1 4WG . . . B 2 39.265 8.8 104.533 1 17.28 ? O1 4WG 201 A 1 HETATM 20 N N4 4WG . . . B 2 37.112 8.181 104.725 1 15.22 ? N4 4WG 201 A 1 HETATM 21 C C10 4WG . . . B 2 36.056 7.217 104.766 1 16.7 ? C10 4WG 201 A 1 HETATM 22 C C9 4WG . . . B 2 34.989 7.318 105.659 1 17.97 ? C9 4WG 201 A 1 HETATM 23 N N1 4WG . . . B 2 33.934 6.504 105.619 1 16.75 ? N1 4WG 201 A 1 HETATM 24 C C14 4WG . . . B 2 40.003 4.011 103.654 1 19.3 ? C14 4WG 201 A 1 HETATM 25 C C13 4WG . . . B 2 38.775 4.337 103.146 1 19.67 ? C13 4WG 201 A 1 HETATM 26 N N3 4WG . . . B 2 36.915 5.911 102.862 1 18 ? N3 4WG 201 A 1 HETATM 27 C C20 4WG . . . B 2 36.524 5.443 101.53 1 19.31 ? C20 4WG 201 A 1 HETATM 28 N N2 4WG . . . B 2 34.859 5.451 103.698 1 16.76 ? N2 4WG 201 A 1 HETATM 29 N N 4WG . . . B 2 32.791 4.819 104.535 1 17.6 ? N 4WG 201 A 1 HETATM 30 O O 4WG . . . B 2 30.288 4.053 104.358 1 20.03 ? O 4WG 201 A 1 HETATM 31 C C 4WG . . . B 2 28.237 4.932 105.018 1 20.33 ? C 4WG 201 A 1 HETATM 32 N N5 4WG . . . B 2 31.512 0.103 101.781 1 18.69 ? N5 4WG 201 A 1 HETATM 33 C C25 4WG . . . B 2 30.128 -0.336 101.564 1 23.71 ? C25 4WG 201 A 1 HETATM 34 O O2 4WG . . . B 2 30.928 -3.703 100.035 1 24.74 ? O2 4WG 201 A 1 HETATM 35 C C22 4WG . . . B 2 32.375 -2.1 100.962 1 21.52 ? C22 4WG 201 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 35 #