data_5LS2 # _model_server_result.job_id F5aZ1ujDsak5eKiq3iGfhA _model_server_result.datetime_utc '2024-11-27 00:56:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ls2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":301}' # _entry.id 5LS2 # _exptl.entry_id 5LS2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.7 _cell.angle_gamma 90 _cell.entry_id 5LS2 _cell.length_a 45.29 _cell.length_b 130.69 _cell.length_c 53.63 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LS2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I,K 1 1 B,F,G,H,J,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 J N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG D 1 NAG 2 n C NAG 2 C 2 NAG D 2 NAG 2 n D NAG 1 D 1 NAG D 3 NAG 2 n D NAG 2 D 2 NAG D 4 NAG 2 n E NAG 1 E 1 NAG D 5 NAG 2 n E NAG 2 E 2 NAG D 6 NAG 2 n F NAG 1 F 1 NAG D 7 NAG 2 n F NAG 2 F 2 NAG D 8 NAG 2 n G NAG 1 G 1 NAG D 9 NAG 2 n G NAG 2 G 2 NAG D 10 NAG 2 n H NAG 1 H 1 NAG D 13 NAG 2 n H NAG 2 H 2 NAG D 14 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 2 A CYS 28 1_555 A SG CYS 67 A CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf2 A SG CYS 6 A CYS 32 1_555 A SG CYS 129 A CYS 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf3 A SG CYS 65 A CYS 91 1_555 A SG CYS 127 A CYS 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf4 B SG CYS 2 B CYS 28 1_555 B SG CYS 67 B CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf5 B SG CYS 6 B CYS 32 1_555 B SG CYS 129 B CYS 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf6 B SG CYS 65 B CYS 91 1_555 B SG CYS 127 B CYS 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? covale ? covale1 A ND2 ASN 20 A ASN 46 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale2 A ND2 ASN 97 A ASN 123 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale3 A ND2 ASN 122 A ASN 148 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale4 B ND2 ASN 20 B ASN 46 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale5 B ND2 ASN 97 B ASN 123 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale6 B ND2 ASN 122 B ASN 148 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale7 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale8 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale9 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale10 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale11 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale12 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 320 n n S O2 SO4 doub 321 n n S O3 SO4 sing 322 n n S O4 SO4 sing 323 n n # _atom_sites.entry_id 5LS2 _atom_sites.fract_transf_matrix[1][1] 0.02208 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007047 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007652 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019573 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 SO4 A 1 301 2 SO4 SO4 . J 3 SO4 B 1 301 1 SO4 SO4 . K 4 HOH A 1 401 52 HOH HOH . K 4 HOH A 2 402 29 HOH HOH . K 4 HOH A 3 403 58 HOH HOH . K 4 HOH A 4 404 15 HOH HOH . K 4 HOH A 5 405 19 HOH HOH . K 4 HOH A 6 406 105 HOH HOH . K 4 HOH A 7 407 118 HOH HOH . K 4 HOH A 8 408 49 HOH HOH . K 4 HOH A 9 409 18 HOH HOH . K 4 HOH A 10 410 16 HOH HOH . K 4 HOH A 11 411 57 HOH HOH . K 4 HOH A 12 412 65 HOH HOH . K 4 HOH A 13 413 24 HOH HOH . K 4 HOH A 14 414 1 HOH HOH . K 4 HOH A 15 415 2 HOH HOH . K 4 HOH A 16 416 34 HOH HOH . K 4 HOH A 17 417 106 HOH HOH . K 4 HOH A 18 418 134 HOH HOH . K 4 HOH A 19 419 20 HOH HOH . K 4 HOH A 20 420 79 HOH HOH . K 4 HOH A 21 421 73 HOH HOH . K 4 HOH A 22 422 74 HOH HOH . K 4 HOH A 23 423 96 HOH HOH . K 4 HOH A 24 424 56 HOH HOH . K 4 HOH A 25 425 133 HOH HOH . K 4 HOH A 26 426 123 HOH HOH . K 4 HOH A 27 427 44 HOH HOH . K 4 HOH A 28 428 77 HOH HOH . K 4 HOH A 29 429 5 HOH HOH . K 4 HOH A 30 430 67 HOH HOH . K 4 HOH A 31 431 38 HOH HOH . K 4 HOH A 32 432 25 HOH HOH . K 4 HOH A 33 433 117 HOH HOH . K 4 HOH A 34 434 120 HOH HOH . K 4 HOH A 35 435 90 HOH HOH . K 4 HOH A 36 436 62 HOH HOH . K 4 HOH A 37 437 93 HOH HOH . K 4 HOH A 38 438 66 HOH HOH . K 4 HOH A 39 439 60 HOH HOH . K 4 HOH A 40 440 99 HOH HOH . K 4 HOH A 41 441 12 HOH HOH . K 4 HOH A 42 442 129 HOH HOH . K 4 HOH A 43 443 81 HOH HOH . K 4 HOH A 44 444 78 HOH HOH . K 4 HOH A 45 445 76 HOH HOH . K 4 HOH A 46 446 35 HOH HOH . K 4 HOH A 47 447 98 HOH HOH . K 4 HOH A 48 448 7 HOH HOH . K 4 HOH A 49 449 89 HOH HOH . K 4 HOH A 50 450 32 HOH HOH . K 4 HOH A 51 451 10 HOH HOH . K 4 HOH A 52 452 83 HOH HOH . K 4 HOH A 53 453 41 HOH HOH . K 4 HOH A 54 454 124 HOH HOH . K 4 HOH A 55 455 40 HOH HOH . K 4 HOH A 56 456 50 HOH HOH . K 4 HOH A 57 457 94 HOH HOH . K 4 HOH A 58 458 48 HOH HOH . K 4 HOH A 59 459 102 HOH HOH . K 4 HOH A 60 460 100 HOH HOH . K 4 HOH A 61 461 141 HOH HOH . K 4 HOH A 62 462 115 HOH HOH . K 4 HOH A 63 463 54 HOH HOH . K 4 HOH A 64 464 51 HOH HOH . K 4 HOH A 65 465 126 HOH HOH . K 4 HOH A 66 466 92 HOH HOH . K 4 HOH A 67 467 97 HOH HOH . K 4 HOH A 68 468 121 HOH HOH . K 4 HOH A 69 469 135 HOH HOH . K 4 HOH A 70 470 132 HOH HOH . K 4 HOH A 71 471 131 HOH HOH . K 4 HOH A 72 472 109 HOH HOH . K 4 HOH A 73 473 108 HOH HOH . K 4 HOH A 74 474 53 HOH HOH . K 4 HOH A 75 475 122 HOH HOH . K 4 HOH A 76 476 72 HOH HOH . K 4 HOH A 77 477 128 HOH HOH . L 4 HOH B 1 401 27 HOH HOH . L 4 HOH B 2 402 139 HOH HOH . L 4 HOH B 3 403 85 HOH HOH . L 4 HOH B 4 404 103 HOH HOH . L 4 HOH B 5 405 31 HOH HOH . L 4 HOH B 6 406 75 HOH HOH . L 4 HOH B 7 407 101 HOH HOH . L 4 HOH B 8 408 3 HOH HOH . L 4 HOH B 9 409 26 HOH HOH . L 4 HOH B 10 410 22 HOH HOH . L 4 HOH B 11 411 130 HOH HOH . L 4 HOH B 12 412 119 HOH HOH . L 4 HOH B 13 413 45 HOH HOH . L 4 HOH B 14 414 37 HOH HOH . L 4 HOH B 15 415 14 HOH HOH . L 4 HOH B 16 416 71 HOH HOH . L 4 HOH B 17 417 86 HOH HOH . L 4 HOH B 18 418 8 HOH HOH . L 4 HOH B 19 419 70 HOH HOH . L 4 HOH B 20 420 4 HOH HOH . L 4 HOH B 21 421 13 HOH HOH . L 4 HOH B 22 422 43 HOH HOH . L 4 HOH B 23 423 46 HOH HOH . L 4 HOH B 24 424 21 HOH HOH . L 4 HOH B 25 425 33 HOH HOH . L 4 HOH B 26 426 9 HOH HOH . L 4 HOH B 27 427 23 HOH HOH . L 4 HOH B 28 428 39 HOH HOH . L 4 HOH B 29 429 113 HOH HOH . L 4 HOH B 30 430 30 HOH HOH . L 4 HOH B 31 431 28 HOH HOH . L 4 HOH B 32 432 88 HOH HOH . L 4 HOH B 33 433 55 HOH HOH . L 4 HOH B 34 434 114 HOH HOH . L 4 HOH B 35 435 80 HOH HOH . L 4 HOH B 36 436 59 HOH HOH . L 4 HOH B 37 437 63 HOH HOH . L 4 HOH B 38 438 36 HOH HOH . L 4 HOH B 39 439 17 HOH HOH . L 4 HOH B 40 440 61 HOH HOH . L 4 HOH B 41 441 136 HOH HOH . L 4 HOH B 42 442 82 HOH HOH . L 4 HOH B 43 443 11 HOH HOH . L 4 HOH B 44 444 47 HOH HOH . L 4 HOH B 45 445 6 HOH HOH . L 4 HOH B 46 446 95 HOH HOH . L 4 HOH B 47 447 68 HOH HOH . L 4 HOH B 48 448 104 HOH HOH . L 4 HOH B 49 449 138 HOH HOH . L 4 HOH B 50 450 64 HOH HOH . L 4 HOH B 51 451 137 HOH HOH . L 4 HOH B 52 452 127 HOH HOH . L 4 HOH B 53 453 84 HOH HOH . L 4 HOH B 54 454 69 HOH HOH . L 4 HOH B 55 455 42 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . J 3 16.165 -7.97 59.239 0.81 46.02 ? S SO4 301 B 1 HETATM 2 O O1 SO4 . . . J 3 17.518 -8.513 59.27 1 40.95 ? O1 SO4 301 B 1 HETATM 3 O O2 SO4 . . . J 3 15.589 -8.166 57.912 0.88 46.69 ? O2 SO4 301 B 1 HETATM 4 O O3 SO4 . . . J 3 15.351 -8.663 60.232 0.77 47.59 ? O3 SO4 301 B 1 HETATM 5 O O4 SO4 . . . J 3 16.203 -6.54 59.544 1 52.44 ? O4 SO4 301 B 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 5 #