data_5LSA # _model_server_result.job_id ml4vRyyr_jEhVUqHP5a5bA _model_server_result.datetime_utc '2024-11-01 04:25:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5lsa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 5LSA # _exptl.entry_id 5LSA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 200.106 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3,5-DINITROCATECHOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 118.3 _cell.angle_gamma 90 _cell.entry_id 5LSA _cell.length_a 43.021 _cell.length_b 61.311 _cell.length_c 44.773 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LSA _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 141 A ASP 191 1_555 B MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc2 A OD2 ASP 169 A ASP 219 1_555 B MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc3 A OD1 ASN 170 A ASN 220 1_555 B MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc4 B MG MG . A MG 301 1_555 E O1 DNC . A DNC 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc5 B MG MG . A MG 301 1_555 E O2 DNC . A DNC 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc6 B MG MG . A MG 301 1_555 F O HOH . A HOH 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? # _chem_comp.formula 'C6 H4 N2 O6' _chem_comp.formula_weight 200.106 _chem_comp.id DNC _chem_comp.mon_nstd_flag . _chem_comp.name 3,5-DINITROCATECHOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 DNC sing 83 n n C1 C2 DNC doub 84 n y C1 C6 DNC sing 85 n y O1 HO1 DNC sing 86 n n C2 O2 DNC sing 87 n n C2 C3 DNC sing 88 n y O2 HO2 DNC sing 89 n n C3 N1 DNC sing 90 n n C3 C4 DNC doub 91 n y N1 O3 DNC sing 92 n n N1 O4 DNC doub 93 n n C4 C5 DNC sing 94 n y C4 H4 DNC sing 95 n n C5 N2 DNC sing 96 n n C5 C6 DNC doub 97 n y N2 O5 DNC sing 98 n n N2 O6 DNC doub 99 n n C6 H6 DNC sing 100 n n # _atom_sites.entry_id 5LSA _atom_sites.fract_transf_matrix[1][1] 0.023244 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.012515 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01631 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025366 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 301 1 MG MG . C 3 CL A 1 302 1 CL CL . D 4 SAM A 1 303 1 SAM SSS . E 5 DNC A 1 304 1 DNC DNC . F 6 HOH A 1 401 242 HOH HOH . F 6 HOH A 2 402 216 HOH HOH . F 6 HOH A 3 403 231 HOH HOH . F 6 HOH A 4 404 200 HOH HOH . F 6 HOH A 5 405 83 HOH HOH . F 6 HOH A 6 406 226 HOH HOH . F 6 HOH A 7 407 127 HOH HOH . F 6 HOH A 8 408 183 HOH HOH . F 6 HOH A 9 409 152 HOH HOH . F 6 HOH A 10 410 61 HOH HOH . F 6 HOH A 11 411 79 HOH HOH . F 6 HOH A 12 412 125 HOH HOH . F 6 HOH A 13 413 51 HOH HOH . F 6 HOH A 14 414 11 HOH HOH . F 6 HOH A 15 415 98 HOH HOH . F 6 HOH A 16 416 68 HOH HOH . F 6 HOH A 17 417 211 HOH HOH . F 6 HOH A 18 418 131 HOH HOH . F 6 HOH A 19 419 196 HOH HOH . F 6 HOH A 20 420 144 HOH HOH . F 6 HOH A 21 421 249 HOH HOH . F 6 HOH A 22 422 64 HOH HOH . F 6 HOH A 23 423 175 HOH HOH . F 6 HOH A 24 424 230 HOH HOH . F 6 HOH A 25 425 190 HOH HOH . F 6 HOH A 26 426 187 HOH HOH . F 6 HOH A 27 427 44 HOH HOH . F 6 HOH A 28 428 207 HOH HOH . F 6 HOH A 29 429 158 HOH HOH . F 6 HOH A 30 430 8 HOH HOH . F 6 HOH A 31 431 199 HOH HOH . F 6 HOH A 32 432 160 HOH HOH . F 6 HOH A 33 433 224 HOH HOH . F 6 HOH A 34 434 84 HOH HOH . F 6 HOH A 35 435 134 HOH HOH . F 6 HOH A 36 436 74 HOH HOH . F 6 HOH A 37 437 90 HOH HOH . F 6 HOH A 38 438 213 HOH HOH . F 6 HOH A 39 439 124 HOH HOH . F 6 HOH A 40 440 67 HOH HOH . F 6 HOH A 41 441 36 HOH HOH . F 6 HOH A 42 442 118 HOH HOH . F 6 HOH A 43 443 43 HOH HOH . F 6 HOH A 44 444 40 HOH HOH . F 6 HOH A 45 445 2 HOH HOH . F 6 HOH A 46 446 192 HOH HOH . F 6 HOH A 47 447 202 HOH HOH . F 6 HOH A 48 448 120 HOH HOH . F 6 HOH A 49 449 204 HOH HOH . F 6 HOH A 50 450 62 HOH HOH . F 6 HOH A 51 451 180 HOH HOH . F 6 HOH A 52 452 232 HOH HOH . F 6 HOH A 53 453 206 HOH HOH . F 6 HOH A 54 454 136 HOH HOH . F 6 HOH A 55 455 185 HOH HOH . F 6 HOH A 56 456 4 HOH HOH . F 6 HOH A 57 457 1 HOH HOH . F 6 HOH A 58 458 52 HOH HOH . F 6 HOH A 59 459 161 HOH HOH . F 6 HOH A 60 460 35 HOH HOH . F 6 HOH A 61 461 54 HOH HOH . F 6 HOH A 62 462 82 HOH HOH . F 6 HOH A 63 463 106 HOH HOH . F 6 HOH A 64 464 205 HOH HOH . F 6 HOH A 65 465 32 HOH HOH . F 6 HOH A 66 466 20 HOH HOH . F 6 HOH A 67 467 188 HOH HOH . F 6 HOH A 68 468 28 HOH HOH . F 6 HOH A 69 469 181 HOH HOH . F 6 HOH A 70 470 9 HOH HOH . F 6 HOH A 71 471 21 HOH HOH . F 6 HOH A 72 472 38 HOH HOH . F 6 HOH A 73 473 17 HOH HOH . F 6 HOH A 74 474 112 HOH HOH . F 6 HOH A 75 475 108 HOH HOH . F 6 HOH A 76 476 92 HOH HOH . F 6 HOH A 77 477 33 HOH HOH . F 6 HOH A 78 478 176 HOH HOH . F 6 HOH A 79 479 178 HOH HOH . F 6 HOH A 80 480 57 HOH HOH . F 6 HOH A 81 481 96 HOH HOH . F 6 HOH A 82 482 182 HOH HOH . F 6 HOH A 83 483 71 HOH HOH . F 6 HOH A 84 484 23 HOH HOH . F 6 HOH A 85 485 50 HOH HOH . F 6 HOH A 86 486 29 HOH HOH . F 6 HOH A 87 487 132 HOH HOH . F 6 HOH A 88 488 25 HOH HOH . F 6 HOH A 89 489 41 HOH HOH . F 6 HOH A 90 490 163 HOH HOH . F 6 HOH A 91 491 6 HOH HOH . F 6 HOH A 92 492 147 HOH HOH . F 6 HOH A 93 493 14 HOH HOH . F 6 HOH A 94 494 130 HOH HOH . F 6 HOH A 95 495 31 HOH HOH . F 6 HOH A 96 496 5 HOH HOH . F 6 HOH A 97 497 60 HOH HOH . F 6 HOH A 98 498 47 HOH HOH . F 6 HOH A 99 499 150 HOH HOH . F 6 HOH A 100 500 103 HOH HOH . F 6 HOH A 101 501 122 HOH HOH . F 6 HOH A 102 502 45 HOH HOH . F 6 HOH A 103 503 22 HOH HOH . F 6 HOH A 104 504 80 HOH HOH . F 6 HOH A 105 505 48 HOH HOH . F 6 HOH A 106 506 26 HOH HOH . F 6 HOH A 107 507 156 HOH HOH . F 6 HOH A 108 508 30 HOH HOH . F 6 HOH A 109 509 193 HOH HOH . F 6 HOH A 110 510 101 HOH HOH . F 6 HOH A 111 511 154 HOH HOH . F 6 HOH A 112 512 13 HOH HOH . F 6 HOH A 113 513 3 HOH HOH . F 6 HOH A 114 514 169 HOH HOH . F 6 HOH A 115 515 24 HOH HOH . F 6 HOH A 116 516 159 HOH HOH . F 6 HOH A 117 517 76 HOH HOH . F 6 HOH A 118 518 94 HOH HOH . F 6 HOH A 119 519 184 HOH HOH . F 6 HOH A 120 520 239 HOH HOH . F 6 HOH A 121 521 99 HOH HOH . F 6 HOH A 122 522 39 HOH HOH . F 6 HOH A 123 523 133 HOH HOH . F 6 HOH A 124 524 149 HOH HOH . F 6 HOH A 125 525 70 HOH HOH . F 6 HOH A 126 526 63 HOH HOH . F 6 HOH A 127 527 155 HOH HOH . F 6 HOH A 128 528 166 HOH HOH . F 6 HOH A 129 529 153 HOH HOH . F 6 HOH A 130 530 85 HOH HOH . F 6 HOH A 131 531 148 HOH HOH . F 6 HOH A 132 532 121 HOH HOH . F 6 HOH A 133 533 46 HOH HOH . F 6 HOH A 134 534 123 HOH HOH . F 6 HOH A 135 535 37 HOH HOH . F 6 HOH A 136 536 128 HOH HOH . F 6 HOH A 137 537 151 HOH HOH . F 6 HOH A 138 538 170 HOH HOH . F 6 HOH A 139 539 97 HOH HOH . F 6 HOH A 140 540 198 HOH HOH . F 6 HOH A 141 541 7 HOH HOH . F 6 HOH A 142 542 59 HOH HOH . F 6 HOH A 143 543 34 HOH HOH . F 6 HOH A 144 544 179 HOH HOH . F 6 HOH A 145 545 164 HOH HOH . F 6 HOH A 146 546 105 HOH HOH . F 6 HOH A 147 547 16 HOH HOH . F 6 HOH A 148 548 27 HOH HOH . F 6 HOH A 149 549 195 HOH HOH . F 6 HOH A 150 550 146 HOH HOH . F 6 HOH A 151 551 145 HOH HOH . F 6 HOH A 152 552 19 HOH HOH . F 6 HOH A 153 553 78 HOH HOH . F 6 HOH A 154 554 18 HOH HOH . F 6 HOH A 155 555 86 HOH HOH . F 6 HOH A 156 556 167 HOH HOH . F 6 HOH A 157 557 117 HOH HOH . F 6 HOH A 158 558 75 HOH HOH . F 6 HOH A 159 559 81 HOH HOH . F 6 HOH A 160 560 10 HOH HOH . F 6 HOH A 161 561 157 HOH HOH . F 6 HOH A 162 562 12 HOH HOH . F 6 HOH A 163 563 102 HOH HOH . F 6 HOH A 164 564 107 HOH HOH . F 6 HOH A 165 565 42 HOH HOH . F 6 HOH A 166 566 197 HOH HOH . F 6 HOH A 167 567 69 HOH HOH . F 6 HOH A 168 568 114 HOH HOH . F 6 HOH A 169 569 168 HOH HOH . F 6 HOH A 170 570 66 HOH HOH . F 6 HOH A 171 571 55 HOH HOH . F 6 HOH A 172 572 53 HOH HOH . F 6 HOH A 173 573 93 HOH HOH . F 6 HOH A 174 574 214 HOH HOH . F 6 HOH A 175 575 189 HOH HOH . F 6 HOH A 176 576 174 HOH HOH . F 6 HOH A 177 577 210 HOH HOH . F 6 HOH A 178 578 212 HOH HOH . F 6 HOH A 179 579 208 HOH HOH . F 6 HOH A 180 580 177 HOH HOH . F 6 HOH A 181 581 88 HOH HOH . F 6 HOH A 182 582 225 HOH HOH . F 6 HOH A 183 583 165 HOH HOH . F 6 HOH A 184 584 115 HOH HOH . F 6 HOH A 185 585 138 HOH HOH . F 6 HOH A 186 586 233 HOH HOH . F 6 HOH A 187 587 110 HOH HOH . F 6 HOH A 188 588 162 HOH HOH . F 6 HOH A 189 589 173 HOH HOH . F 6 HOH A 190 590 116 HOH HOH . F 6 HOH A 191 591 223 HOH HOH . F 6 HOH A 192 592 218 HOH HOH . F 6 HOH A 193 593 229 HOH HOH . F 6 HOH A 194 594 137 HOH HOH . F 6 HOH A 195 595 172 HOH HOH . F 6 HOH A 196 596 227 HOH HOH . F 6 HOH A 197 597 111 HOH HOH . F 6 HOH A 198 598 203 HOH HOH . F 6 HOH A 199 599 250 HOH HOH . F 6 HOH A 200 600 191 HOH HOH . F 6 HOH A 201 601 119 HOH HOH . F 6 HOH A 202 602 240 HOH HOH . F 6 HOH A 203 603 219 HOH HOH . F 6 HOH A 204 604 95 HOH HOH . F 6 HOH A 205 605 141 HOH HOH . F 6 HOH A 206 606 243 HOH HOH . F 6 HOH A 207 607 73 HOH HOH . F 6 HOH A 208 608 194 HOH HOH . F 6 HOH A 209 609 171 HOH HOH . F 6 HOH A 210 610 217 HOH HOH . F 6 HOH A 211 611 49 HOH HOH . F 6 HOH A 212 612 65 HOH HOH . F 6 HOH A 213 613 241 HOH HOH . F 6 HOH A 214 614 58 HOH HOH . F 6 HOH A 215 615 186 HOH HOH . F 6 HOH A 216 616 126 HOH HOH . F 6 HOH A 217 617 15 HOH HOH . F 6 HOH A 218 618 209 HOH HOH . F 6 HOH A 219 619 244 HOH HOH . F 6 HOH A 220 620 142 HOH HOH . F 6 HOH A 221 621 56 HOH HOH . F 6 HOH A 222 622 129 HOH HOH . F 6 HOH A 223 623 236 HOH HOH . F 6 HOH A 224 624 246 HOH HOH . F 6 HOH A 225 625 234 HOH HOH . F 6 HOH A 226 626 201 HOH HOH . F 6 HOH A 227 627 221 HOH HOH . F 6 HOH A 228 628 104 HOH HOH . F 6 HOH A 229 629 237 HOH HOH . F 6 HOH A 230 630 77 HOH HOH . F 6 HOH A 231 631 87 HOH HOH . F 6 HOH A 232 632 91 HOH HOH . F 6 HOH A 233 633 215 HOH HOH . F 6 HOH A 234 634 238 HOH HOH . F 6 HOH A 235 635 143 HOH HOH . F 6 HOH A 236 636 228 HOH HOH . F 6 HOH A 237 637 235 HOH HOH . F 6 HOH A 238 638 109 HOH HOH . F 6 HOH A 239 639 89 HOH HOH . F 6 HOH A 240 640 140 HOH HOH . F 6 HOH A 241 641 113 HOH HOH . F 6 HOH A 242 642 248 HOH HOH . F 6 HOH A 243 643 72 HOH HOH . F 6 HOH A 244 644 220 HOH HOH . F 6 HOH A 245 645 247 HOH HOH . F 6 HOH A 246 646 245 HOH HOH . F 6 HOH A 247 647 135 HOH HOH . F 6 HOH A 248 648 222 HOH HOH . F 6 HOH A 249 649 139 HOH HOH . F 6 HOH A 250 650 100 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DNC . . . E 5 9.061 -4.68 16.434 1 8.21 ? C1 DNC 304 A 1 HETATM 2 O O1 DNC . . . E 5 9.576 -5.16 15.266 1 10.69 ? O1 DNC 304 A 1 HETATM 3 C C2 DNC . . . E 5 8.912 -3.193 16.517 1 10.41 ? C2 DNC 304 A 1 HETATM 4 O O2 DNC . . . E 5 9.236 -2.539 15.435 1 9.1 ? O2 DNC 304 A 1 HETATM 5 C C3 DNC . . . E 5 8.362 -2.608 17.702 1 11.14 ? C3 DNC 304 A 1 HETATM 6 N N1 DNC . . . E 5 8.196 -1.229 17.899 1 11.41 ? N1 DNC 304 A 1 HETATM 7 O O3 DNC . . . E 5 8.638 -0.459 17.065 1 11.57 ? O3 DNC 304 A 1 HETATM 8 O O4 DNC . . . E 5 7.643 -0.881 18.931 1 15.32 ? O4 DNC 304 A 1 HETATM 9 C C4 DNC . . . E 5 8.012 -3.442 18.724 1 9.42 ? C4 DNC 304 A 1 HETATM 10 C C5 DNC . . . E 5 8.166 -4.824 18.643 1 9.81 ? C5 DNC 304 A 1 HETATM 11 N N2 DNC . . . E 5 7.705 -5.655 19.665 1 13.46 ? N2 DNC 304 A 1 HETATM 12 O O5 DNC . . . E 5 7.322 -5.182 20.73 1 17.81 ? O5 DNC 304 A 1 HETATM 13 O O6 DNC . . . E 5 7.594 -6.88 19.441 1 13.04 ? O6 DNC 304 A 1 HETATM 14 C C6 DNC . . . E 5 8.66 -5.443 17.491 1 8.88 ? C6 DNC 304 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 14 #