data_5LTH # _model_server_result.job_id qScQrvXakZfbecnqD11mNQ _model_server_result.datetime_utc '2024-11-16 14:33:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5lth # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 5LTH # _exptl.entry_id 5LTH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5LTH _cell.length_a 80.38 _cell.length_b 80.38 _cell.length_c 144.79 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LTH _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 194 A HIS 194 1_555 B FE HEM . A HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc2 B FE HEM . A HEM 401 1_555 F O HOH . A HOH 705 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.527 ? metalc ? metalc3 D O2 PEG . A PEG 403 1_555 E NA NA . A NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.825 ? metalc ? metalc4 D O4 PEG . A PEG 403 1_555 E NA NA . A NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.82 ? metalc ? metalc5 D O2 PEG . A PEG 403 1_555 E NA NA . A NA 404 7_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.828 ? metalc ? metalc6 D O4 PEG . A PEG 403 1_555 E NA NA . A NA 404 7_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.829 ? metalc ? metalc7 E NA NA . A NA 404 1_555 F O HOH . A HOH 649 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.125 ? metalc ? metalc8 E NA NA . A NA 404 1_555 F O HOH . A HOH 649 7_556 ? ? ? ? ? ? ? ? ? ? ? ? 3.129 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5LTH _atom_sites.fract_transf_matrix[1][1] 0.012441 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012441 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006907 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 401 438 HEM HEM . C 3 DMN A 1 402 1 DMN DMA . D 4 PEG A 1 403 1 PEG PEG . E 5 NA A 1 404 2 NA NA . F 6 HOH A 1 501 607 HOH HOH . F 6 HOH A 2 502 511 HOH HOH . F 6 HOH A 3 503 575 HOH HOH . F 6 HOH A 4 504 578 HOH HOH . F 6 HOH A 5 505 475 HOH HOH . F 6 HOH A 6 506 529 HOH HOH . F 6 HOH A 7 507 557 HOH HOH . F 6 HOH A 8 508 590 HOH HOH . F 6 HOH A 9 509 476 HOH HOH . F 6 HOH A 10 510 441 HOH HOH . F 6 HOH A 11 511 572 HOH HOH . F 6 HOH A 12 512 448 HOH HOH . F 6 HOH A 13 513 466 HOH HOH . F 6 HOH A 14 514 564 HOH HOH . F 6 HOH A 15 515 547 HOH HOH . F 6 HOH A 16 516 561 HOH HOH . F 6 HOH A 17 517 545 HOH HOH . F 6 HOH A 18 518 539 HOH HOH . F 6 HOH A 19 519 481 HOH HOH . F 6 HOH A 20 520 574 HOH HOH . F 6 HOH A 21 521 410 HOH HOH . F 6 HOH A 22 522 528 HOH HOH . F 6 HOH A 23 523 493 HOH HOH . F 6 HOH A 24 524 423 HOH HOH . F 6 HOH A 25 525 579 HOH HOH . F 6 HOH A 26 526 412 HOH HOH . F 6 HOH A 27 527 345 HOH HOH . F 6 HOH A 28 528 540 HOH HOH . F 6 HOH A 29 529 431 HOH HOH . F 6 HOH A 30 530 436 HOH HOH . F 6 HOH A 31 531 378 HOH HOH . F 6 HOH A 32 532 567 HOH HOH . F 6 HOH A 33 533 454 HOH HOH . F 6 HOH A 34 534 467 HOH HOH . F 6 HOH A 35 535 542 HOH HOH . F 6 HOH A 36 536 569 HOH HOH . F 6 HOH A 37 537 366 HOH HOH . F 6 HOH A 38 538 367 HOH HOH . F 6 HOH A 39 539 535 HOH HOH . F 6 HOH A 40 540 558 HOH HOH . F 6 HOH A 41 541 340 HOH HOH . F 6 HOH A 42 542 469 HOH HOH . F 6 HOH A 43 543 509 HOH HOH . F 6 HOH A 44 544 474 HOH HOH . F 6 HOH A 45 545 604 HOH HOH . F 6 HOH A 46 546 417 HOH HOH . F 6 HOH A 47 547 551 HOH HOH . F 6 HOH A 48 548 581 HOH HOH . F 6 HOH A 49 549 385 HOH HOH . F 6 HOH A 50 550 596 HOH HOH . F 6 HOH A 51 551 568 HOH HOH . F 6 HOH A 52 552 350 HOH HOH . F 6 HOH A 53 553 439 HOH HOH . F 6 HOH A 54 554 411 HOH HOH . F 6 HOH A 55 555 555 HOH HOH . F 6 HOH A 56 556 526 HOH HOH . F 6 HOH A 57 557 533 HOH HOH . F 6 HOH A 58 558 461 HOH HOH . F 6 HOH A 59 559 599 HOH HOH . F 6 HOH A 60 560 424 HOH HOH . F 6 HOH A 61 561 403 HOH HOH . F 6 HOH A 62 562 480 HOH HOH . F 6 HOH A 63 563 361 HOH HOH . F 6 HOH A 64 564 534 HOH HOH . F 6 HOH A 65 565 438 HOH HOH . F 6 HOH A 66 566 349 HOH HOH . F 6 HOH A 67 567 556 HOH HOH . F 6 HOH A 68 568 395 HOH HOH . F 6 HOH A 69 569 532 HOH HOH . F 6 HOH A 70 570 434 HOH HOH . F 6 HOH A 71 571 507 HOH HOH . F 6 HOH A 72 572 387 HOH HOH . F 6 HOH A 73 573 530 HOH HOH . F 6 HOH A 74 574 598 HOH HOH . F 6 HOH A 75 575 563 HOH HOH . F 6 HOH A 76 576 369 HOH HOH . F 6 HOH A 77 577 477 HOH HOH . F 6 HOH A 78 578 373 HOH HOH . F 6 HOH A 79 579 430 HOH HOH . F 6 HOH A 80 580 499 HOH HOH . F 6 HOH A 81 581 405 HOH HOH . F 6 HOH A 82 582 489 HOH HOH . F 6 HOH A 83 583 498 HOH HOH . F 6 HOH A 84 584 389 HOH HOH . F 6 HOH A 85 585 408 HOH HOH . F 6 HOH A 86 586 432 HOH HOH . F 6 HOH A 87 587 343 HOH HOH . F 6 HOH A 88 588 571 HOH HOH . F 6 HOH A 89 589 386 HOH HOH . F 6 HOH A 90 590 494 HOH HOH . F 6 HOH A 91 591 522 HOH HOH . F 6 HOH A 92 592 422 HOH HOH . F 6 HOH A 93 593 398 HOH HOH . F 6 HOH A 94 594 443 HOH HOH . F 6 HOH A 95 595 390 HOH HOH . F 6 HOH A 96 596 452 HOH HOH . F 6 HOH A 97 597 433 HOH HOH . F 6 HOH A 98 598 370 HOH HOH . F 6 HOH A 99 599 468 HOH HOH . F 6 HOH A 100 600 415 HOH HOH . F 6 HOH A 101 601 570 HOH HOH . F 6 HOH A 102 602 420 HOH HOH . F 6 HOH A 103 603 426 HOH HOH . F 6 HOH A 104 604 592 HOH HOH . F 6 HOH A 105 605 368 HOH HOH . F 6 HOH A 106 606 478 HOH HOH . F 6 HOH A 107 607 580 HOH HOH . F 6 HOH A 108 608 388 HOH HOH . F 6 HOH A 109 609 360 HOH HOH . F 6 HOH A 110 610 365 HOH HOH . F 6 HOH A 111 611 374 HOH HOH . F 6 HOH A 112 612 376 HOH HOH . F 6 HOH A 113 613 589 HOH HOH . F 6 HOH A 114 614 442 HOH HOH . F 6 HOH A 115 615 524 HOH HOH . F 6 HOH A 116 616 357 HOH HOH . F 6 HOH A 117 617 485 HOH HOH . F 6 HOH A 118 618 407 HOH HOH . F 6 HOH A 119 619 566 HOH HOH . F 6 HOH A 120 620 355 HOH HOH . F 6 HOH A 121 621 573 HOH HOH . F 6 HOH A 122 622 382 HOH HOH . F 6 HOH A 123 623 379 HOH HOH . F 6 HOH A 124 624 347 HOH HOH . F 6 HOH A 125 625 414 HOH HOH . F 6 HOH A 126 626 505 HOH HOH . F 6 HOH A 127 627 482 HOH HOH . F 6 HOH A 128 628 496 HOH HOH . F 6 HOH A 129 629 463 HOH HOH . F 6 HOH A 130 630 586 HOH HOH . F 6 HOH A 131 631 456 HOH HOH . F 6 HOH A 132 632 354 HOH HOH . F 6 HOH A 133 633 362 HOH HOH . F 6 HOH A 134 634 392 HOH HOH . F 6 HOH A 135 635 462 HOH HOH . F 6 HOH A 136 636 384 HOH HOH . F 6 HOH A 137 637 418 HOH HOH . F 6 HOH A 138 638 344 HOH HOH . F 6 HOH A 139 639 371 HOH HOH . F 6 HOH A 140 640 488 HOH HOH . F 6 HOH A 141 641 341 HOH HOH . F 6 HOH A 142 642 455 HOH HOH . F 6 HOH A 143 643 450 HOH HOH . F 6 HOH A 144 644 576 HOH HOH . F 6 HOH A 145 645 401 HOH HOH . F 6 HOH A 146 646 444 HOH HOH . F 6 HOH A 147 647 372 HOH HOH . F 6 HOH A 148 648 399 HOH HOH . F 6 HOH A 149 649 606 HOH HOH . F 6 HOH A 150 650 358 HOH HOH . F 6 HOH A 151 651 421 HOH HOH . F 6 HOH A 152 652 429 HOH HOH . F 6 HOH A 153 653 428 HOH HOH . F 6 HOH A 154 654 400 HOH HOH . F 6 HOH A 155 655 348 HOH HOH . F 6 HOH A 156 656 425 HOH HOH . F 6 HOH A 157 657 391 HOH HOH . F 6 HOH A 158 658 396 HOH HOH . F 6 HOH A 159 659 445 HOH HOH . F 6 HOH A 160 660 585 HOH HOH . F 6 HOH A 161 661 470 HOH HOH . F 6 HOH A 162 662 393 HOH HOH . F 6 HOH A 163 663 554 HOH HOH . F 6 HOH A 164 664 447 HOH HOH . F 6 HOH A 165 665 492 HOH HOH . F 6 HOH A 166 666 546 HOH HOH . F 6 HOH A 167 667 560 HOH HOH . F 6 HOH A 168 668 435 HOH HOH . F 6 HOH A 169 669 550 HOH HOH . F 6 HOH A 170 670 565 HOH HOH . F 6 HOH A 171 671 465 HOH HOH . F 6 HOH A 172 672 457 HOH HOH . F 6 HOH A 173 673 346 HOH HOH . F 6 HOH A 174 674 483 HOH HOH . F 6 HOH A 175 675 577 HOH HOH . F 6 HOH A 176 676 409 HOH HOH . F 6 HOH A 177 677 353 HOH HOH . F 6 HOH A 178 678 404 HOH HOH . F 6 HOH A 179 679 502 HOH HOH . F 6 HOH A 180 680 363 HOH HOH . F 6 HOH A 181 681 440 HOH HOH . F 6 HOH A 182 682 473 HOH HOH . F 6 HOH A 183 683 351 HOH HOH . F 6 HOH A 184 684 356 HOH HOH . F 6 HOH A 185 685 504 HOH HOH . F 6 HOH A 186 686 541 HOH HOH . F 6 HOH A 187 687 584 HOH HOH . F 6 HOH A 188 688 583 HOH HOH . F 6 HOH A 189 689 531 HOH HOH . F 6 HOH A 190 690 460 HOH HOH . F 6 HOH A 191 691 416 HOH HOH . F 6 HOH A 192 692 375 HOH HOH . F 6 HOH A 193 693 446 HOH HOH . F 6 HOH A 194 694 342 HOH HOH . F 6 HOH A 195 695 413 HOH HOH . F 6 HOH A 196 696 437 HOH HOH . F 6 HOH A 197 697 402 HOH HOH . F 6 HOH A 198 698 559 HOH HOH . F 6 HOH A 199 699 453 HOH HOH . F 6 HOH A 200 700 490 HOH HOH . F 6 HOH A 201 701 383 HOH HOH . F 6 HOH A 202 702 464 HOH HOH . F 6 HOH A 203 703 359 HOH HOH . F 6 HOH A 204 704 449 HOH HOH . F 6 HOH A 205 705 553 HOH HOH . F 6 HOH A 206 706 364 HOH HOH . F 6 HOH A 207 707 587 HOH HOH . F 6 HOH A 208 708 562 HOH HOH . F 6 HOH A 209 709 582 HOH HOH . F 6 HOH A 210 710 536 HOH HOH . F 6 HOH A 211 711 427 HOH HOH . F 6 HOH A 212 712 397 HOH HOH . F 6 HOH A 213 713 394 HOH HOH . F 6 HOH A 214 714 503 HOH HOH . F 6 HOH A 215 715 591 HOH HOH . F 6 HOH A 216 716 458 HOH HOH . F 6 HOH A 217 717 451 HOH HOH . F 6 HOH A 218 718 527 HOH HOH . F 6 HOH A 219 719 380 HOH HOH . F 6 HOH A 220 720 515 HOH HOH . F 6 HOH A 221 721 597 HOH HOH . F 6 HOH A 222 722 544 HOH HOH . F 6 HOH A 223 723 352 HOH HOH . F 6 HOH A 224 724 525 HOH HOH . F 6 HOH A 225 725 508 HOH HOH . F 6 HOH A 226 726 514 HOH HOH . F 6 HOH A 227 727 486 HOH HOH . F 6 HOH A 228 728 487 HOH HOH . F 6 HOH A 229 729 406 HOH HOH . F 6 HOH A 230 730 588 HOH HOH . F 6 HOH A 231 731 520 HOH HOH . F 6 HOH A 232 732 484 HOH HOH . F 6 HOH A 233 733 595 HOH HOH . F 6 HOH A 234 734 377 HOH HOH . F 6 HOH A 235 735 605 HOH HOH . F 6 HOH A 236 736 491 HOH HOH . F 6 HOH A 237 737 601 HOH HOH . F 6 HOH A 238 738 500 HOH HOH . F 6 HOH A 239 739 518 HOH HOH . F 6 HOH A 240 740 593 HOH HOH . F 6 HOH A 241 741 552 HOH HOH . F 6 HOH A 242 742 602 HOH HOH . F 6 HOH A 243 743 523 HOH HOH . F 6 HOH A 244 744 512 HOH HOH . F 6 HOH A 245 745 495 HOH HOH . F 6 HOH A 246 746 549 HOH HOH . F 6 HOH A 247 747 548 HOH HOH . F 6 HOH A 248 748 479 HOH HOH . F 6 HOH A 249 749 543 HOH HOH . F 6 HOH A 250 750 538 HOH HOH . F 6 HOH A 251 751 419 HOH HOH . F 6 HOH A 252 752 471 HOH HOH . F 6 HOH A 253 753 521 HOH HOH . F 6 HOH A 254 754 516 HOH HOH . F 6 HOH A 255 755 501 HOH HOH . F 6 HOH A 256 756 537 HOH HOH . F 6 HOH A 257 757 517 HOH HOH . F 6 HOH A 258 758 459 HOH HOH . F 6 HOH A 259 759 510 HOH HOH . F 6 HOH A 260 760 381 HOH HOH . F 6 HOH A 261 761 472 HOH HOH . F 6 HOH A 262 762 519 HOH HOH . F 6 HOH A 263 763 513 HOH HOH . F 6 HOH A 264 764 506 HOH HOH . F 6 HOH A 265 765 600 HOH HOH . F 6 HOH A 266 766 594 HOH HOH . F 6 HOH A 267 767 497 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 5 _atom_site.Cartn_x 31.421 _atom_site.Cartn_y 31.421 _atom_site.Cartn_z 72.39 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 26.64 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 404 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 75 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 1 #