data_5LTW # _model_server_result.job_id sQKNw8bZJQaKNPB_CnCESw _model_server_result.datetime_utc '2024-11-26 05:50:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ltw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":501}' # _entry.id 5LTW # _exptl.entry_id 5LTW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5LTW _cell.length_a 125.06 _cell.length_b 341.29 _cell.length_c 144.55 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LTW _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 PISA tetrameric 4 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,M,N,O 1 1 E,F,G,H,P,Q,R 2 1 I,J,K,L,S,T,U 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 M N N ? 3 N N N ? 3 P N N ? 3 Q N N ? 3 S N N ? 3 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C ALA 15 C ALA 15 1_555 C N SEP 16 C SEP 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale2 C C SEP 16 C SEP 16 1_555 C N ALA 17 C ALA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale3 D C ALA 15 D ALA 15 1_555 D N SEP 16 D SEP 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale4 D C SEP 16 D SEP 16 1_555 D N ALA 17 D ALA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.357 ? covale ? covale5 G C ALA 15 G ALA 15 1_555 G N SEP 16 G SEP 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale6 G C SEP 16 G SEP 16 1_555 G N ALA 17 G ALA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale7 H C ALA 15 H ALA 15 1_555 H N SEP 16 H SEP 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale8 H C SEP 16 H SEP 16 1_555 H N ALA 17 H ALA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale9 K C ALA 15 K ALA 15 1_555 K N SEP 16 K SEP 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale10 K C SEP 16 K SEP 16 1_555 K N ALA 17 K ALA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale11 L C ALA 15 L ALA 15 1_555 L N SEP 16 L SEP 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale12 L C SEP 16 L SEP 16 1_555 L N ALA 17 L ALA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? metalc ? metalc1 L O PRO 138 L PRO 138 1_555 U NI NI . L NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 350 n n C C2 TRS sing 351 n n C C3 TRS sing 352 n n C N TRS sing 353 n n C1 O1 TRS sing 354 n n C1 H11 TRS sing 355 n n C1 H12 TRS sing 356 n n C2 O2 TRS sing 357 n n C2 H21 TRS sing 358 n n C2 H22 TRS sing 359 n n C3 O3 TRS sing 360 n n C3 H31 TRS sing 361 n n C3 H32 TRS sing 362 n n N HN1 TRS sing 363 n n N HN2 TRS sing 364 n n N HN3 TRS sing 365 n n O1 HO1 TRS sing 366 n n O2 HO2 TRS sing 367 n n O3 HO3 TRS sing 368 n n # _atom_sites.entry_id 5LTW _atom_sites.fract_transf_matrix[1][1] 0.007996 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00293 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006918 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 3 TRS A 1 501 501 TRS TRS . N 3 TRS B 1 501 501 TRS TRS . O 4 NI D 1 201 3 NI NI . P 3 TRS E 1 501 501 TRS TRS . Q 3 TRS F 1 501 501 TRS TRS . R 4 NI H 1 201 1 NI NI . S 3 TRS I 1 501 501 TRS TRS . T 3 TRS J 1 501 501 TRS TRS . U 4 NI L 1 201 2 NI NI . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . S 3 43.077 7.311 -8.152 1 45.71 ? C TRS 501 I 1 HETATM 2 C C1 TRS . . . S 3 43.537 7.526 -9.594 1 44.75 ? C1 TRS 501 I 1 HETATM 3 C C2 TRS . . . S 3 43.59 8.419 -7.211 1 45.39 ? C2 TRS 501 I 1 HETATM 4 C C3 TRS . . . S 3 41.554 7.187 -8.086 1 45.1 ? C3 TRS 501 I 1 HETATM 5 N N TRS . . . S 3 43.649 6.007 -7.682 1 48.14 ? N TRS 501 I 1 HETATM 6 O O1 TRS . . . S 3 44.949 7.468 -9.723 1 45.73 ? O1 TRS 501 I 1 HETATM 7 O O2 TRS . . . S 3 43.264 9.729 -7.65 1 43.43 ? O2 TRS 501 I 1 HETATM 8 O O3 TRS . . . S 3 41.091 7.414 -6.77 1 45.6 ? O3 TRS 501 I 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 239 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 8 #