data_5LU4 # _model_server_result.job_id dovj8B09riAqN58zZsOniQ _model_server_result.datetime_utc '2024-11-27 18:16:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5lu4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":902}' # _entry.id 5LU4 # _exptl.entry_id 5LU4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5LU4 _cell.length_a 74.159 _cell.length_b 126.515 _cell.length_c 218.998 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LU4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,J 1 1 B,G,H,I,K 1 2 B,G,H,I,K 2 1 A,C,D,E,F,J 2 3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_995 -x+9/2,-y+4,z+1/2 -1 0 0 0 -1 0 0 0 1 333.7155 506.06 109.499 3 'crystal symmetry operation' 2_994 -x+9/2,-y+4,z-1/2 -1 0 0 0 -1 0 0 0 1 333.7155 506.06 -109.499 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N ? 3 H N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 324 A GLU 324 1_555 D MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc2 A OE2 GLU 324 A GLU 324 1_555 D MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.584 ? metalc ? metalc3 A OE1 GLN 336 A GLN 336 1_555 D MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc4 A OD2 ASP 622 A ASP 622 1_555 F MG MG . A MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? metalc ? metalc5 A OE2 GLU 748 A GLU 748 1_555 F MG MG . A MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc6 A OD2 ASP 772 A ASP 772 1_555 F MG MG . A MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc7 C O2B ADP . A ADP 901 1_555 D MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc8 C O3A ADP . A ADP 901 1_555 D MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc9 C O5' ADP . A ADP 901 1_555 D MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.962 ? metalc ? metalc10 E OXT PYR . A PYR 903 1_555 F MG MG . A MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.779 ? metalc ? metalc11 B OE1 GLU 324 B GLU 324 1_555 H MG MG . B MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? metalc ? metalc12 B OE2 GLU 324 B GLU 324 1_555 H MG MG . B MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.921 ? metalc ? metalc13 B OE1 GLN 336 B GLN 336 1_555 H MG MG . B MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc14 B OD2 ASP 622 B ASP 622 1_555 I MG MG . B MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? metalc ? metalc15 B OE2 GLU 748 B GLU 748 1_555 I MG MG . B MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc16 B OD2 ASP 772 B ASP 772 1_555 I MG MG . B MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.876 ? metalc ? metalc17 G O1B ADP . B ADP 901 1_555 H MG MG . B MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.628 ? metalc ? metalc18 G O2B ADP . B ADP 901 1_555 H MG MG . B MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.9 ? metalc ? metalc19 G O3A ADP . B ADP 901 1_555 H MG MG . B MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.902 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5LU4 _atom_sites.fract_transf_matrix[1][1] 0.013485 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007904 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004566 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ADP A 1 901 873 ADP ADP . D 3 MG A 1 902 874 MG MG . E 4 PYR A 1 903 875 PYR PYR . F 3 MG A 1 904 876 MG MG . G 2 ADP B 1 901 873 ADP ADP . H 3 MG B 1 902 874 MG MG . I 3 MG B 1 903 875 MG MG . J 5 HOH A 1 1001 878 HOH HOH . K 5 HOH B 1 1001 876 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 174.78 _atom_site.Cartn_y 270.65 _atom_site.Cartn_z 213.542 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 40.77 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 902 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 36 _model_server_stats.parse_time_ms 55 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #