data_5LU8 # _model_server_result.job_id DrBWZo7TKVsF4e-eo5ulPQ _model_server_result.datetime_utc '2024-11-16 15:54:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5lu8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 5LU8 # _exptl.entry_id 5LU8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5LU8 _cell.length_a 64.32 _cell.length_b 64.32 _cell.length_c 78.91 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LU8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 77 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 42' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ACE 1 C ACE 300 1_555 A N TYR 2 C TYR 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.37 ? covale ? covale2 A C ASP 5 C ASP 304 1_555 A C1 0QE 6 C 0QE 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? covale ? covale3 A C1 0QE 6 C 0QE 305 1_555 B SG CYS 164 A CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.621 ? covale ? covale4 B C THR 121 A THR 146 1_555 B N SNN 122 A SNN 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.377 ? covale ? covale5 B C SNN 122 A SNN 147 1_555 B N HIS 123 A HIS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.235 ? covale ? covale6 B C5 SNN 122 A SNN 147 1_555 B N HIS 123 A HIS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale7 B ND2 ASN 142 A ASN 167 1_555 E C1 NAG . A NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale8 B ND2 ASN 247 A ASN 272 1_555 F C1 NAG . A NAG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? metalc ? metalc1 B SG CYS 194 A CYS 219 1_555 G HG EMC . A EMC 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 393 n n S O2 SO4 doub 394 n n S O3 SO4 sing 395 n n S O4 SO4 sing 396 n n # _atom_sites.entry_id 5LU8 _atom_sites.fract_transf_matrix[1][1] 0.015547 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015547 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012673 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SO4 A 1 301 301 SO4 SO4 . D 3 SO4 A 1 302 302 SO4 SO4 . E 4 NAG A 1 303 303 NAG NAG . F 4 NAG A 1 304 304 NAG NAG . G 5 EMC A 1 305 305 EMC EMC . H 6 5KN A 1 306 306 5KN 5KN . I 7 HOH C 1 401 401 HOH HOH . J 7 HOH A 1 401 401 HOH HOH . J 7 HOH A 2 402 402 HOH HOH . J 7 HOH A 3 403 403 HOH HOH . J 7 HOH A 4 404 404 HOH HOH . J 7 HOH A 5 405 405 HOH HOH . J 7 HOH A 6 406 406 HOH HOH . J 7 HOH A 7 407 407 HOH HOH . J 7 HOH A 8 408 408 HOH HOH . J 7 HOH A 9 409 409 HOH HOH . J 7 HOH A 10 410 410 HOH HOH . J 7 HOH A 11 411 411 HOH HOH . J 7 HOH A 12 412 412 HOH HOH . J 7 HOH A 13 413 413 HOH HOH . J 7 HOH A 14 414 414 HOH HOH . J 7 HOH A 15 415 415 HOH HOH . J 7 HOH A 16 416 416 HOH HOH . J 7 HOH A 17 417 417 HOH HOH . J 7 HOH A 18 418 418 HOH HOH . J 7 HOH A 19 419 419 HOH HOH . J 7 HOH A 20 420 420 HOH HOH . J 7 HOH A 21 421 421 HOH HOH . J 7 HOH A 22 422 422 HOH HOH . J 7 HOH A 23 423 423 HOH HOH . J 7 HOH A 24 424 424 HOH HOH . J 7 HOH A 25 425 425 HOH HOH . J 7 HOH A 26 426 426 HOH HOH . J 7 HOH A 27 427 427 HOH HOH . J 7 HOH A 28 428 428 HOH HOH . J 7 HOH A 29 429 429 HOH HOH . J 7 HOH A 30 430 430 HOH HOH . J 7 HOH A 31 431 431 HOH HOH . J 7 HOH A 32 432 432 HOH HOH . J 7 HOH A 33 433 433 HOH HOH . J 7 HOH A 34 434 434 HOH HOH . J 7 HOH A 35 435 435 HOH HOH . J 7 HOH A 36 436 436 HOH HOH . J 7 HOH A 37 437 437 HOH HOH . J 7 HOH A 38 438 438 HOH HOH . J 7 HOH A 39 439 439 HOH HOH . J 7 HOH A 40 440 440 HOH HOH . J 7 HOH A 41 441 441 HOH HOH . J 7 HOH A 42 442 442 HOH HOH . J 7 HOH A 43 443 443 HOH HOH . J 7 HOH A 44 444 444 HOH HOH . J 7 HOH A 45 445 445 HOH HOH . J 7 HOH A 46 446 446 HOH HOH . J 7 HOH A 47 447 447 HOH HOH . J 7 HOH A 48 448 448 HOH HOH . J 7 HOH A 49 449 449 HOH HOH . J 7 HOH A 50 450 450 HOH HOH . J 7 HOH A 51 451 451 HOH HOH . J 7 HOH A 52 452 452 HOH HOH . J 7 HOH A 53 453 453 HOH HOH . J 7 HOH A 54 454 454 HOH HOH . J 7 HOH A 55 455 455 HOH HOH . J 7 HOH A 56 456 456 HOH HOH . J 7 HOH A 57 457 457 HOH HOH . J 7 HOH A 58 458 458 HOH HOH . J 7 HOH A 59 459 459 HOH HOH . J 7 HOH A 60 460 460 HOH HOH . J 7 HOH A 61 461 461 HOH HOH . J 7 HOH A 62 462 462 HOH HOH . J 7 HOH A 63 463 463 HOH HOH . J 7 HOH A 64 464 464 HOH HOH . J 7 HOH A 65 465 465 HOH HOH . J 7 HOH A 66 466 466 HOH HOH . J 7 HOH A 67 467 467 HOH HOH . J 7 HOH A 68 468 468 HOH HOH . J 7 HOH A 69 469 469 HOH HOH . J 7 HOH A 70 470 470 HOH HOH . J 7 HOH A 71 471 471 HOH HOH . J 7 HOH A 72 472 472 HOH HOH . J 7 HOH A 73 473 473 HOH HOH . J 7 HOH A 74 474 474 HOH HOH . J 7 HOH A 75 475 475 HOH HOH . J 7 HOH A 76 476 476 HOH HOH . J 7 HOH A 77 477 477 HOH HOH . J 7 HOH A 78 478 478 HOH HOH . J 7 HOH A 79 479 479 HOH HOH . J 7 HOH A 80 480 480 HOH HOH . J 7 HOH A 81 481 481 HOH HOH . J 7 HOH A 82 482 482 HOH HOH . J 7 HOH A 83 483 483 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . D 3 11.076 52.575 9.827 1 52.57 ? S SO4 302 A 1 HETATM 2 O O1 SO4 . . . D 3 11.438 53.28 8.57 1 50.46 ? O1 SO4 302 A 1 HETATM 3 O O2 SO4 . . . D 3 11.641 51.209 9.86 1 52.5 ? O2 SO4 302 A 1 HETATM 4 O O3 SO4 . . . D 3 9.6 52.474 9.932 1 52.07 ? O3 SO4 302 A 1 HETATM 5 O O4 SO4 . . . D 3 11.614 53.327 10.985 1 54.2 ? O4 SO4 302 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 5 #