data_5LU8 # _model_server_result.job_id 7MM8l9znr8quPuTksB3sZg _model_server_result.datetime_utc '2024-11-16 15:44:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5lu8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":304}' # _entry.id 5LU8 # _exptl.entry_id 5LU8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5LU8 _cell.length_a 64.32 _cell.length_b 64.32 _cell.length_c 78.91 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LU8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 77 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 42' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ACE 1 C ACE 300 1_555 A N TYR 2 C TYR 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.37 ? covale ? covale2 A C ASP 5 C ASP 304 1_555 A C1 0QE 6 C 0QE 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? covale ? covale3 A C1 0QE 6 C 0QE 305 1_555 B SG CYS 164 A CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.621 ? covale ? covale4 B C THR 121 A THR 146 1_555 B N SNN 122 A SNN 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.377 ? covale ? covale5 B C SNN 122 A SNN 147 1_555 B N HIS 123 A HIS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.235 ? covale ? covale6 B C5 SNN 122 A SNN 147 1_555 B N HIS 123 A HIS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale7 B ND2 ASN 142 A ASN 167 1_555 E C1 NAG . A NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale8 B ND2 ASN 247 A ASN 272 1_555 F C1 NAG . A NAG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? metalc ? metalc1 B SG CYS 194 A CYS 219 1_555 G HG EMC . A EMC 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 296 n n C1 O1 NAG sing 297 n n C1 O5 NAG sing 298 n n C1 H1 NAG sing 299 n n C2 C3 NAG sing 300 n n C2 N2 NAG sing 301 n n C2 H2 NAG sing 302 n n C3 C4 NAG sing 303 n n C3 O3 NAG sing 304 n n C3 H3 NAG sing 305 n n C4 C5 NAG sing 306 n n C4 O4 NAG sing 307 n n C4 H4 NAG sing 308 n n C5 C6 NAG sing 309 n n C5 O5 NAG sing 310 n n C5 H5 NAG sing 311 n n C6 O6 NAG sing 312 n n C6 H61 NAG sing 313 n n C6 H62 NAG sing 314 n n C7 C8 NAG sing 315 n n C7 N2 NAG sing 316 n n C7 O7 NAG doub 317 n n C8 H81 NAG sing 318 n n C8 H82 NAG sing 319 n n C8 H83 NAG sing 320 n n N2 HN2 NAG sing 321 n n O1 HO1 NAG sing 322 n n O3 HO3 NAG sing 323 n n O4 HO4 NAG sing 324 n n O6 HO6 NAG sing 325 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 5LU8 _atom_sites.fract_transf_matrix[1][1] 0.015547 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015547 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012673 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SO4 A 1 301 301 SO4 SO4 . D 3 SO4 A 1 302 302 SO4 SO4 . E 4 NAG A 1 303 303 NAG NAG . F 4 NAG A 1 304 304 NAG NAG . G 5 EMC A 1 305 305 EMC EMC . H 6 5KN A 1 306 306 5KN 5KN . I 7 HOH C 1 401 401 HOH HOH . J 7 HOH A 1 401 401 HOH HOH . J 7 HOH A 2 402 402 HOH HOH . J 7 HOH A 3 403 403 HOH HOH . J 7 HOH A 4 404 404 HOH HOH . J 7 HOH A 5 405 405 HOH HOH . J 7 HOH A 6 406 406 HOH HOH . J 7 HOH A 7 407 407 HOH HOH . J 7 HOH A 8 408 408 HOH HOH . J 7 HOH A 9 409 409 HOH HOH . J 7 HOH A 10 410 410 HOH HOH . J 7 HOH A 11 411 411 HOH HOH . J 7 HOH A 12 412 412 HOH HOH . J 7 HOH A 13 413 413 HOH HOH . J 7 HOH A 14 414 414 HOH HOH . J 7 HOH A 15 415 415 HOH HOH . J 7 HOH A 16 416 416 HOH HOH . J 7 HOH A 17 417 417 HOH HOH . J 7 HOH A 18 418 418 HOH HOH . J 7 HOH A 19 419 419 HOH HOH . J 7 HOH A 20 420 420 HOH HOH . J 7 HOH A 21 421 421 HOH HOH . J 7 HOH A 22 422 422 HOH HOH . J 7 HOH A 23 423 423 HOH HOH . J 7 HOH A 24 424 424 HOH HOH . J 7 HOH A 25 425 425 HOH HOH . J 7 HOH A 26 426 426 HOH HOH . J 7 HOH A 27 427 427 HOH HOH . J 7 HOH A 28 428 428 HOH HOH . J 7 HOH A 29 429 429 HOH HOH . J 7 HOH A 30 430 430 HOH HOH . J 7 HOH A 31 431 431 HOH HOH . J 7 HOH A 32 432 432 HOH HOH . J 7 HOH A 33 433 433 HOH HOH . J 7 HOH A 34 434 434 HOH HOH . J 7 HOH A 35 435 435 HOH HOH . J 7 HOH A 36 436 436 HOH HOH . J 7 HOH A 37 437 437 HOH HOH . J 7 HOH A 38 438 438 HOH HOH . J 7 HOH A 39 439 439 HOH HOH . J 7 HOH A 40 440 440 HOH HOH . J 7 HOH A 41 441 441 HOH HOH . J 7 HOH A 42 442 442 HOH HOH . J 7 HOH A 43 443 443 HOH HOH . J 7 HOH A 44 444 444 HOH HOH . J 7 HOH A 45 445 445 HOH HOH . J 7 HOH A 46 446 446 HOH HOH . J 7 HOH A 47 447 447 HOH HOH . J 7 HOH A 48 448 448 HOH HOH . J 7 HOH A 49 449 449 HOH HOH . J 7 HOH A 50 450 450 HOH HOH . J 7 HOH A 51 451 451 HOH HOH . J 7 HOH A 52 452 452 HOH HOH . J 7 HOH A 53 453 453 HOH HOH . J 7 HOH A 54 454 454 HOH HOH . J 7 HOH A 55 455 455 HOH HOH . J 7 HOH A 56 456 456 HOH HOH . J 7 HOH A 57 457 457 HOH HOH . J 7 HOH A 58 458 458 HOH HOH . J 7 HOH A 59 459 459 HOH HOH . J 7 HOH A 60 460 460 HOH HOH . J 7 HOH A 61 461 461 HOH HOH . J 7 HOH A 62 462 462 HOH HOH . J 7 HOH A 63 463 463 HOH HOH . J 7 HOH A 64 464 464 HOH HOH . J 7 HOH A 65 465 465 HOH HOH . J 7 HOH A 66 466 466 HOH HOH . J 7 HOH A 67 467 467 HOH HOH . J 7 HOH A 68 468 468 HOH HOH . J 7 HOH A 69 469 469 HOH HOH . J 7 HOH A 70 470 470 HOH HOH . J 7 HOH A 71 471 471 HOH HOH . J 7 HOH A 72 472 472 HOH HOH . J 7 HOH A 73 473 473 HOH HOH . J 7 HOH A 74 474 474 HOH HOH . J 7 HOH A 75 475 475 HOH HOH . J 7 HOH A 76 476 476 HOH HOH . J 7 HOH A 77 477 477 HOH HOH . J 7 HOH A 78 478 478 HOH HOH . J 7 HOH A 79 479 479 HOH HOH . J 7 HOH A 80 480 480 HOH HOH . J 7 HOH A 81 481 481 HOH HOH . J 7 HOH A 82 482 482 HOH HOH . J 7 HOH A 83 483 483 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . F 4 20.41 61.314 -0.769 1 50.87 ? C1 NAG 304 A 1 HETATM 2 C C2 NAG . . . F 4 20.963 62.546 -1.475 1 52.86 ? C2 NAG 304 A 1 HETATM 3 C C3 NAG . . . F 4 20.167 63.829 -1.213 1 54.85 ? C3 NAG 304 A 1 HETATM 4 C C4 NAG . . . F 4 18.697 63.661 -0.804 1 55.4 ? C4 NAG 304 A 1 HETATM 5 C C5 NAG . . . F 4 18.211 62.228 -0.546 1 54.82 ? C5 NAG 304 A 1 HETATM 6 C C6 NAG . . . F 4 16.809 62.027 -1.121 1 54.67 ? C6 NAG 304 A 1 HETATM 7 C C7 NAG . . . F 4 23.305 63.008 -2.003 1 51.35 ? C7 NAG 304 A 1 HETATM 8 C C8 NAG . . . F 4 24.702 63.207 -1.488 1 50.97 ? C8 NAG 304 A 1 HETATM 9 N N2 NAG . . . F 4 22.353 62.752 -1.101 1 51.3 ? N2 NAG 304 A 1 HETATM 10 O O3 NAG . . . F 4 20.204 64.621 -2.385 1 56.08 ? O3 NAG 304 A 1 HETATM 11 O O4 NAG . . . F 4 18.482 64.428 0.364 1 56.48 ? O4 NAG 304 A 1 HETATM 12 O O5 NAG . . . F 4 19.048 61.246 -1.123 1 53.76 ? O5 NAG 304 A 1 HETATM 13 O O6 NAG . . . F 4 16.412 60.678 -1 1 54.01 ? O6 NAG 304 A 1 HETATM 14 O O7 NAG . . . F 4 23.088 63.088 -3.211 1 50.61 ? O7 NAG 304 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 14 #