data_5LUR # _model_server_result.job_id nsyPtTvlfJWRYWTbQb1OIg _model_server_result.datetime_utc '2024-10-19 17:34:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5lur # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 5LUR # _exptl.entry_id 5LUR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 314.462 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PROGESTERONE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5LUR _cell.length_a 76.13 _cell.length_b 80.35 _cell.length_c 43.42 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LUR _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 80.35 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 8 A CYS 4 1_555 A SG CYS 87 A CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf2 B SG CYS 8 B CYS 4 1_555 B SG CYS 87 B CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? # _chem_comp.formula 'C21 H30 O2' _chem_comp.formula_weight 314.462 _chem_comp.id STR _chem_comp.mon_nstd_flag . _chem_comp.name PROGESTERONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 STR sing 290 n n C1 C10 STR sing 291 n n C1 H11 STR sing 292 n n C1 H12 STR sing 293 n n C2 C3 STR sing 294 n n C2 H21 STR sing 295 n n C2 H22 STR sing 296 n n C3 O3 STR doub 297 n n C3 C4 STR sing 298 n n C4 C5 STR doub 299 n n C4 H4 STR sing 300 n n C5 C6 STR sing 301 n n C5 C10 STR sing 302 n n C6 C7 STR sing 303 n n C6 H61 STR sing 304 n n C6 H62 STR sing 305 n n C7 C8 STR sing 306 n n C7 H71 STR sing 307 n n C7 H72 STR sing 308 n n C8 C9 STR sing 309 n n C8 C14 STR sing 310 n n C8 H8 STR sing 311 n n C9 C10 STR sing 312 n n C9 C11 STR sing 313 n n C9 H9 STR sing 314 n n C10 C19 STR sing 315 n n C11 C12 STR sing 316 n n C11 H111 STR sing 317 n n C11 H112 STR sing 318 n n C12 C13 STR sing 319 n n C12 H121 STR sing 320 n n C12 H122 STR sing 321 n n C13 C14 STR sing 322 n n C13 C17 STR sing 323 n n C13 C18 STR sing 324 n n C14 C15 STR sing 325 n n C14 H14 STR sing 326 n n C15 C16 STR sing 327 n n C15 H151 STR sing 328 n n C15 H152 STR sing 329 n n C16 C17 STR sing 330 n n C16 H161 STR sing 331 n n C16 H162 STR sing 332 n n C17 C20 STR sing 333 n n C17 H17 STR sing 334 n n C18 H181 STR sing 335 n n C18 H182 STR sing 336 n n C18 H183 STR sing 337 n n C19 H191 STR sing 338 n n C19 H192 STR sing 339 n n C19 H193 STR sing 340 n n C20 O20 STR doub 341 n n C20 C21 STR sing 342 n n C21 H211 STR sing 343 n n C21 H212 STR sing 344 n n C21 H213 STR sing 345 n n # _atom_sites.entry_id 5LUR _atom_sites.fract_transf_matrix[1][1] 0.013135 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012446 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023031 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 STR A 1 201 2 STR STR . D 2 STR B 1 201 1 STR STR . E 3 CL B 1 202 1 CL CL . F 4 HOH A 1 301 26 HOH HOH . F 4 HOH A 2 302 7 HOH HOH . F 4 HOH A 3 303 12 HOH HOH . F 4 HOH A 4 304 14 HOH HOH . F 4 HOH A 5 305 1 HOH HOH . F 4 HOH A 6 306 16 HOH HOH . F 4 HOH A 7 307 20 HOH HOH . F 4 HOH A 8 308 11 HOH HOH . F 4 HOH A 9 309 10 HOH HOH . F 4 HOH A 10 310 21 HOH HOH . F 4 HOH A 11 311 8 HOH HOH . F 4 HOH A 12 312 4 HOH HOH . F 4 HOH A 13 313 2 HOH HOH . F 4 HOH A 14 314 24 HOH HOH . F 4 HOH A 15 315 25 HOH HOH . F 4 HOH A 16 316 18 HOH HOH . F 4 HOH A 17 317 5 HOH HOH . F 4 HOH A 18 318 3 HOH HOH . F 4 HOH A 19 319 22 HOH HOH . F 4 HOH A 20 320 19 HOH HOH . F 4 HOH A 21 321 6 HOH HOH . F 4 HOH A 22 322 17 HOH HOH . F 4 HOH A 23 323 23 HOH HOH . G 4 HOH B 1 301 15 HOH HOH . G 4 HOH B 2 302 9 HOH HOH . G 4 HOH B 3 303 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 STR . . . D 2 2.023 27.622 -28.665 1 67.71 ? C1 STR 201 B 1 HETATM 2 C C2 STR . . . D 2 2.359 27.55 -30.161 1 68.65 ? C2 STR 201 B 1 HETATM 3 C C3 STR . . . D 2 3.284 28.674 -30.603 1 69.7 ? C3 STR 201 B 1 HETATM 4 O O3 STR . . . D 2 3.382 28.956 -31.793 1 65.74 ? O3 STR 201 B 1 HETATM 5 C C4 STR . . . D 2 4.092 29.419 -29.599 1 67.74 ? C4 STR 201 B 1 HETATM 6 C C5 STR . . . D 2 4.097 29.086 -28.28 1 66.17 ? C5 STR 201 B 1 HETATM 7 C C6 STR . . . D 2 5.101 29.782 -27.371 1 60.17 ? C6 STR 201 B 1 HETATM 8 C C7 STR . . . D 2 4.502 30.148 -26.014 1 58.35 ? C7 STR 201 B 1 HETATM 9 C C8 STR . . . D 2 3.645 29.062 -25.362 1 59.37 ? C8 STR 201 B 1 HETATM 10 C C9 STR . . . D 2 2.587 28.532 -26.362 1 64.58 ? C9 STR 201 B 1 HETATM 11 C C10 STR . . . D 2 3.181 28.001 -27.7 1 66.54 ? C10 STR 201 B 1 HETATM 12 C C11 STR . . . D 2 1.555 27.581 -25.681 1 65.21 ? C11 STR 201 B 1 HETATM 13 C C12 STR . . . D 2 0.917 28.166 -24.403 1 65.17 ? C12 STR 201 B 1 HETATM 14 C C13 STR . . . D 2 1.971 28.664 -23.396 1 64.59 ? C13 STR 201 B 1 HETATM 15 C C14 STR . . . D 2 2.93 29.63 -24.107 1 60.19 ? C14 STR 201 B 1 HETATM 16 C C15 STR . . . D 2 3.717 30.255 -22.948 1 53.27 ? C15 STR 201 B 1 HETATM 17 C C16 STR . . . D 2 2.696 30.385 -21.827 1 51.93 ? C16 STR 201 B 1 HETATM 18 C C17 STR . . . D 2 1.462 29.594 -22.289 1 59.63 ? C17 STR 201 B 1 HETATM 19 C C18 STR . . . D 2 2.686 27.442 -22.766 1 68.64 ? C18 STR 201 B 1 HETATM 20 C C19 STR . . . D 2 4.072 26.777 -27.481 1 65.08 ? C19 STR 201 B 1 HETATM 21 C C20 STR . . . D 2 0.726 28.85 -21.198 1 62.08 ? C20 STR 201 B 1 HETATM 22 O O20 STR . . . D 2 1.333 28.55 -20.179 1 69.4 ? O20 STR 201 B 1 HETATM 23 C C21 STR . . . D 2 -0.724 28.467 -21.371 1 56.94 ? C21 STR 201 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 23 #