data_5LV1 # _model_server_result.job_id s0UKMz1y2onlg25pAIMN-A _model_server_result.datetime_utc '2024-11-25 08:29:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5lv1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":301}' # _entry.id 5LV1 # _exptl.entry_id 5LV1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 80.988 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description oxidanylphosphinate _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5LV1 _cell.length_a 152.175 _cell.length_b 152.175 _cell.length_c 67.915 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LV1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,G 1 1 B,E,H 2 1 C,F,I 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 103 A CYS 103 1_555 A SG CYS 179 A CYS 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? disulf ? disulf2 B SG CYS 103 C CYS 103 1_555 B SG CYS 179 C CYS 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? disulf ? disulf3 C SG CYS 103 B CYS 103 1_555 C SG CYS 179 B CYS 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? # _chem_comp.formula 'H2 O3 P -1' _chem_comp.formula_weight 80.988 _chem_comp.id 78T _chem_comp.mon_nstd_flag . _chem_comp.name oxidanylphosphinate _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3 P1 78T sing 1 n n P1 O2 78T doub 2 n n P1 O1 78T sing 3 n n O3 H3 78T sing 4 n n P1 H4 78T sing 5 n n # _atom_sites.entry_id 5LV1 _atom_sites.fract_transf_matrix[1][1] 0.006571 _atom_sites.fract_transf_matrix[1][2] 0.003794 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007588 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014724 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 78T A 1 301 2 78T POM . E 2 78T C 1 301 3 78T POM . F 2 78T B 1 301 1 78T POM . G 3 HOH A 1 401 117 HOH HOH . G 3 HOH A 2 402 106 HOH HOH . G 3 HOH A 3 403 2 HOH HOH . G 3 HOH A 4 404 78 HOH HOH . G 3 HOH A 5 405 11 HOH HOH . G 3 HOH A 6 406 37 HOH HOH . G 3 HOH A 7 407 13 HOH HOH . G 3 HOH A 8 408 22 HOH HOH . G 3 HOH A 9 409 114 HOH HOH . G 3 HOH A 10 410 65 HOH HOH . G 3 HOH A 11 411 102 HOH HOH . G 3 HOH A 12 412 115 HOH HOH . G 3 HOH A 13 413 35 HOH HOH . G 3 HOH A 14 414 105 HOH HOH . G 3 HOH A 15 415 79 HOH HOH . G 3 HOH A 16 416 34 HOH HOH . G 3 HOH A 17 417 4 HOH HOH . G 3 HOH A 18 418 116 HOH HOH . G 3 HOH A 19 419 66 HOH HOH . G 3 HOH A 20 420 70 HOH HOH . G 3 HOH A 21 421 103 HOH HOH . G 3 HOH A 22 422 39 HOH HOH . G 3 HOH A 23 423 57 HOH HOH . G 3 HOH A 24 424 44 HOH HOH . G 3 HOH A 25 425 38 HOH HOH . G 3 HOH A 26 426 113 HOH HOH . G 3 HOH A 27 427 101 HOH HOH . G 3 HOH A 28 428 52 HOH HOH . G 3 HOH A 29 429 56 HOH HOH . G 3 HOH A 30 430 1 HOH HOH . G 3 HOH A 31 431 48 HOH HOH . G 3 HOH A 32 432 46 HOH HOH . G 3 HOH A 33 433 72 HOH HOH . G 3 HOH A 34 434 14 HOH HOH . G 3 HOH A 35 435 33 HOH HOH . G 3 HOH A 36 436 112 HOH HOH . G 3 HOH A 37 437 111 HOH HOH . G 3 HOH A 38 438 43 HOH HOH . G 3 HOH A 39 439 17 HOH HOH . G 3 HOH A 40 440 104 HOH HOH . G 3 HOH A 41 441 71 HOH HOH . H 3 HOH C 1 401 28 HOH HOH . H 3 HOH C 2 402 64 HOH HOH . H 3 HOH C 3 403 36 HOH HOH . H 3 HOH C 4 404 50 HOH HOH . H 3 HOH C 5 405 62 HOH HOH . H 3 HOH C 6 406 29 HOH HOH . H 3 HOH C 7 407 25 HOH HOH . H 3 HOH C 8 408 68 HOH HOH . H 3 HOH C 9 409 10 HOH HOH . H 3 HOH C 10 410 63 HOH HOH . H 3 HOH C 11 411 60 HOH HOH . H 3 HOH C 12 412 18 HOH HOH . H 3 HOH C 13 413 107 HOH HOH . H 3 HOH C 14 414 41 HOH HOH . H 3 HOH C 15 415 85 HOH HOH . H 3 HOH C 16 416 31 HOH HOH . H 3 HOH C 17 417 118 HOH HOH . H 3 HOH C 18 418 3 HOH HOH . H 3 HOH C 19 419 73 HOH HOH . H 3 HOH C 20 420 24 HOH HOH . H 3 HOH C 21 421 97 HOH HOH . H 3 HOH C 22 422 89 HOH HOH . H 3 HOH C 23 423 122 HOH HOH . H 3 HOH C 24 424 40 HOH HOH . H 3 HOH C 25 425 77 HOH HOH . H 3 HOH C 26 426 96 HOH HOH . I 3 HOH B 1 401 83 HOH HOH . I 3 HOH B 2 402 98 HOH HOH . I 3 HOH B 3 403 76 HOH HOH . I 3 HOH B 4 404 91 HOH HOH . I 3 HOH B 5 405 121 HOH HOH . I 3 HOH B 6 406 23 HOH HOH . I 3 HOH B 7 407 100 HOH HOH . I 3 HOH B 8 408 55 HOH HOH . I 3 HOH B 9 409 47 HOH HOH . I 3 HOH B 10 410 8 HOH HOH . I 3 HOH B 11 411 30 HOH HOH . I 3 HOH B 12 412 12 HOH HOH . I 3 HOH B 13 413 69 HOH HOH . I 3 HOH B 14 414 21 HOH HOH . I 3 HOH B 15 415 15 HOH HOH . I 3 HOH B 16 416 88 HOH HOH . I 3 HOH B 17 417 9 HOH HOH . I 3 HOH B 18 418 84 HOH HOH . I 3 HOH B 19 419 7 HOH HOH . I 3 HOH B 20 420 27 HOH HOH . I 3 HOH B 21 421 58 HOH HOH . I 3 HOH B 22 422 19 HOH HOH . I 3 HOH B 23 423 20 HOH HOH . I 3 HOH B 24 424 92 HOH HOH . I 3 HOH B 25 425 61 HOH HOH . I 3 HOH B 26 426 99 HOH HOH . I 3 HOH B 27 427 81 HOH HOH . I 3 HOH B 28 428 119 HOH HOH . I 3 HOH B 29 429 95 HOH HOH . I 3 HOH B 30 430 16 HOH HOH . I 3 HOH B 31 431 94 HOH HOH . I 3 HOH B 32 432 110 HOH HOH . I 3 HOH B 33 433 53 HOH HOH . I 3 HOH B 34 434 26 HOH HOH . I 3 HOH B 35 435 42 HOH HOH . I 3 HOH B 36 436 45 HOH HOH . I 3 HOH B 37 437 120 HOH HOH . I 3 HOH B 38 438 5 HOH HOH . I 3 HOH B 39 439 51 HOH HOH . I 3 HOH B 40 440 80 HOH HOH . I 3 HOH B 41 441 54 HOH HOH . I 3 HOH B 42 442 67 HOH HOH . I 3 HOH B 43 443 49 HOH HOH . I 3 HOH B 44 444 6 HOH HOH . I 3 HOH B 45 445 86 HOH HOH . I 3 HOH B 46 446 59 HOH HOH . I 3 HOH B 47 447 75 HOH HOH . I 3 HOH B 48 448 82 HOH HOH . I 3 HOH B 49 449 32 HOH HOH . I 3 HOH B 50 450 93 HOH HOH . I 3 HOH B 51 451 90 HOH HOH . I 3 HOH B 52 452 123 HOH HOH . I 3 HOH B 53 453 87 HOH HOH . I 3 HOH B 54 454 108 HOH HOH . I 3 HOH B 55 455 124 HOH HOH . I 3 HOH B 56 456 109 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 78T . . . F 2 53.775 216.639 52.266 1 19.6 ? P1 78T 301 B 1 HETATM 2 O O1 78T . . . F 2 54.422 217.697 53.135 1 17.96 ? O1 78T 301 B 1 HETATM 3 O O2 78T . . . F 2 53.645 215.358 53.065 1 19.35 ? O2 78T 301 B 1 HETATM 4 O O3 78T . . . F 2 54.541 216.51 50.873 1 18.66 ? O3 78T 301 B 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 245 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #