data_5LVG
#
_model_server_result.job_id            c78TpRehaPCcj5dsAhkyzg 
_model_server_result.datetime_utc      '2024-12-23 09:03:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5lvg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":210}' 
#
_entry.id    5LVG 
#
_exptl.entry_id    5LVG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5LVG 
_cell.length_a            78.199 
_cell.length_b            78.199 
_cell.length_c            37.189 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5LVG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             K 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? 
disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? 
disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? 
metalc ? metalc1 A NH2 ARG 14 A ARG 14 1_555 B RU RU . A RU 201 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.959 ? 
metalc ? metalc2 A NE2 HIS 15 A HIS 15 1_555 B RU RU . A RU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? 
metalc ? metalc3 A O SER 60 A SER 60 1_555 K NA NA . A NA 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
metalc ? metalc4 A O CYS 64 A CYS 64 1_555 K NA NA . A NA 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? 
metalc ? metalc5 A OG SER 72 A SER 72 1_555 K NA NA . A NA 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? 
metalc ? metalc6 A O ARG 73 A ARG 73 1_555 K NA NA . A NA 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? 
metalc ? metalc7 B RU RU . A RU 201 1_555 L O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? 
metalc ? metalc8 B RU RU . A RU 201 1_555 L O HOH . A HOH 315 8_776 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? 
metalc ? metalc9 B RU RU . A RU 201 1_555 L O HOH . A HOH 330 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? 
metalc ? metalc10 K NA NA . A NA 210 1_555 L O HOH . A HOH 352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? 
metalc ? metalc11 K NA NA . A NA 210 1_555 L O HOH . A HOH 363 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5LVG 
_atom_sites.fract_transf_matrix[1][1]    0.012788 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012788 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.02689 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 RU A 1 201 1 RU RU . 
C 3 CL A 1 202 2 CL CL . 
D 3 CL A 1 203 3 CL CL . 
E 3 CL A 1 204 5 CL CL . 
F 3 CL A 1 205 6 CL CL . 
G 4 ACT A 1 206 1 ACT ACT . 
H 4 ACT A 1 207 2 ACT ACT . 
I 4 ACT A 1 208 3 ACT ACT . 
J 4 ACT A 1 209 4 ACT ACT . 
K 5 NA A 1 210 1 NA NA . 
L 6 HOH A 1 301 110 HOH HOH . 
L 6 HOH A 2 302 61 HOH HOH . 
L 6 HOH A 3 303 91 HOH HOH . 
L 6 HOH A 4 304 50 HOH HOH . 
L 6 HOH A 5 305 103 HOH HOH . 
L 6 HOH A 6 306 81 HOH HOH . 
L 6 HOH A 7 307 102 HOH HOH . 
L 6 HOH A 8 308 112 HOH HOH . 
L 6 HOH A 9 309 54 HOH HOH . 
L 6 HOH A 10 310 73 HOH HOH . 
L 6 HOH A 11 311 33 HOH HOH . 
L 6 HOH A 12 312 52 HOH HOH . 
L 6 HOH A 13 313 35 HOH HOH . 
L 6 HOH A 14 314 67 HOH HOH . 
L 6 HOH A 15 315 48 HOH HOH . 
L 6 HOH A 16 316 101 HOH HOH . 
L 6 HOH A 17 317 116 HOH HOH . 
L 6 HOH A 18 318 107 HOH HOH . 
L 6 HOH A 19 319 38 HOH HOH . 
L 6 HOH A 20 320 59 HOH HOH . 
L 6 HOH A 21 321 79 HOH HOH . 
L 6 HOH A 22 322 53 HOH HOH . 
L 6 HOH A 23 323 29 HOH HOH . 
L 6 HOH A 24 324 19 HOH HOH . 
L 6 HOH A 25 325 114 HOH HOH . 
L 6 HOH A 26 326 63 HOH HOH . 
L 6 HOH A 27 327 96 HOH HOH . 
L 6 HOH A 28 328 66 HOH HOH . 
L 6 HOH A 29 329 80 HOH HOH . 
L 6 HOH A 30 330 121 HOH HOH . 
L 6 HOH A 31 331 16 HOH HOH . 
L 6 HOH A 32 332 36 HOH HOH . 
L 6 HOH A 33 333 82 HOH HOH . 
L 6 HOH A 34 334 11 HOH HOH . 
L 6 HOH A 35 335 21 HOH HOH . 
L 6 HOH A 36 336 76 HOH HOH . 
L 6 HOH A 37 337 122 HOH HOH . 
L 6 HOH A 38 338 24 HOH HOH . 
L 6 HOH A 39 339 14 HOH HOH . 
L 6 HOH A 40 340 40 HOH HOH . 
L 6 HOH A 41 341 118 HOH HOH . 
L 6 HOH A 42 342 44 HOH HOH . 
L 6 HOH A 43 343 111 HOH HOH . 
L 6 HOH A 44 344 69 HOH HOH . 
L 6 HOH A 45 345 119 HOH HOH . 
L 6 HOH A 46 346 12 HOH HOH . 
L 6 HOH A 47 347 68 HOH HOH . 
L 6 HOH A 48 348 64 HOH HOH . 
L 6 HOH A 49 349 23 HOH HOH . 
L 6 HOH A 50 350 37 HOH HOH . 
L 6 HOH A 51 351 71 HOH HOH . 
L 6 HOH A 52 352 74 HOH HOH . 
L 6 HOH A 53 353 47 HOH HOH . 
L 6 HOH A 54 354 120 HOH HOH . 
L 6 HOH A 55 355 56 HOH HOH . 
L 6 HOH A 56 356 99 HOH HOH . 
L 6 HOH A 57 357 97 HOH HOH . 
L 6 HOH A 58 358 10 HOH HOH . 
L 6 HOH A 59 359 93 HOH HOH . 
L 6 HOH A 60 360 13 HOH HOH . 
L 6 HOH A 61 361 30 HOH HOH . 
L 6 HOH A 62 362 108 HOH HOH . 
L 6 HOH A 63 363 39 HOH HOH . 
L 6 HOH A 64 364 27 HOH HOH . 
L 6 HOH A 65 365 34 HOH HOH . 
L 6 HOH A 66 366 41 HOH HOH . 
L 6 HOH A 67 367 89 HOH HOH . 
L 6 HOH A 68 368 60 HOH HOH . 
L 6 HOH A 69 369 25 HOH HOH . 
L 6 HOH A 70 370 20 HOH HOH . 
L 6 HOH A 71 371 65 HOH HOH . 
L 6 HOH A 72 372 46 HOH HOH . 
L 6 HOH A 73 373 113 HOH HOH . 
L 6 HOH A 74 374 43 HOH HOH . 
L 6 HOH A 75 375 51 HOH HOH . 
L 6 HOH A 76 376 98 HOH HOH . 
L 6 HOH A 77 377 28 HOH HOH . 
L 6 HOH A 78 378 31 HOH HOH . 
L 6 HOH A 79 379 95 HOH HOH . 
L 6 HOH A 80 380 78 HOH HOH . 
L 6 HOH A 81 381 70 HOH HOH . 
L 6 HOH A 82 382 6 HOH HOH . 
L 6 HOH A 83 383 26 HOH HOH . 
L 6 HOH A 84 384 17 HOH HOH . 
L 6 HOH A 85 385 18 HOH HOH . 
L 6 HOH A 86 386 7 HOH HOH . 
L 6 HOH A 87 387 8 HOH HOH . 
L 6 HOH A 88 388 87 HOH HOH . 
L 6 HOH A 89 389 22 HOH HOH . 
L 6 HOH A 90 390 45 HOH HOH . 
L 6 HOH A 91 391 90 HOH HOH . 
L 6 HOH A 92 392 55 HOH HOH . 
L 6 HOH A 93 393 9 HOH HOH . 
L 6 HOH A 94 394 15 HOH HOH . 
L 6 HOH A 95 395 106 HOH HOH . 
L 6 HOH A 96 396 100 HOH HOH . 
L 6 HOH A 97 397 117 HOH HOH . 
L 6 HOH A 98 398 75 HOH HOH . 
L 6 HOH A 99 399 105 HOH HOH . 
L 6 HOH A 100 400 72 HOH HOH . 
L 6 HOH A 101 401 115 HOH HOH . 
L 6 HOH A 102 402 49 HOH HOH . 
L 6 HOH A 103 403 109 HOH HOH . 
L 6 HOH A 104 404 58 HOH HOH . 
L 6 HOH A 105 405 62 HOH HOH . 
L 6 HOH A 106 406 77 HOH HOH . 
L 6 HOH A 107 407 83 HOH HOH . 
L 6 HOH A 108 408 88 HOH HOH . 
L 6 HOH A 109 409 84 HOH HOH . 
L 6 HOH A 110 410 42 HOH HOH . 
L 6 HOH A 111 411 32 HOH HOH . 
L 6 HOH A 112 412 104 HOH HOH . 
L 6 HOH A 113 413 86 HOH HOH . 
L 6 HOH A 114 414 57 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         K 
_atom_site.label_entity_id       5 
_atom_site.Cartn_x               70.471 
_atom_site.Cartn_y               64.6 
_atom_site.Cartn_z               50 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        27.59 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           210 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           1 
#