data_5LVL # _model_server_result.job_id wd6riK0KTOJdG9tqMLcnKg _model_server_result.datetime_utc '2024-11-30 08:57:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5lvl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 5LVL # _exptl.entry_id 5LVL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.34 _cell.angle_gamma 90 _cell.entry_id 5LVL _cell.length_a 148.24 _cell.length_b 44.43 _cell.length_c 47.25 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LVL _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASN 192 A ASN 240 1_555 A N SEP 193 A SEP 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale2 A C SEP 193 A SEP 241 1_555 A N PHE 194 A PHE 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 111 n n S C1 DMS sing 112 n n S C2 DMS sing 113 n n C1 H11 DMS sing 114 n n C1 H12 DMS sing 115 n n C1 H13 DMS sing 116 n n C2 H21 DMS sing 117 n n C2 H22 DMS sing 118 n n C2 H23 DMS sing 119 n n # _atom_sites.entry_id 5LVL _atom_sites.fract_transf_matrix[1][1] 0.006746 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001231 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022507 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021513 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 537 A 1 401 500 537 653 . C 3 DTD A 1 402 600 DTD DTD . D 4 DMS A 1 403 700 DMS DMS . E 4 DMS A 1 404 710 DMS DMS . F 4 DMS A 1 405 720 DMS DMS . G 5 HOH A 1 501 60 HOH HOH . G 5 HOH A 2 502 244 HOH HOH . G 5 HOH A 3 503 222 HOH HOH . G 5 HOH A 4 504 53 HOH HOH . G 5 HOH A 5 505 196 HOH HOH . G 5 HOH A 6 506 181 HOH HOH . G 5 HOH A 7 507 254 HOH HOH . G 5 HOH A 8 508 80 HOH HOH . G 5 HOH A 9 509 115 HOH HOH . G 5 HOH A 10 510 246 HOH HOH . G 5 HOH A 11 511 155 HOH HOH . G 5 HOH A 12 512 132 HOH HOH . G 5 HOH A 13 513 241 HOH HOH . G 5 HOH A 14 514 248 HOH HOH . G 5 HOH A 15 515 242 HOH HOH . G 5 HOH A 16 516 184 HOH HOH . G 5 HOH A 17 517 129 HOH HOH . G 5 HOH A 18 518 142 HOH HOH . G 5 HOH A 19 519 212 HOH HOH . G 5 HOH A 20 520 123 HOH HOH . G 5 HOH A 21 521 186 HOH HOH . G 5 HOH A 22 522 88 HOH HOH . G 5 HOH A 23 523 66 HOH HOH . G 5 HOH A 24 524 200 HOH HOH . G 5 HOH A 25 525 153 HOH HOH . G 5 HOH A 26 526 172 HOH HOH . G 5 HOH A 27 527 121 HOH HOH . G 5 HOH A 28 528 107 HOH HOH . G 5 HOH A 29 529 81 HOH HOH . G 5 HOH A 30 530 106 HOH HOH . G 5 HOH A 31 531 14 HOH HOH . G 5 HOH A 32 532 116 HOH HOH . G 5 HOH A 33 533 211 HOH HOH . G 5 HOH A 34 534 91 HOH HOH . G 5 HOH A 35 535 157 HOH HOH . G 5 HOH A 36 536 127 HOH HOH . G 5 HOH A 37 537 52 HOH HOH . G 5 HOH A 38 538 26 HOH HOH . G 5 HOH A 39 539 229 HOH HOH . G 5 HOH A 40 540 234 HOH HOH . G 5 HOH A 41 541 25 HOH HOH . G 5 HOH A 42 542 187 HOH HOH . G 5 HOH A 43 543 56 HOH HOH . G 5 HOH A 44 544 27 HOH HOH . G 5 HOH A 45 545 48 HOH HOH . G 5 HOH A 46 546 164 HOH HOH . G 5 HOH A 47 547 23 HOH HOH . G 5 HOH A 48 548 175 HOH HOH . G 5 HOH A 49 549 117 HOH HOH . G 5 HOH A 50 550 245 HOH HOH . G 5 HOH A 51 551 51 HOH HOH . G 5 HOH A 52 552 144 HOH HOH . G 5 HOH A 53 553 201 HOH HOH . G 5 HOH A 54 554 124 HOH HOH . G 5 HOH A 55 555 162 HOH HOH . G 5 HOH A 56 556 4 HOH HOH . G 5 HOH A 57 557 190 HOH HOH . G 5 HOH A 58 558 205 HOH HOH . G 5 HOH A 59 559 24 HOH HOH . G 5 HOH A 60 560 208 HOH HOH . G 5 HOH A 61 561 28 HOH HOH . G 5 HOH A 62 562 30 HOH HOH . G 5 HOH A 63 563 224 HOH HOH . G 5 HOH A 64 564 5 HOH HOH . G 5 HOH A 65 565 214 HOH HOH . G 5 HOH A 66 566 35 HOH HOH . G 5 HOH A 67 567 77 HOH HOH . G 5 HOH A 68 568 43 HOH HOH . G 5 HOH A 69 569 9 HOH HOH . G 5 HOH A 70 570 135 HOH HOH . G 5 HOH A 71 571 149 HOH HOH . G 5 HOH A 72 572 119 HOH HOH . G 5 HOH A 73 573 141 HOH HOH . G 5 HOH A 74 574 89 HOH HOH . G 5 HOH A 75 575 97 HOH HOH . G 5 HOH A 76 576 101 HOH HOH . G 5 HOH A 77 577 87 HOH HOH . G 5 HOH A 78 578 113 HOH HOH . G 5 HOH A 79 579 78 HOH HOH . G 5 HOH A 80 580 131 HOH HOH . G 5 HOH A 81 581 34 HOH HOH . G 5 HOH A 82 582 11 HOH HOH . G 5 HOH A 83 583 266 HOH HOH . G 5 HOH A 84 584 90 HOH HOH . G 5 HOH A 85 585 104 HOH HOH . G 5 HOH A 86 586 233 HOH HOH . G 5 HOH A 87 587 82 HOH HOH . G 5 HOH A 88 588 7 HOH HOH . G 5 HOH A 89 589 215 HOH HOH . G 5 HOH A 90 590 156 HOH HOH . G 5 HOH A 91 591 42 HOH HOH . G 5 HOH A 92 592 95 HOH HOH . G 5 HOH A 93 593 83 HOH HOH . G 5 HOH A 94 594 239 HOH HOH . G 5 HOH A 95 595 168 HOH HOH . G 5 HOH A 96 596 96 HOH HOH . G 5 HOH A 97 597 151 HOH HOH . G 5 HOH A 98 598 103 HOH HOH . G 5 HOH A 99 599 223 HOH HOH . G 5 HOH A 100 600 197 HOH HOH . G 5 HOH A 101 601 228 HOH HOH . G 5 HOH A 102 602 125 HOH HOH . G 5 HOH A 103 603 217 HOH HOH . G 5 HOH A 104 604 199 HOH HOH . G 5 HOH A 105 605 10 HOH HOH . G 5 HOH A 106 606 18 HOH HOH . G 5 HOH A 107 607 84 HOH HOH . G 5 HOH A 108 608 44 HOH HOH . G 5 HOH A 109 609 47 HOH HOH . G 5 HOH A 110 610 264 HOH HOH . G 5 HOH A 111 611 33 HOH HOH . G 5 HOH A 112 612 1 HOH HOH . G 5 HOH A 113 613 79 HOH HOH . G 5 HOH A 114 614 166 HOH HOH . G 5 HOH A 115 615 221 HOH HOH . G 5 HOH A 116 616 173 HOH HOH . G 5 HOH A 117 617 76 HOH HOH . G 5 HOH A 118 618 20 HOH HOH . G 5 HOH A 119 619 110 HOH HOH . G 5 HOH A 120 620 50 HOH HOH . G 5 HOH A 121 621 152 HOH HOH . G 5 HOH A 122 622 191 HOH HOH . G 5 HOH A 123 623 13 HOH HOH . G 5 HOH A 124 624 139 HOH HOH . G 5 HOH A 125 625 29 HOH HOH . G 5 HOH A 126 626 170 HOH HOH . G 5 HOH A 127 627 41 HOH HOH . G 5 HOH A 128 628 143 HOH HOH . G 5 HOH A 129 629 188 HOH HOH . G 5 HOH A 130 630 19 HOH HOH . G 5 HOH A 131 631 161 HOH HOH . G 5 HOH A 132 632 225 HOH HOH . G 5 HOH A 133 633 67 HOH HOH . G 5 HOH A 134 634 65 HOH HOH . G 5 HOH A 135 635 193 HOH HOH . G 5 HOH A 136 636 8 HOH HOH . G 5 HOH A 137 637 154 HOH HOH . G 5 HOH A 138 638 189 HOH HOH . G 5 HOH A 139 639 15 HOH HOH . G 5 HOH A 140 640 55 HOH HOH . G 5 HOH A 141 641 3 HOH HOH . G 5 HOH A 142 642 159 HOH HOH . G 5 HOH A 143 643 32 HOH HOH . G 5 HOH A 144 644 102 HOH HOH . G 5 HOH A 145 645 99 HOH HOH . G 5 HOH A 146 646 209 HOH HOH . G 5 HOH A 147 647 231 HOH HOH . G 5 HOH A 148 648 36 HOH HOH . G 5 HOH A 149 649 38 HOH HOH . G 5 HOH A 150 650 40 HOH HOH . G 5 HOH A 151 651 2 HOH HOH . G 5 HOH A 152 652 45 HOH HOH . G 5 HOH A 153 653 195 HOH HOH . G 5 HOH A 154 654 92 HOH HOH . G 5 HOH A 155 655 69 HOH HOH . G 5 HOH A 156 656 134 HOH HOH . G 5 HOH A 157 657 136 HOH HOH . G 5 HOH A 158 658 122 HOH HOH . G 5 HOH A 159 659 94 HOH HOH . G 5 HOH A 160 660 49 HOH HOH . G 5 HOH A 161 661 58 HOH HOH . G 5 HOH A 162 662 64 HOH HOH . G 5 HOH A 163 663 176 HOH HOH . G 5 HOH A 164 664 206 HOH HOH . G 5 HOH A 165 665 57 HOH HOH . G 5 HOH A 166 666 62 HOH HOH . G 5 HOH A 167 667 12 HOH HOH . G 5 HOH A 168 668 31 HOH HOH . G 5 HOH A 169 669 54 HOH HOH . G 5 HOH A 170 670 250 HOH HOH . G 5 HOH A 171 671 22 HOH HOH . G 5 HOH A 172 672 160 HOH HOH . G 5 HOH A 173 673 267 HOH HOH . G 5 HOH A 174 674 98 HOH HOH . G 5 HOH A 175 675 71 HOH HOH . G 5 HOH A 176 676 202 HOH HOH . G 5 HOH A 177 677 133 HOH HOH . G 5 HOH A 178 678 114 HOH HOH . G 5 HOH A 179 679 46 HOH HOH . G 5 HOH A 180 680 192 HOH HOH . G 5 HOH A 181 681 146 HOH HOH . G 5 HOH A 182 682 17 HOH HOH . G 5 HOH A 183 683 112 HOH HOH . G 5 HOH A 184 684 145 HOH HOH . G 5 HOH A 185 685 238 HOH HOH . G 5 HOH A 186 686 177 HOH HOH . G 5 HOH A 187 687 108 HOH HOH . G 5 HOH A 188 688 243 HOH HOH . G 5 HOH A 189 689 72 HOH HOH . G 5 HOH A 190 690 138 HOH HOH . G 5 HOH A 191 691 232 HOH HOH . G 5 HOH A 192 692 227 HOH HOH . G 5 HOH A 193 693 21 HOH HOH . G 5 HOH A 194 694 70 HOH HOH . G 5 HOH A 195 695 85 HOH HOH . G 5 HOH A 196 696 68 HOH HOH . G 5 HOH A 197 697 6 HOH HOH . G 5 HOH A 198 698 73 HOH HOH . G 5 HOH A 199 699 16 HOH HOH . G 5 HOH A 200 700 236 HOH HOH . G 5 HOH A 201 701 237 HOH HOH . G 5 HOH A 202 702 235 HOH HOH . G 5 HOH A 203 703 74 HOH HOH . G 5 HOH A 204 704 61 HOH HOH . G 5 HOH A 205 705 219 HOH HOH . G 5 HOH A 206 706 86 HOH HOH . G 5 HOH A 207 707 218 HOH HOH . G 5 HOH A 208 708 140 HOH HOH . G 5 HOH A 209 709 150 HOH HOH . G 5 HOH A 210 710 147 HOH HOH . G 5 HOH A 211 711 93 HOH HOH . G 5 HOH A 212 712 226 HOH HOH . G 5 HOH A 213 713 262 HOH HOH . G 5 HOH A 214 714 249 HOH HOH . G 5 HOH A 215 715 204 HOH HOH . G 5 HOH A 216 716 252 HOH HOH . G 5 HOH A 217 717 261 HOH HOH . G 5 HOH A 218 718 109 HOH HOH . G 5 HOH A 219 719 130 HOH HOH . G 5 HOH A 220 720 198 HOH HOH . G 5 HOH A 221 721 257 HOH HOH . G 5 HOH A 222 722 182 HOH HOH . G 5 HOH A 223 723 59 HOH HOH . G 5 HOH A 224 724 137 HOH HOH . G 5 HOH A 225 725 260 HOH HOH . G 5 HOH A 226 726 178 HOH HOH . G 5 HOH A 227 727 207 HOH HOH . G 5 HOH A 228 728 180 HOH HOH . G 5 HOH A 229 729 39 HOH HOH . G 5 HOH A 230 730 167 HOH HOH . G 5 HOH A 231 731 174 HOH HOH . G 5 HOH A 232 732 265 HOH HOH . G 5 HOH A 233 733 158 HOH HOH . G 5 HOH A 234 734 128 HOH HOH . G 5 HOH A 235 735 111 HOH HOH . G 5 HOH A 236 736 100 HOH HOH . G 5 HOH A 237 737 247 HOH HOH . G 5 HOH A 238 738 213 HOH HOH . G 5 HOH A 239 739 253 HOH HOH . G 5 HOH A 240 740 194 HOH HOH . G 5 HOH A 241 741 258 HOH HOH . G 5 HOH A 242 742 126 HOH HOH . G 5 HOH A 243 743 240 HOH HOH . G 5 HOH A 244 744 259 HOH HOH . G 5 HOH A 245 745 37 HOH HOH . G 5 HOH A 246 746 230 HOH HOH . G 5 HOH A 247 747 148 HOH HOH . G 5 HOH A 248 748 251 HOH HOH . G 5 HOH A 249 749 210 HOH HOH . G 5 HOH A 250 750 169 HOH HOH . G 5 HOH A 251 751 263 HOH HOH . G 5 HOH A 252 752 120 HOH HOH . G 5 HOH A 253 753 165 HOH HOH . G 5 HOH A 254 754 183 HOH HOH . G 5 HOH A 255 755 163 HOH HOH . G 5 HOH A 256 756 255 HOH HOH . G 5 HOH A 257 757 179 HOH HOH . G 5 HOH A 258 758 220 HOH HOH . G 5 HOH A 259 759 118 HOH HOH . G 5 HOH A 260 760 75 HOH HOH . G 5 HOH A 261 761 105 HOH HOH . G 5 HOH A 262 762 256 HOH HOH . G 5 HOH A 263 763 185 HOH HOH . G 5 HOH A 264 764 203 HOH HOH . G 5 HOH A 265 765 216 HOH HOH . G 5 HOH A 266 766 171 HOH HOH . G 5 HOH A 267 767 63 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . E 4 -9.4 4.579 -20.945 0.64 56.02 ? S DMS 404 A 1 HETATM 2 O O DMS . . . E 4 -8.076 5.243 -20.742 0.64 53.78 ? O DMS 404 A 1 HETATM 3 C C1 DMS . . . E 4 -9.415 4.031 -22.652 0.64 19.04 ? C1 DMS 404 A 1 HETATM 4 C C2 DMS . . . E 4 -9.304 2.894 -20.309 0.64 34.23 ? C2 DMS 404 A 1 HETATM 5 H H11 DMS . . . E 4 -8.567 3.424 -22.835 0.64 22.84 ? H11 DMS 404 A 1 HETATM 6 H H12 DMS . . . E 4 -9.39 4.873 -23.294 0.64 22.84 ? H12 DMS 404 A 1 HETATM 7 H H13 DMS . . . E 4 -10.295 3.473 -22.837 0.64 22.84 ? H13 DMS 404 A 1 HETATM 8 H H21 DMS . . . E 4 -9.155 2.921 -19.261 0.64 41.08 ? H21 DMS 404 A 1 HETATM 9 H H22 DMS . . . E 4 -8.494 2.389 -20.767 0.64 41.08 ? H22 DMS 404 A 1 HETATM 10 H H23 DMS . . . E 4 -10.206 2.383 -20.524 0.64 41.08 ? H23 DMS 404 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 34 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 10 #