data_5LVN # _model_server_result.job_id B6Pk-JLZ5fCqEwABYHB1Tw _model_server_result.datetime_utc '2024-11-06 01:44:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5lvn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5LVN # _exptl.entry_id 5LVN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 152.235 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DITHIANE DIOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.44 _cell.angle_gamma 90 _cell.entry_id 5LVN _cell.length_a 147.405 _cell.length_b 44.32 _cell.length_c 47.67 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LVN _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASN 192 A ASN 240 1_555 A N SEP 193 A SEP 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 A C SEP 193 A SEP 241 1_555 A N PHE 194 A PHE 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? # _chem_comp.formula 'C4 H8 O2 S2' _chem_comp.formula_weight 152.235 _chem_comp.id DTD _chem_comp.mon_nstd_flag . _chem_comp.name 'DITHIANE DIOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S1 C1 DTD sing 117 n n S1 S4 DTD sing 118 n n C1 C2 DTD sing 119 n n C1 H11 DTD sing 120 n n C1 H12 DTD sing 121 n n C2 O2 DTD sing 122 n n C2 C3 DTD sing 123 n n C2 H21 DTD sing 124 n n O2 HO2 DTD sing 125 n n C3 O3 DTD sing 126 n n C3 C4 DTD sing 127 n n C3 H31 DTD sing 128 n n O3 HO3 DTD sing 129 n n C4 S4 DTD sing 130 n n C4 H41 DTD sing 131 n n C4 H42 DTD sing 132 n n # _atom_sites.entry_id 5LVN _atom_sites.fract_transf_matrix[1][1] 0.006784 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001373 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022563 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021403 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DTD A 1 401 3223 DTD DTD . C 3 ADN A 1 402 1 ADN ADN . D 4 CL A 1 403 1 CL CL . E 5 HOH A 1 501 161 HOH HOH . E 5 HOH A 2 502 246 HOH HOH . E 5 HOH A 3 503 54 HOH HOH . E 5 HOH A 4 504 199 HOH HOH . E 5 HOH A 5 505 250 HOH HOH . E 5 HOH A 6 506 45 HOH HOH . E 5 HOH A 7 507 214 HOH HOH . E 5 HOH A 8 508 115 HOH HOH . E 5 HOH A 9 509 97 HOH HOH . E 5 HOH A 10 510 85 HOH HOH . E 5 HOH A 11 511 41 HOH HOH . E 5 HOH A 12 512 113 HOH HOH . E 5 HOH A 13 513 107 HOH HOH . E 5 HOH A 14 514 44 HOH HOH . E 5 HOH A 15 515 124 HOH HOH . E 5 HOH A 16 516 17 HOH HOH . E 5 HOH A 17 517 50 HOH HOH . E 5 HOH A 18 518 151 HOH HOH . E 5 HOH A 19 519 106 HOH HOH . E 5 HOH A 20 520 213 HOH HOH . E 5 HOH A 21 521 94 HOH HOH . E 5 HOH A 22 522 59 HOH HOH . E 5 HOH A 23 523 158 HOH HOH . E 5 HOH A 24 524 95 HOH HOH . E 5 HOH A 25 525 128 HOH HOH . E 5 HOH A 26 526 66 HOH HOH . E 5 HOH A 27 527 220 HOH HOH . E 5 HOH A 28 528 189 HOH HOH . E 5 HOH A 29 529 236 HOH HOH . E 5 HOH A 30 530 164 HOH HOH . E 5 HOH A 31 531 112 HOH HOH . E 5 HOH A 32 532 101 HOH HOH . E 5 HOH A 33 533 237 HOH HOH . E 5 HOH A 34 534 212 HOH HOH . E 5 HOH A 35 535 229 HOH HOH . E 5 HOH A 36 536 81 HOH HOH . E 5 HOH A 37 537 184 HOH HOH . E 5 HOH A 38 538 156 HOH HOH . E 5 HOH A 39 539 42 HOH HOH . E 5 HOH A 40 540 149 HOH HOH . E 5 HOH A 41 541 140 HOH HOH . E 5 HOH A 42 542 89 HOH HOH . E 5 HOH A 43 543 14 HOH HOH . E 5 HOH A 44 544 208 HOH HOH . E 5 HOH A 45 545 65 HOH HOH . E 5 HOH A 46 546 98 HOH HOH . E 5 HOH A 47 547 127 HOH HOH . E 5 HOH A 48 548 202 HOH HOH . E 5 HOH A 49 549 242 HOH HOH . E 5 HOH A 50 550 11 HOH HOH . E 5 HOH A 51 551 87 HOH HOH . E 5 HOH A 52 552 46 HOH HOH . E 5 HOH A 53 553 82 HOH HOH . E 5 HOH A 54 554 232 HOH HOH . E 5 HOH A 55 555 217 HOH HOH . E 5 HOH A 56 556 32 HOH HOH . E 5 HOH A 57 557 52 HOH HOH . E 5 HOH A 58 558 235 HOH HOH . E 5 HOH A 59 559 163 HOH HOH . E 5 HOH A 60 560 139 HOH HOH . E 5 HOH A 61 561 78 HOH HOH . E 5 HOH A 62 562 88 HOH HOH . E 5 HOH A 63 563 28 HOH HOH . E 5 HOH A 64 564 205 HOH HOH . E 5 HOH A 65 565 23 HOH HOH . E 5 HOH A 66 566 12 HOH HOH . E 5 HOH A 67 567 186 HOH HOH . E 5 HOH A 68 568 22 HOH HOH . E 5 HOH A 69 569 55 HOH HOH . E 5 HOH A 70 570 47 HOH HOH . E 5 HOH A 71 571 169 HOH HOH . E 5 HOH A 72 572 109 HOH HOH . E 5 HOH A 73 573 6 HOH HOH . E 5 HOH A 74 574 194 HOH HOH . E 5 HOH A 75 575 83 HOH HOH . E 5 HOH A 76 576 92 HOH HOH . E 5 HOH A 77 577 53 HOH HOH . E 5 HOH A 78 578 36 HOH HOH . E 5 HOH A 79 579 86 HOH HOH . E 5 HOH A 80 580 148 HOH HOH . E 5 HOH A 81 581 57 HOH HOH . E 5 HOH A 82 582 120 HOH HOH . E 5 HOH A 83 583 7 HOH HOH . E 5 HOH A 84 584 62 HOH HOH . E 5 HOH A 85 585 10 HOH HOH . E 5 HOH A 86 586 126 HOH HOH . E 5 HOH A 87 587 31 HOH HOH . E 5 HOH A 88 588 218 HOH HOH . E 5 HOH A 89 589 19 HOH HOH . E 5 HOH A 90 590 241 HOH HOH . E 5 HOH A 91 591 130 HOH HOH . E 5 HOH A 92 592 135 HOH HOH . E 5 HOH A 93 593 9 HOH HOH . E 5 HOH A 94 594 195 HOH HOH . E 5 HOH A 95 595 70 HOH HOH . E 5 HOH A 96 596 3 HOH HOH . E 5 HOH A 97 597 74 HOH HOH . E 5 HOH A 98 598 224 HOH HOH . E 5 HOH A 99 599 179 HOH HOH . E 5 HOH A 100 600 27 HOH HOH . E 5 HOH A 101 601 251 HOH HOH . E 5 HOH A 102 602 233 HOH HOH . E 5 HOH A 103 603 154 HOH HOH . E 5 HOH A 104 604 77 HOH HOH . E 5 HOH A 105 605 103 HOH HOH . E 5 HOH A 106 606 193 HOH HOH . E 5 HOH A 107 607 60 HOH HOH . E 5 HOH A 108 608 144 HOH HOH . E 5 HOH A 109 609 211 HOH HOH . E 5 HOH A 110 610 226 HOH HOH . E 5 HOH A 111 611 125 HOH HOH . E 5 HOH A 112 612 183 HOH HOH . E 5 HOH A 113 613 64 HOH HOH . E 5 HOH A 114 614 119 HOH HOH . E 5 HOH A 115 615 67 HOH HOH . E 5 HOH A 116 616 191 HOH HOH . E 5 HOH A 117 617 51 HOH HOH . E 5 HOH A 118 618 26 HOH HOH . E 5 HOH A 119 619 71 HOH HOH . E 5 HOH A 120 620 231 HOH HOH . E 5 HOH A 121 621 5 HOH HOH . E 5 HOH A 122 622 43 HOH HOH . E 5 HOH A 123 623 141 HOH HOH . E 5 HOH A 124 624 215 HOH HOH . E 5 HOH A 125 625 61 HOH HOH . E 5 HOH A 126 626 118 HOH HOH . E 5 HOH A 127 627 16 HOH HOH . E 5 HOH A 128 628 155 HOH HOH . E 5 HOH A 129 629 2 HOH HOH . E 5 HOH A 130 630 35 HOH HOH . E 5 HOH A 131 631 13 HOH HOH . E 5 HOH A 132 632 162 HOH HOH . E 5 HOH A 133 633 203 HOH HOH . E 5 HOH A 134 634 173 HOH HOH . E 5 HOH A 135 635 1 HOH HOH . E 5 HOH A 136 636 29 HOH HOH . E 5 HOH A 137 637 188 HOH HOH . E 5 HOH A 138 638 121 HOH HOH . E 5 HOH A 139 639 21 HOH HOH . E 5 HOH A 140 640 58 HOH HOH . E 5 HOH A 141 641 20 HOH HOH . E 5 HOH A 142 642 96 HOH HOH . E 5 HOH A 143 643 138 HOH HOH . E 5 HOH A 144 644 117 HOH HOH . E 5 HOH A 145 645 142 HOH HOH . E 5 HOH A 146 646 223 HOH HOH . E 5 HOH A 147 647 123 HOH HOH . E 5 HOH A 148 648 137 HOH HOH . E 5 HOH A 149 649 153 HOH HOH . E 5 HOH A 150 650 171 HOH HOH . E 5 HOH A 151 651 15 HOH HOH . E 5 HOH A 152 652 48 HOH HOH . E 5 HOH A 153 653 37 HOH HOH . E 5 HOH A 154 654 72 HOH HOH . E 5 HOH A 155 655 104 HOH HOH . E 5 HOH A 156 656 79 HOH HOH . E 5 HOH A 157 657 228 HOH HOH . E 5 HOH A 158 658 206 HOH HOH . E 5 HOH A 159 659 182 HOH HOH . E 5 HOH A 160 660 146 HOH HOH . E 5 HOH A 161 661 174 HOH HOH . E 5 HOH A 162 662 204 HOH HOH . E 5 HOH A 163 663 207 HOH HOH . E 5 HOH A 164 664 30 HOH HOH . E 5 HOH A 165 665 111 HOH HOH . E 5 HOH A 166 666 147 HOH HOH . E 5 HOH A 167 667 73 HOH HOH . E 5 HOH A 168 668 234 HOH HOH . E 5 HOH A 169 669 175 HOH HOH . E 5 HOH A 170 670 63 HOH HOH . E 5 HOH A 171 671 134 HOH HOH . E 5 HOH A 172 672 8 HOH HOH . E 5 HOH A 173 673 133 HOH HOH . E 5 HOH A 174 674 69 HOH HOH . E 5 HOH A 175 675 91 HOH HOH . E 5 HOH A 176 676 25 HOH HOH . E 5 HOH A 177 677 238 HOH HOH . E 5 HOH A 178 678 198 HOH HOH . E 5 HOH A 179 679 99 HOH HOH . E 5 HOH A 180 680 56 HOH HOH . E 5 HOH A 181 681 18 HOH HOH . E 5 HOH A 182 682 230 HOH HOH . E 5 HOH A 183 683 105 HOH HOH . E 5 HOH A 184 684 136 HOH HOH . E 5 HOH A 185 685 200 HOH HOH . E 5 HOH A 186 686 24 HOH HOH . E 5 HOH A 187 687 76 HOH HOH . E 5 HOH A 188 688 143 HOH HOH . E 5 HOH A 189 689 225 HOH HOH . E 5 HOH A 190 690 68 HOH HOH . E 5 HOH A 191 691 33 HOH HOH . E 5 HOH A 192 692 243 HOH HOH . E 5 HOH A 193 693 4 HOH HOH . E 5 HOH A 194 694 160 HOH HOH . E 5 HOH A 195 695 122 HOH HOH . E 5 HOH A 196 696 102 HOH HOH . E 5 HOH A 197 697 192 HOH HOH . E 5 HOH A 198 698 40 HOH HOH . E 5 HOH A 199 699 165 HOH HOH . E 5 HOH A 200 700 227 HOH HOH . E 5 HOH A 201 701 166 HOH HOH . E 5 HOH A 202 702 252 HOH HOH . E 5 HOH A 203 703 110 HOH HOH . E 5 HOH A 204 704 196 HOH HOH . E 5 HOH A 205 705 177 HOH HOH . E 5 HOH A 206 706 100 HOH HOH . E 5 HOH A 207 707 222 HOH HOH . E 5 HOH A 208 708 157 HOH HOH . E 5 HOH A 209 709 201 HOH HOH . E 5 HOH A 210 710 247 HOH HOH . E 5 HOH A 211 711 132 HOH HOH . E 5 HOH A 212 712 131 HOH HOH . E 5 HOH A 213 713 90 HOH HOH . E 5 HOH A 214 714 254 HOH HOH . E 5 HOH A 215 715 239 HOH HOH . E 5 HOH A 216 716 75 HOH HOH . E 5 HOH A 217 717 108 HOH HOH . E 5 HOH A 218 718 114 HOH HOH . E 5 HOH A 219 719 49 HOH HOH . E 5 HOH A 220 720 176 HOH HOH . E 5 HOH A 221 721 209 HOH HOH . E 5 HOH A 222 722 39 HOH HOH . E 5 HOH A 223 723 116 HOH HOH . E 5 HOH A 224 724 150 HOH HOH . E 5 HOH A 225 725 172 HOH HOH . E 5 HOH A 226 726 159 HOH HOH . E 5 HOH A 227 727 152 HOH HOH . E 5 HOH A 228 728 185 HOH HOH . E 5 HOH A 229 729 187 HOH HOH . E 5 HOH A 230 730 34 HOH HOH . E 5 HOH A 231 731 190 HOH HOH . E 5 HOH A 232 732 253 HOH HOH . E 5 HOH A 233 733 248 HOH HOH . E 5 HOH A 234 734 168 HOH HOH . E 5 HOH A 235 735 197 HOH HOH . E 5 HOH A 236 736 145 HOH HOH . E 5 HOH A 237 737 255 HOH HOH . E 5 HOH A 238 738 167 HOH HOH . E 5 HOH A 239 739 221 HOH HOH . E 5 HOH A 240 740 180 HOH HOH . E 5 HOH A 241 741 84 HOH HOH . E 5 HOH A 242 742 240 HOH HOH . E 5 HOH A 243 743 216 HOH HOH . E 5 HOH A 244 744 93 HOH HOH . E 5 HOH A 245 745 170 HOH HOH . E 5 HOH A 246 746 38 HOH HOH . E 5 HOH A 247 747 178 HOH HOH . E 5 HOH A 248 748 249 HOH HOH . E 5 HOH A 249 749 181 HOH HOH . E 5 HOH A 250 750 219 HOH HOH . E 5 HOH A 251 751 129 HOH HOH . E 5 HOH A 252 752 210 HOH HOH . E 5 HOH A 253 753 244 HOH HOH . E 5 HOH A 254 754 245 HOH HOH . E 5 HOH A 255 755 80 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S1 DTD . . . B 2 -33.485 25.756 -0.332 1 35.06 ? S1 DTD 401 A 1 HETATM 2 C C1 DTD . . . B 2 -33.687 25.299 -1.905 1 29.87 ? C1 DTD 401 A 1 HETATM 3 C C2 DTD . . . B 2 -33.718 26.575 -2.908 1 37.99 ? C2 DTD 401 A 1 HETATM 4 O O2 DTD . . . B 2 -33.875 26.233 -4.095 1 47.6 ? O2 DTD 401 A 1 HETATM 5 C C3 DTD . . . B 2 -32.22 27.408 -2.77 1 36.24 ? C3 DTD 401 A 1 HETATM 6 O O3 DTD . . . B 2 -32.276 28.335 -3.593 1 45.2 ? O3 DTD 401 A 1 HETATM 7 C C4 DTD . . . B 2 -32.054 27.987 -1.25 1 32.42 ? C4 DTD 401 A 1 HETATM 8 S S4 DTD . . . B 2 -32.135 26.872 -0.031 1 33.22 ? S4 DTD 401 A 1 HETATM 9 H H11 DTD . . . B 2 -34.516 24.801 -1.987 1 35.84 ? H11 DTD 401 A 1 HETATM 10 H H12 DTD . . . B 2 -32.948 24.724 -2.158 1 35.84 ? H12 DTD 401 A 1 HETATM 11 H H21 DTD . . . B 2 -34.438 27.17 -2.644 1 45.58 ? H21 DTD 401 A 1 HETATM 12 H HO2 DTD . . . B 2 -34.562 26.62 -4.413 1 57.12 ? HO2 DTD 401 A 1 HETATM 13 H H31 DTD . . . B 2 -31.486 26.81 -2.982 1 43.49 ? H31 DTD 401 A 1 HETATM 14 H HO3 DTD . . . B 2 -31.582 28.32 -4.085 1 54.24 ? HO3 DTD 401 A 1 HETATM 15 H H41 DTD . . . B 2 -31.194 28.432 -1.191 1 38.91 ? H41 DTD 401 A 1 HETATM 16 H H42 DTD . . . B 2 -32.751 28.644 -1.101 1 38.91 ? H42 DTD 401 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 16 #