data_5LVR
#
_model_server_result.job_id            vzBK-HvX8W_p8v5cUm1o8w 
_model_server_result.datetime_utc      '2024-10-12 16:38:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5lvr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":903}' 
#
_entry.id    5LVR 
#
_exptl.entry_id    5LVR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5LVR 
_cell.length_a            99.659 
_cell.length_b            99.659 
_cell.length_c            100.354 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5LVR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 118 n n 
C1 C2 EDO sing 119 n n 
C1 H11 EDO sing 120 n n 
C1 H12 EDO sing 121 n n 
O1 HO1 EDO sing 122 n n 
C2 O2 EDO sing 123 n n 
C2 H21 EDO sing 124 n n 
C2 H22 EDO sing 125 n n 
O2 HO2 EDO sing 126 n n 
#
_atom_sites.entry_id                     5LVR 
_atom_sites.fract_transf_matrix[1][1]    0.010034 
_atom_sites.fract_transf_matrix[1][2]    0.005793 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011587 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009965 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 EDO A 1 901 3 EDO EDO . 
D 2 EDO A 1 902 4 EDO EDO . 
E 2 EDO A 1 903 5 EDO EDO . 
F 3 78Y A 1 904 1 78Y XXX . 
G 2 EDO B 1 901 2 EDO EDO . 
H 2 EDO B 1 902 6 EDO EDO . 
I 2 EDO B 1 903 7 EDO EDO . 
J 4 DMS B 1 904 1 DMS DMS . 
K 5 HOH A 1 1001 115 HOH HOH . 
K 5 HOH A 2 1002 99 HOH HOH . 
K 5 HOH A 3 1003 107 HOH HOH . 
K 5 HOH A 4 1004 10 HOH HOH . 
K 5 HOH A 5 1005 134 HOH HOH . 
K 5 HOH A 6 1006 4 HOH HOH . 
K 5 HOH A 7 1007 93 HOH HOH . 
K 5 HOH A 8 1008 58 HOH HOH . 
K 5 HOH A 9 1009 106 HOH HOH . 
K 5 HOH A 10 1010 6 HOH HOH . 
K 5 HOH A 11 1011 53 HOH HOH . 
K 5 HOH A 12 1012 100 HOH HOH . 
K 5 HOH A 13 1013 44 HOH HOH . 
K 5 HOH A 14 1014 12 HOH HOH . 
K 5 HOH A 15 1015 35 HOH HOH . 
K 5 HOH A 16 1016 46 HOH HOH . 
K 5 HOH A 17 1017 45 HOH HOH . 
K 5 HOH A 18 1018 28 HOH HOH . 
K 5 HOH A 19 1019 8 HOH HOH . 
K 5 HOH A 20 1020 38 HOH HOH . 
K 5 HOH A 21 1021 55 HOH HOH . 
K 5 HOH A 22 1022 32 HOH HOH . 
K 5 HOH A 23 1023 54 HOH HOH . 
K 5 HOH A 24 1024 59 HOH HOH . 
K 5 HOH A 25 1025 48 HOH HOH . 
K 5 HOH A 26 1026 41 HOH HOH . 
K 5 HOH A 27 1027 105 HOH HOH . 
K 5 HOH A 28 1028 16 HOH HOH . 
K 5 HOH A 29 1029 49 HOH HOH . 
K 5 HOH A 30 1030 24 HOH HOH . 
K 5 HOH A 31 1031 116 HOH HOH . 
K 5 HOH A 32 1032 112 HOH HOH . 
K 5 HOH A 33 1033 101 HOH HOH . 
K 5 HOH A 34 1034 22 HOH HOH . 
K 5 HOH A 35 1035 21 HOH HOH . 
K 5 HOH A 36 1036 108 HOH HOH . 
K 5 HOH A 37 1037 135 HOH HOH . 
K 5 HOH A 38 1038 56 HOH HOH . 
K 5 HOH A 39 1039 118 HOH HOH . 
K 5 HOH A 40 1040 97 HOH HOH . 
K 5 HOH A 41 1041 34 HOH HOH . 
K 5 HOH A 42 1042 104 HOH HOH . 
K 5 HOH A 43 1043 7 HOH HOH . 
K 5 HOH A 44 1044 50 HOH HOH . 
K 5 HOH A 45 1045 113 HOH HOH . 
K 5 HOH A 46 1046 47 HOH HOH . 
K 5 HOH A 47 1047 92 HOH HOH . 
K 5 HOH A 48 1048 96 HOH HOH . 
K 5 HOH A 49 1049 132 HOH HOH . 
K 5 HOH A 50 1050 131 HOH HOH . 
K 5 HOH A 51 1051 94 HOH HOH . 
K 5 HOH A 52 1052 98 HOH HOH . 
K 5 HOH A 53 1053 20 HOH HOH . 
K 5 HOH A 54 1054 130 HOH HOH . 
K 5 HOH A 55 1055 128 HOH HOH . 
K 5 HOH A 56 1056 25 HOH HOH . 
K 5 HOH A 57 1057 102 HOH HOH . 
K 5 HOH A 58 1058 110 HOH HOH . 
K 5 HOH A 59 1059 95 HOH HOH . 
K 5 HOH A 60 1060 72 HOH HOH . 
K 5 HOH A 61 1061 114 HOH HOH . 
K 5 HOH A 62 1062 61 HOH HOH . 
K 5 HOH A 63 1063 13 HOH HOH . 
K 5 HOH A 64 1064 127 HOH HOH . 
L 5 HOH B 1 1001 70 HOH HOH . 
L 5 HOH B 2 1002 138 HOH HOH . 
L 5 HOH B 3 1003 78 HOH HOH . 
L 5 HOH B 4 1004 52 HOH HOH . 
L 5 HOH B 5 1005 62 HOH HOH . 
L 5 HOH B 6 1006 23 HOH HOH . 
L 5 HOH B 7 1007 43 HOH HOH . 
L 5 HOH B 8 1008 91 HOH HOH . 
L 5 HOH B 9 1009 79 HOH HOH . 
L 5 HOH B 10 1010 129 HOH HOH . 
L 5 HOH B 11 1011 63 HOH HOH . 
L 5 HOH B 12 1012 57 HOH HOH . 
L 5 HOH B 13 1013 64 HOH HOH . 
L 5 HOH B 14 1014 40 HOH HOH . 
L 5 HOH B 15 1015 136 HOH HOH . 
L 5 HOH B 16 1016 74 HOH HOH . 
L 5 HOH B 17 1017 39 HOH HOH . 
L 5 HOH B 18 1018 125 HOH HOH . 
L 5 HOH B 19 1019 37 HOH HOH . 
L 5 HOH B 20 1020 124 HOH HOH . 
L 5 HOH B 21 1021 14 HOH HOH . 
L 5 HOH B 22 1022 122 HOH HOH . 
L 5 HOH B 23 1023 26 HOH HOH . 
L 5 HOH B 24 1024 3 HOH HOH . 
L 5 HOH B 25 1025 140 HOH HOH . 
L 5 HOH B 26 1026 29 HOH HOH . 
L 5 HOH B 27 1027 1 HOH HOH . 
L 5 HOH B 28 1028 133 HOH HOH . 
L 5 HOH B 29 1029 11 HOH HOH . 
L 5 HOH B 30 1030 83 HOH HOH . 
L 5 HOH B 31 1031 90 HOH HOH . 
L 5 HOH B 32 1032 18 HOH HOH . 
L 5 HOH B 33 1033 27 HOH HOH . 
L 5 HOH B 34 1034 82 HOH HOH . 
L 5 HOH B 35 1035 19 HOH HOH . 
L 5 HOH B 36 1036 141 HOH HOH . 
L 5 HOH B 37 1037 5 HOH HOH . 
L 5 HOH B 38 1038 123 HOH HOH . 
L 5 HOH B 39 1039 121 HOH HOH . 
L 5 HOH B 40 1040 31 HOH HOH . 
L 5 HOH B 41 1041 119 HOH HOH . 
L 5 HOH B 42 1042 33 HOH HOH . 
L 5 HOH B 43 1043 77 HOH HOH . 
L 5 HOH B 44 1044 87 HOH HOH . 
L 5 HOH B 45 1045 2 HOH HOH . 
L 5 HOH B 46 1046 120 HOH HOH . 
L 5 HOH B 47 1047 126 HOH HOH . 
L 5 HOH B 48 1048 139 HOH HOH . 
L 5 HOH B 49 1049 51 HOH HOH . 
L 5 HOH B 50 1050 73 HOH HOH . 
L 5 HOH B 51 1051 137 HOH HOH . 
L 5 HOH B 52 1052 67 HOH HOH . 
L 5 HOH B 53 1053 86 HOH HOH . 
L 5 HOH B 54 1054 42 HOH HOH . 
L 5 HOH B 55 1055 68 HOH HOH . 
L 5 HOH B 56 1056 30 HOH HOH . 
L 5 HOH B 57 1057 60 HOH HOH . 
L 5 HOH B 58 1058 81 HOH HOH . 
L 5 HOH B 59 1059 36 HOH HOH . 
L 5 HOH B 60 1060 69 HOH HOH . 
L 5 HOH B 61 1061 76 HOH HOH . 
L 5 HOH B 62 1062 103 HOH HOH . 
L 5 HOH B 63 1063 80 HOH HOH . 
L 5 HOH B 64 1064 66 HOH HOH . 
L 5 HOH B 65 1065 111 HOH HOH . 
L 5 HOH B 66 1066 109 HOH HOH . 
L 5 HOH B 67 1067 65 HOH HOH . 
L 5 HOH B 68 1068 75 HOH HOH . 
L 5 HOH B 69 1069 71 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . I 2 -2.206 49.431 63.506 1 70.61 ? C1 EDO 903 B 1 
HETATM 2 O O1 EDO . . . I 2 -1.795 50.171 64.659 1 83.38 ? O1 EDO 903 B 1 
HETATM 3 C C2 EDO . . . I 2 -1.17 48.383 63.119 1 80.55 ? C2 EDO 903 B 1 
HETATM 4 O O2 EDO . . . I 2 -0.483 47.835 64.273 1 75.96 ? O2 EDO 903 B 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           323 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#