data_5LVV
#
_model_server_result.job_id            jTmyxrWtUsFCuu_dM2uEUA 
_model_server_result.datetime_utc      '2024-11-06 15:34:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5lvv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":1204}' 
#
_entry.id    5LVV 
#
_exptl.entry_id    5LVV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5LVV 
_cell.length_a            98.533 
_cell.length_b            98.533 
_cell.length_c            367.2 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5LVV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            OG 
_struct_conn.ptnr1_label_comp_id            SER 
_struct_conn.ptnr1_label_seq_id             10 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             SER 
_struct_conn.ptnr1_auth_seq_id              297 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            C 
_struct_conn.ptnr2_label_atom_id            C1 
_struct_conn.ptnr2_label_comp_id            NAG 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             NAG 
_struct_conn.ptnr2_auth_seq_id              1202 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.228 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 237 n n 
C1 O1 NAG sing 238 n n 
C1 O5 NAG sing 239 n n 
C1 H1 NAG sing 240 n n 
C2 C3 NAG sing 241 n n 
C2 N2 NAG sing 242 n n 
C2 H2 NAG sing 243 n n 
C3 C4 NAG sing 244 n n 
C3 O3 NAG sing 245 n n 
C3 H3 NAG sing 246 n n 
C4 C5 NAG sing 247 n n 
C4 O4 NAG sing 248 n n 
C4 H4 NAG sing 249 n n 
C5 C6 NAG sing 250 n n 
C5 O5 NAG sing 251 n n 
C5 H5 NAG sing 252 n n 
C6 O6 NAG sing 253 n n 
C6 H61 NAG sing 254 n n 
C6 H62 NAG sing 255 n n 
C7 C8 NAG sing 256 n n 
C7 N2 NAG sing 257 n n 
C7 O7 NAG doub 258 n n 
C8 H81 NAG sing 259 n n 
C8 H82 NAG sing 260 n n 
C8 H83 NAG sing 261 n n 
N2 HN2 NAG sing 262 n n 
O1 HO1 NAG sing 263 n n 
O3 HO3 NAG sing 264 n n 
O4 HO4 NAG sing 265 n n 
O6 HO6 NAG sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     5LVV 
_atom_sites.fract_transf_matrix[1][1]    0.010149 
_atom_sites.fract_transf_matrix[1][2]    0.005859 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011719 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002723 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 UDP A 1 1201 1201 UDP UDP . 
C 3 NAG A 1 1202 1202 NAG NAG . 
D 3 NAG A 1 1203 1203 NAG NAG . 
E 3 NAG A 1 1204 1204 NAG NAG . 
F 4 HOH A 1 1301 21 HOH HOH . 
F 4 HOH A 2 1302 25 HOH HOH . 
F 4 HOH A 3 1303 35 HOH HOH . 
F 4 HOH A 4 1304 2 HOH HOH . 
F 4 HOH A 5 1305 19 HOH HOH . 
F 4 HOH A 6 1306 28 HOH HOH . 
F 4 HOH A 7 1307 17 HOH HOH . 
F 4 HOH A 8 1308 18 HOH HOH . 
F 4 HOH A 9 1309 20 HOH HOH . 
F 4 HOH A 10 1310 15 HOH HOH . 
F 4 HOH A 11 1311 10 HOH HOH . 
F 4 HOH A 12 1312 14 HOH HOH . 
F 4 HOH A 13 1313 16 HOH HOH . 
F 4 HOH A 14 1314 33 HOH HOH . 
F 4 HOH A 15 1315 27 HOH HOH . 
F 4 HOH A 16 1316 24 HOH HOH . 
F 4 HOH A 17 1317 40 HOH HOH . 
F 4 HOH A 18 1318 36 HOH HOH . 
F 4 HOH A 19 1319 30 HOH HOH . 
F 4 HOH A 20 1320 11 HOH HOH . 
F 4 HOH A 21 1321 29 HOH HOH . 
F 4 HOH A 22 1322 8 HOH HOH . 
F 4 HOH A 23 1323 23 HOH HOH . 
F 4 HOH A 24 1324 39 HOH HOH . 
F 4 HOH A 25 1325 26 HOH HOH . 
F 4 HOH A 26 1326 34 HOH HOH . 
F 4 HOH A 27 1327 32 HOH HOH . 
F 4 HOH A 28 1328 13 HOH HOH . 
F 4 HOH A 29 1329 3 HOH HOH . 
F 4 HOH A 30 1330 37 HOH HOH . 
F 4 HOH A 31 1331 9 HOH HOH . 
F 4 HOH A 32 1332 5 HOH HOH . 
F 4 HOH A 33 1333 38 HOH HOH . 
F 4 HOH A 34 1334 1 HOH HOH . 
F 4 HOH A 35 1335 4 HOH HOH . 
F 4 HOH A 36 1336 6 HOH HOH . 
F 4 HOH A 37 1337 31 HOH HOH . 
F 4 HOH A 38 1338 22 HOH HOH . 
F 4 HOH A 39 1339 7 HOH HOH . 
F 4 HOH A 40 1340 12 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . E 3 -3.84 45.694 -33.407 1 78.15 ? C1 NAG 1204 A 1 
HETATM 2 C C2 NAG . . . E 3 -3.422 45.08 -34.749 1 84.78 ? C2 NAG 1204 A 1 
HETATM 3 C C3 NAG . . . E 3 -1.889 45.004 -34.71 1 83.83 ? C3 NAG 1204 A 1 
HETATM 4 C C4 NAG . . . E 3 -1.395 46.465 -34.588 1 81.31 ? C4 NAG 1204 A 1 
HETATM 5 C C5 NAG . . . E 3 -1.997 47.229 -33.363 1 79.51 ? C5 NAG 1204 A 1 
HETATM 6 C C6 NAG . . . E 3 -1.732 48.757 -33.271 1 79.99 ? C6 NAG 1204 A 1 
HETATM 7 C C7 NAG . . . E 3 -3.9 42.697 -35.407 1 91.66 ? C7 NAG 1204 A 1 
HETATM 8 C C8 NAG . . . E 3 -5.056 41.724 -35.536 1 89.97 ? C8 NAG 1204 A 1 
HETATM 9 N N2 NAG . . . E 3 -4.252 43.903 -34.99 1 88.87 ? N2 NAG 1204 A 1 
HETATM 10 O O3 NAG . . . E 3 -1.292 44.346 -35.856 1 85.59 ? O3 NAG 1204 A 1 
HETATM 11 O O4 NAG . . . E 3 0.039 46.405 -34.618 1 89.52 ? O4 NAG 1204 A 1 
HETATM 12 O O5 NAG . . . E 3 -3.42 47.056 -33.341 1 73.98 ? O5 NAG 1204 A 1 
HETATM 13 O O6 NAG . . . E 3 -2.797 49.538 -32.634 1 74.14 ? O6 NAG 1204 A 1 
HETATM 14 O O7 NAG . . . E 3 -2.746 42.4 -35.665 1 96.34 ? O7 NAG 1204 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           284 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           14 
#