data_5LVW # _model_server_result.job_id SMAzEMdnVVc5TUWG28sc-A _model_server_result.datetime_utc '2025-07-06 06:37:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5lvw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5LVW # _exptl.entry_id 5LVW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5LVW _cell.length_a 166.6 _cell.length_b 166.6 _cell.length_c 99.66 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LVW _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 83.3 -144.279832 0 3 'crystal symmetry operation' 9_555 -x,-x+y,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 33.22 4 'crystal symmetry operation' 12_545 x,x-y-1,-z+1/3 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 83.3 -144.279832 33.22 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 5LVW _atom_sites.fract_transf_matrix[1][1] 0.006002 _atom_sites.fract_transf_matrix[1][2] 0.003465 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006931 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010034 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 401 398 FAD FAD . C 3 IND A 1 402 399 IND IND . D 4 SO4 A 1 403 400 SO4 SO4 . E 5 HOH A 1 501 413 HOH HOH . E 5 HOH A 2 502 401 HOH HOH . E 5 HOH A 3 503 420 HOH HOH . E 5 HOH A 4 504 406 HOH HOH . E 5 HOH A 5 505 404 HOH HOH . E 5 HOH A 6 506 408 HOH HOH . E 5 HOH A 7 507 409 HOH HOH . E 5 HOH A 8 508 422 HOH HOH . E 5 HOH A 9 509 419 HOH HOH . E 5 HOH A 10 510 414 HOH HOH . E 5 HOH A 11 511 412 HOH HOH . E 5 HOH A 12 512 407 HOH HOH . E 5 HOH A 13 513 403 HOH HOH . E 5 HOH A 14 514 405 HOH HOH . E 5 HOH A 15 515 402 HOH HOH . E 5 HOH A 16 516 411 HOH HOH . E 5 HOH A 17 517 416 HOH HOH . E 5 HOH A 18 518 410 HOH HOH . E 5 HOH A 19 519 415 HOH HOH . E 5 HOH A 20 520 418 HOH HOH . E 5 HOH A 21 521 417 HOH HOH . E 5 HOH A 22 522 421 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FAD . . . B 2 51.05 -47.311 4.191 1 93.59 ? N1 FAD 401 A 1 HETATM 2 C C2 FAD . . . B 2 51.15 -46.604 3.05 1 92.52 ? C2 FAD 401 A 1 HETATM 3 O O2 FAD . . . B 2 50.247 -45.819 2.773 1 91.96 ? O2 FAD 401 A 1 HETATM 4 N N3 FAD . . . B 2 52.166 -46.698 2.202 1 92.69 ? N3 FAD 401 A 1 HETATM 5 C C4 FAD . . . B 2 53.178 -47.518 2.433 1 92.2 ? C4 FAD 401 A 1 HETATM 6 O O4 FAD . . . B 2 54.132 -47.618 1.653 1 86.71 ? O4 FAD 401 A 1 HETATM 7 C C4X FAD . . . B 2 53.154 -48.331 3.652 1 94.46 ? C4X FAD 401 A 1 HETATM 8 N N5 FAD . . . B 2 54.149 -49.177 3.912 1 92.5 ? N5 FAD 401 A 1 HETATM 9 C C5X FAD . . . B 2 54.125 -49.923 5.014 1 86.51 ? C5X FAD 401 A 1 HETATM 10 C C6 FAD . . . B 2 55.201 -50.766 5.208 1 79.62 ? C6 FAD 401 A 1 HETATM 11 C C7 FAD . . . B 2 55.241 -51.561 6.326 1 75.87 ? C7 FAD 401 A 1 HETATM 12 C C7M FAD . . . B 2 56.393 -52.482 6.554 1 74.41 ? C7M FAD 401 A 1 HETATM 13 C C8 FAD . . . B 2 54.144 -51.507 7.3 1 75.7 ? C8 FAD 401 A 1 HETATM 14 C C8M FAD . . . B 2 54.233 -52.385 8.5 1 71.91 ? C8M FAD 401 A 1 HETATM 15 C C9 FAD . . . B 2 53.065 -50.653 7.104 1 80.03 ? C9 FAD 401 A 1 HETATM 16 C C9A FAD . . . B 2 52.993 -49.838 5.982 1 86.76 ? C9A FAD 401 A 1 HETATM 17 N N10 FAD . . . B 2 51.918 -48.938 5.727 1 91.16 ? N10 FAD 401 A 1 HETATM 18 C C10 FAD . . . B 2 52.001 -48.187 4.549 1 94.82 ? C10 FAD 401 A 1 HETATM 19 C C1' FAD . . . B 2 50.703 -48.726 6.543 1 88.36 ? C1' FAD 401 A 1 HETATM 20 C C2' FAD . . . B 2 50.87 -48.568 8.04 1 90.91 ? C2' FAD 401 A 1 HETATM 21 O O2' FAD . . . B 2 50.961 -49.856 8.587 1 96.13 ? O2' FAD 401 A 1 HETATM 22 C C3' FAD . . . B 2 49.664 -47.985 8.741 1 90.27 ? C3' FAD 401 A 1 HETATM 23 O O3' FAD . . . B 2 49.468 -46.653 8.297 1 92.56 ? O3' FAD 401 A 1 HETATM 24 C C4' FAD . . . B 2 49.85 -48.049 10.258 1 96.58 ? C4' FAD 401 A 1 HETATM 25 O O4' FAD . . . B 2 48.86 -48.888 10.853 1 100.12 ? O4' FAD 401 A 1 HETATM 26 C C5' FAD . . . B 2 49.792 -46.713 10.977 1 99.55 ? C5' FAD 401 A 1 HETATM 27 O O5' FAD . . . B 2 49.598 -46.954 12.361 1 103.13 ? O5' FAD 401 A 1 HETATM 28 P P FAD . . . B 2 50.806 -46.984 13.399 1 97.31 ? P FAD 401 A 1 HETATM 29 O O1P FAD . . . B 2 50.481 -48.095 14.34 1 96.78 ? O1P FAD 401 A 1 HETATM 30 O O2P FAD . . . B 2 52.092 -46.995 12.635 1 93.52 ? O2P FAD 401 A 1 HETATM 31 O O3P FAD . . . B 2 50.714 -45.604 14.184 1 89.05 ? O3P FAD 401 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 465 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #