data_5LVW # _model_server_result.job_id fgCentirQv02yY4P99GKhA _model_server_result.datetime_utc '2025-07-06 21:17:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5lvw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5LVW # _exptl.entry_id 5LVW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 117.148 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description INDOLE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5LVW _cell.length_a 166.6 _cell.length_b 166.6 _cell.length_c 99.66 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LVW _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 83.3 -144.279832 0 3 'crystal symmetry operation' 9_555 -x,-x+y,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 33.22 4 'crystal symmetry operation' 12_545 x,x-y-1,-z+1/3 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 83.3 -144.279832 33.22 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C8 H7 N' _chem_comp.formula_weight 117.148 _chem_comp.id IND _chem_comp.mon_nstd_flag . _chem_comp.name INDOLE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 IND sing 264 n y N1 C8 IND sing 265 n y N1 HN1 IND sing 266 n n C2 C3 IND doub 267 n y C2 H2 IND sing 268 n n C3 C9 IND sing 269 n y C3 H3 IND sing 270 n n C4 C5 IND doub 271 n y C4 C9 IND sing 272 n y C4 H4 IND sing 273 n n C5 C6 IND sing 274 n y C5 H5 IND sing 275 n n C6 C7 IND doub 276 n y C6 H6 IND sing 277 n n C7 C8 IND sing 278 n y C7 H7 IND sing 279 n n C8 C9 IND doub 280 n y # _atom_sites.entry_id 5LVW _atom_sites.fract_transf_matrix[1][1] 0.006002 _atom_sites.fract_transf_matrix[1][2] 0.003465 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006931 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010034 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 401 398 FAD FAD . C 3 IND A 1 402 399 IND IND . D 4 SO4 A 1 403 400 SO4 SO4 . E 5 HOH A 1 501 413 HOH HOH . E 5 HOH A 2 502 401 HOH HOH . E 5 HOH A 3 503 420 HOH HOH . E 5 HOH A 4 504 406 HOH HOH . E 5 HOH A 5 505 404 HOH HOH . E 5 HOH A 6 506 408 HOH HOH . E 5 HOH A 7 507 409 HOH HOH . E 5 HOH A 8 508 422 HOH HOH . E 5 HOH A 9 509 419 HOH HOH . E 5 HOH A 10 510 414 HOH HOH . E 5 HOH A 11 511 412 HOH HOH . E 5 HOH A 12 512 407 HOH HOH . E 5 HOH A 13 513 403 HOH HOH . E 5 HOH A 14 514 405 HOH HOH . E 5 HOH A 15 515 402 HOH HOH . E 5 HOH A 16 516 411 HOH HOH . E 5 HOH A 17 517 416 HOH HOH . E 5 HOH A 18 518 410 HOH HOH . E 5 HOH A 19 519 415 HOH HOH . E 5 HOH A 20 520 418 HOH HOH . E 5 HOH A 21 521 417 HOH HOH . E 5 HOH A 22 522 421 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 IND . . . C 3 49.77 -47.334 -1.869 1 123.64 ? N1 IND 402 A 1 HETATM 2 C C2 IND . . . C 3 50.692 -47.32 -0.937 1 120.82 ? C2 IND 402 A 1 HETATM 3 C C3 IND . . . C 3 50.132 -47.742 0.177 1 124.86 ? C3 IND 402 A 1 HETATM 4 C C4 IND . . . C 3 47.909 -48.474 0.694 1 123.18 ? C4 IND 402 A 1 HETATM 5 C C5 IND . . . C 3 46.649 -48.691 0.171 1 117.53 ? C5 IND 402 A 1 HETATM 6 C C6 IND . . . C 3 46.409 -48.434 -1.154 1 120.31 ? C6 IND 402 A 1 HETATM 7 C C7 IND . . . C 3 47.468 -47.966 -1.888 1 123.51 ? C7 IND 402 A 1 HETATM 8 C C8 IND . . . C 3 48.651 -47.773 -1.345 1 125.42 ? C8 IND 402 A 1 HETATM 9 C C9 IND . . . C 3 48.874 -48.027 -0.08 1 125.14 ? C9 IND 402 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 237 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 9 #