data_5LW1
#
_model_server_result.job_id            Inb5CwsvklDYX7kSFpebxg 
_model_server_result.datetime_utc      '2024-11-08 01:41:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5lw1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"FA","auth_seq_id":401}' 
#
_entry.id    5LW1 
#
_exptl.entry_id    5LW1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              267.241 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ADENOSINE 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          97.83 
_cell.angle_gamma         90 
_cell.entry_id            5LW1 
_cell.length_a            219.99 
_cell.length_b            141.76 
_cell.length_c            119.85 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5LW1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA trimeric 3 author_and_software_defined_assembly 2 
PISA tetrameric 4 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,K,L,M,N,O,P,Q,R 1 1 
D,E,F,S,T,U,V,W,X,Y,Z,AA 2 1 
G,H,I,J,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 M N N 
? 6 W N N 
? 6 FA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 J C IVA 1 L IVA 1 1_555 J N VAL 2 L VAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.36 ? 
covale ? covale2 J C VAL 3 L VAL 3 1_555 J N STA 4 L STA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? 
covale ? covale3 J C STA 4 L STA 4 1_555 J N ALA 5 L ALA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.367 ? 
covale ? covale4 J C ALA 5 L ALA 5 1_555 J N STA 6 L STA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.383 ? 
#
_chem_comp.formula           'C10 H13 N5 O4' 
_chem_comp.formula_weight    267.241 
_chem_comp.id                ADN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ADENOSINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O5' C5' ADN sing 1 n n 
O5' HO5' ADN sing 2 n n 
C5' C4' ADN sing 3 n n 
C5' "H5'1" ADN sing 4 n n 
C5' "H5'2" ADN sing 5 n n 
C4' O4' ADN sing 6 n n 
C4' C3' ADN sing 7 n n 
C4' H4' ADN sing 8 n n 
O4' C1' ADN sing 9 n n 
C3' O3' ADN sing 10 n n 
C3' C2' ADN sing 11 n n 
C3' H3' ADN sing 12 n n 
O3' HO3' ADN sing 13 n n 
C2' O2' ADN sing 14 n n 
C2' C1' ADN sing 15 n n 
C2' H2' ADN sing 16 n n 
O2' HO2' ADN sing 17 n n 
C1' N9 ADN sing 18 n n 
C1' H1' ADN sing 19 n n 
N9 C8 ADN sing 20 n y 
N9 C4 ADN sing 21 n y 
C8 N7 ADN doub 22 n y 
C8 H8 ADN sing 23 n n 
N7 C5 ADN sing 24 n y 
C5 C6 ADN sing 25 n y 
C5 C4 ADN doub 26 n y 
C6 N6 ADN sing 27 n n 
C6 N1 ADN doub 28 n y 
N6 HN61 ADN sing 29 n n 
N6 HN62 ADN sing 30 n n 
N1 C2 ADN sing 31 n y 
C2 N3 ADN doub 32 n y 
C2 H2 ADN sing 33 n n 
N3 C4 ADN sing 34 n y 
#
_atom_sites.entry_id                     5LW1 
_atom_sites.fract_transf_matrix[1][1]    0.004546 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000625 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007054 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008422 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
K 5 SO4 A 1 401 5 SO4 SO4 . 
L 5 SO4 A 1 402 19 SO4 SO4 . 
M 6 ADN B 1 401 1 ADN ADN . 
N 5 SO4 B 1 402 3 SO4 SO4 . 
O 5 SO4 B 1 403 13 SO4 SO4 . 
P 5 SO4 B 1 404 18 SO4 SO4 . 
Q 5 SO4 B 1 405 21 SO4 SO4 . 
R 5 SO4 B 1 406 24 SO4 SO4 . 
S 5 SO4 D 1 401 8 SO4 SO4 . 
T 5 SO4 D 1 402 10 SO4 SO4 . 
U 5 SO4 D 1 403 14 SO4 SO4 . 
V 5 SO4 D 1 404 15 SO4 SO4 . 
W 6 ADN E 1 401 3 ADN ADN . 
X 5 SO4 E 1 402 2 SO4 SO4 . 
Y 5 SO4 E 1 403 9 SO4 SO4 . 
Z 5 SO4 E 1 404 20 SO4 SO4 . 
AA 5 SO4 E 1 405 22 SO4 SO4 . 
BA 5 SO4 G 1 401 6 SO4 SO4 . 
CA 5 SO4 G 1 402 11 SO4 SO4 . 
DA 5 SO4 G 1 403 12 SO4 SO4 . 
EA 5 SO4 G 1 404 16 SO4 SO4 . 
FA 6 ADN H 1 401 2 ADN ADN . 
GA 5 SO4 H 1 402 1 SO4 SO4 . 
HA 5 SO4 H 1 403 7 SO4 SO4 . 
IA 5 SO4 H 1 404 17 SO4 SO4 . 
JA 5 SO4 H 1 405 23 SO4 SO4 . 
KA 5 SO4 I 1 201 4 SO4 SO4 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O5' ADN . . . FA 6 239.814 -10.509 -16.655 1 69.7 ? O5' ADN 401 H 1 
HETATM 2 C C5' ADN . . . FA 6 238.913 -11.568 -16.947 1 75.39 ? C5' ADN 401 H 1 
HETATM 3 C C4' ADN . . . FA 6 238.051 -11.245 -18.141 1 69.23 ? C4' ADN 401 H 1 
HETATM 4 O O4' ADN . . . FA 6 237.572 -9.881 -18.039 1 63.12 ? O4' ADN 401 H 1 
HETATM 5 C C3' ADN . . . FA 6 238.748 -11.298 -19.493 1 69.78 ? C3' ADN 401 H 1 
HETATM 6 O O3' ADN . . . FA 6 238.822 -12.611 -20.02 1 77.09 ? O3' ADN 401 H 1 
HETATM 7 C C2' ADN . . . FA 6 237.917 -10.347 -20.344 1 61.9 ? C2' ADN 401 H 1 
HETATM 8 O O2' ADN . . . FA 6 236.742 -10.989 -20.816 1 65.73 ? O2' ADN 401 H 1 
HETATM 9 C C1' ADN . . . FA 6 237.513 -9.289 -19.318 1 66.52 ? C1' ADN 401 H 1 
HETATM 10 N N9 ADN . . . FA 6 238.413 -8.121 -19.332 1 70.97 ? N9 ADN 401 H 1 
HETATM 11 C C8 ADN . . . FA 6 239.391 -7.813 -18.426 1 70.7 ? C8 ADN 401 H 1 
HETATM 12 N N7 ADN . . . FA 6 239.962 -6.67 -18.806 1 69.94 ? N7 ADN 401 H 1 
HETATM 13 C C5 ADN . . . FA 6 239.354 -6.257 -19.936 1 72.14 ? C5 ADN 401 H 1 
HETATM 14 C C6 ADN . . . FA 6 239.542 -5.166 -20.733 1 70.81 ? C6 ADN 401 H 1 
HETATM 15 N N6 ADN . . . FA 6 240.462 -3.972 -20.736 1 63.12 ? N6 ADN 401 H 1 
HETATM 16 N N1 ADN . . . FA 6 238.794 -4.999 -21.8 1 77.15 ? N1 ADN 401 H 1 
HETATM 17 C C2 ADN . . . FA 6 237.837 -5.911 -22.109 1 78.41 ? C2 ADN 401 H 1 
HETATM 18 N N3 ADN . . . FA 6 237.65 -6.997 -21.315 1 75.65 ? N3 ADN 401 H 1 
HETATM 19 C C4 ADN . . . FA 6 238.392 -7.167 -20.252 1 73.59 ? C4 ADN 401 H 1 
#
_model_server_stats.io_time_ms              44 
_model_server_stats.parse_time_ms           26 
_model_server_stats.create_model_time_ms    26 
_model_server_stats.query_time_ms           330 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           19 
#