data_5LW9
#
_model_server_result.job_id            xDcmp_XmUyTXcPYXiM8wMQ 
_model_server_result.datetime_utc      '2024-11-05 05:33:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5lw9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":803}' 
#
_entry.id    5LW9 
#
_exptl.entry_id    5LW9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5LW9 
_cell.length_a            142.96 
_cell.length_b            142.96 
_cell.length_c            152.47 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5LW9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 417 A CYS 708 1_555 A SG CYS 434 A CYS 725 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
metalc ? metalc1 A O LEU 67 A LEU 90 1_555 C MN MN . A MN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.778 ? 
metalc ? metalc2 A OD1 ASN 68 A ASN 91 1_555 C MN MN . A MN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? 
metalc ? metalc3 A NE2 HIS 208 A HIS 499 1_555 J MN MN . A MN 809 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? 
metalc ? metalc4 A OE2 GLU 210 A GLU 501 1_555 J MN MN . A MN 809 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
metalc ? metalc5 A NE2 HIS 296 A HIS 587 1_555 J MN MN . A MN 809 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? 
metalc ? metalc6 A SG CYS 401 A CYS 692 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? 
metalc ? metalc7 A SG CYS 404 A CYS 695 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? 
metalc ? metalc8 A SG CYS 424 A CYS 715 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? 
metalc ? metalc9 A ND1 HIS 427 A HIS 718 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
metalc ? metalc10 I N3 5UJ . A 5UJ 808 1_555 J MN MN . A MN 809 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? 
metalc ? metalc11 I N2 5UJ . A 5UJ 808 1_555 J MN MN . A MN 809 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? 
metalc ? metalc12 J MN MN . A MN 809 1_555 K O HOH . A HOH 956 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 150 n n 
C1 C2 EDO sing 151 n n 
C1 H11 EDO sing 152 n n 
C1 H12 EDO sing 153 n n 
O1 HO1 EDO sing 154 n n 
C2 O2 EDO sing 155 n n 
C2 H21 EDO sing 156 n n 
C2 H22 EDO sing 157 n n 
O2 HO2 EDO sing 158 n n 
#
_atom_sites.entry_id                     5LW9 
_atom_sites.fract_transf_matrix[1][1]    0.006995 
_atom_sites.fract_transf_matrix[1][2]    0.004039 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008077 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006559 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 801 800 ZN ZN . 
C 3 MN A 1 802 801 MN MN . 
D 4 EDO A 1 803 1 EDO EDO . 
E 4 EDO A 1 804 2 EDO EDO . 
F 5 DMS A 1 805 1 DMS DMS . 
G 5 DMS A 1 806 2 DMS DMS . 
H 5 DMS A 1 807 3 DMS DMS . 
I 6 5UJ A 1 808 1 5UJ XXX . 
J 3 MN A 1 809 1 MN MN . 
K 7 HOH A 1 901 182 HOH HOH . 
K 7 HOH A 2 902 156 HOH HOH . 
K 7 HOH A 3 903 185 HOH HOH . 
K 7 HOH A 4 904 178 HOH HOH . 
K 7 HOH A 5 905 138 HOH HOH . 
K 7 HOH A 6 906 141 HOH HOH . 
K 7 HOH A 7 907 168 HOH HOH . 
K 7 HOH A 8 908 176 HOH HOH . 
K 7 HOH A 9 909 139 HOH HOH . 
K 7 HOH A 10 910 77 HOH HOH . 
K 7 HOH A 11 911 31 HOH HOH . 
K 7 HOH A 12 912 9 HOH HOH . 
K 7 HOH A 13 913 53 HOH HOH . 
K 7 HOH A 14 914 166 HOH HOH . 
K 7 HOH A 15 915 149 HOH HOH . 
K 7 HOH A 16 916 165 HOH HOH . 
K 7 HOH A 17 917 47 HOH HOH . 
K 7 HOH A 18 918 122 HOH HOH . 
K 7 HOH A 19 919 3 HOH HOH . 
K 7 HOH A 20 920 98 HOH HOH . 
K 7 HOH A 21 921 190 HOH HOH . 
K 7 HOH A 22 922 150 HOH HOH . 
K 7 HOH A 23 923 12 HOH HOH . 
K 7 HOH A 24 924 10 HOH HOH . 
K 7 HOH A 25 925 285 HOH HOH . 
K 7 HOH A 26 926 7 HOH HOH . 
K 7 HOH A 27 927 13 HOH HOH . 
K 7 HOH A 28 928 119 HOH HOH . 
K 7 HOH A 29 929 16 HOH HOH . 
K 7 HOH A 30 930 42 HOH HOH . 
K 7 HOH A 31 931 27 HOH HOH . 
K 7 HOH A 32 932 189 HOH HOH . 
K 7 HOH A 33 933 21 HOH HOH . 
K 7 HOH A 34 934 2 HOH HOH . 
K 7 HOH A 35 935 4 HOH HOH . 
K 7 HOH A 36 936 23 HOH HOH . 
K 7 HOH A 37 937 111 HOH HOH . 
K 7 HOH A 38 938 280 HOH HOH . 
K 7 HOH A 39 939 6 HOH HOH . 
K 7 HOH A 40 940 30 HOH HOH . 
K 7 HOH A 41 941 86 HOH HOH . 
K 7 HOH A 42 942 155 HOH HOH . 
K 7 HOH A 43 943 22 HOH HOH . 
K 7 HOH A 44 944 14 HOH HOH . 
K 7 HOH A 45 945 158 HOH HOH . 
K 7 HOH A 46 946 143 HOH HOH . 
K 7 HOH A 47 947 49 HOH HOH . 
K 7 HOH A 48 948 140 HOH HOH . 
K 7 HOH A 49 949 125 HOH HOH . 
K 7 HOH A 50 950 102 HOH HOH . 
K 7 HOH A 51 951 198 HOH HOH . 
K 7 HOH A 52 952 5 HOH HOH . 
K 7 HOH A 53 953 11 HOH HOH . 
K 7 HOH A 54 954 43 HOH HOH . 
K 7 HOH A 55 955 87 HOH HOH . 
K 7 HOH A 56 956 137 HOH HOH . 
K 7 HOH A 57 957 36 HOH HOH . 
K 7 HOH A 58 958 45 HOH HOH . 
K 7 HOH A 59 959 183 HOH HOH . 
K 7 HOH A 60 960 59 HOH HOH . 
K 7 HOH A 61 961 8 HOH HOH . 
K 7 HOH A 62 962 1 HOH HOH . 
K 7 HOH A 63 963 71 HOH HOH . 
K 7 HOH A 64 964 112 HOH HOH . 
K 7 HOH A 65 965 148 HOH HOH . 
K 7 HOH A 66 966 26 HOH HOH . 
K 7 HOH A 67 967 205 HOH HOH . 
K 7 HOH A 68 968 82 HOH HOH . 
K 7 HOH A 69 969 48 HOH HOH . 
K 7 HOH A 70 970 17 HOH HOH . 
K 7 HOH A 71 971 209 HOH HOH . 
K 7 HOH A 72 972 167 HOH HOH . 
K 7 HOH A 73 973 142 HOH HOH . 
K 7 HOH A 74 974 19 HOH HOH . 
K 7 HOH A 75 975 24 HOH HOH . 
K 7 HOH A 76 976 15 HOH HOH . 
K 7 HOH A 77 977 68 HOH HOH . 
K 7 HOH A 78 978 50 HOH HOH . 
K 7 HOH A 79 979 152 HOH HOH . 
K 7 HOH A 80 980 51 HOH HOH . 
K 7 HOH A 81 981 256 HOH HOH . 
K 7 HOH A 82 982 32 HOH HOH . 
K 7 HOH A 83 983 76 HOH HOH . 
K 7 HOH A 84 984 41 HOH HOH . 
K 7 HOH A 85 985 46 HOH HOH . 
K 7 HOH A 86 986 276 HOH HOH . 
K 7 HOH A 87 987 44 HOH HOH . 
K 7 HOH A 88 988 131 HOH HOH . 
K 7 HOH A 89 989 90 HOH HOH . 
K 7 HOH A 90 990 25 HOH HOH . 
K 7 HOH A 91 991 191 HOH HOH . 
K 7 HOH A 92 992 174 HOH HOH . 
K 7 HOH A 93 993 93 HOH HOH . 
K 7 HOH A 94 994 94 HOH HOH . 
K 7 HOH A 95 995 169 HOH HOH . 
K 7 HOH A 96 996 136 HOH HOH . 
K 7 HOH A 97 997 63 HOH HOH . 
K 7 HOH A 98 998 200 HOH HOH . 
K 7 HOH A 99 999 208 HOH HOH . 
K 7 HOH A 100 1000 283 HOH HOH . 
K 7 HOH A 101 1001 79 HOH HOH . 
K 7 HOH A 102 1002 160 HOH HOH . 
K 7 HOH A 103 1003 37 HOH HOH . 
K 7 HOH A 104 1004 66 HOH HOH . 
K 7 HOH A 105 1005 242 HOH HOH . 
K 7 HOH A 106 1006 153 HOH HOH . 
K 7 HOH A 107 1007 201 HOH HOH . 
K 7 HOH A 108 1008 38 HOH HOH . 
K 7 HOH A 109 1009 300 HOH HOH . 
K 7 HOH A 110 1010 109 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . D 4 57.821 62.867 3.13 0.9 47.41 ? C1 EDO 803 A 1 
HETATM 2 O O1 EDO . . . D 4 56.949 61.791 3.557 0.9 43.34 ? O1 EDO 803 A 1 
HETATM 3 C C2 EDO . . . D 4 57.691 64.095 4.041 0.9 59.16 ? C2 EDO 803 A 1 
HETATM 4 O O2 EDO . . . D 4 57.863 63.793 5.449 0.9 38.44 ? O2 EDO 803 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           278 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           4 
#