data_5LWB
#
_model_server_result.job_id            ZBjvipoca--6WDz0HZnFxg 
_model_server_result.datetime_utc      '2025-02-05 14:13:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5lwb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":808}' 
#
_entry.id    5LWB 
#
_exptl.entry_id    5LWB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              78.133 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIMETHYL SULFOXIDE' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5LWB 
_cell.length_a            142.36 
_cell.length_b            142.36 
_cell.length_c            151.54 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5LWB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 H N N 
? 5 I N N 
? 5 J N N 
? 5 K N N 
? 5 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 415 A CYS 706 1_555 A SG CYS 432 A CYS 723 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? 
disulf ? disulf2 A SG CYS 417 A CYS 708 1_555 A SG CYS 434 A CYS 725 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
metalc ? metalc1 A ND2 ASN 68 A ASN 91 1_555 C MN MN . A MN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? 
metalc ? metalc2 A O LEU 122 A LEU 413 1_555 C MN MN . A MN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.645 ? 
metalc ? metalc3 A O THR 125 A THR 416 1_555 C MN MN . A MN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.683 ? 
metalc ? metalc4 A NE2 HIS 208 A HIS 499 1_555 M MN MN . A MN 812 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? 
metalc ? metalc5 A OE2 GLU 210 A GLU 501 1_555 M MN MN . A MN 812 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? 
metalc ? metalc6 A NE2 HIS 296 A HIS 587 1_555 M MN MN . A MN 812 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? 
metalc ? metalc7 A SG CYS 401 A CYS 692 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? 
metalc ? metalc8 A SG CYS 404 A CYS 695 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? 
metalc ? metalc9 A SG CYS 424 A CYS 715 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? 
metalc ? metalc10 A ND1 HIS 427 A HIS 718 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? 
metalc ? metalc11 C MN MN . A MN 802 1_555 P O HOH . A HOH 969 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? 
metalc ? metalc12 M MN MN . A MN 812 1_555 O N3 79H . A 79H 814 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? 
metalc ? metalc13 M MN MN . A MN 812 1_555 P O HOH . A HOH 910 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? 
metalc ? metalc14 M MN MN . A MN 812 1_555 P O HOH . A HOH 928 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? 
#
_chem_comp.formula           'C2 H6 O S' 
_chem_comp.formula_weight    78.133 
_chem_comp.id                DMS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIMETHYL SULFOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O DMS doub 131 n n 
S C1 DMS sing 132 n n 
S C2 DMS sing 133 n n 
C1 H11 DMS sing 134 n n 
C1 H12 DMS sing 135 n n 
C1 H13 DMS sing 136 n n 
C2 H21 DMS sing 137 n n 
C2 H22 DMS sing 138 n n 
C2 H23 DMS sing 139 n n 
#
_atom_sites.entry_id                     5LWB 
_atom_sites.fract_transf_matrix[1][1]    0.007024 
_atom_sites.fract_transf_matrix[1][2]    0.004056 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008111 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006599 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 801 800 ZN ZN . 
C 3 MN A 1 802 801 MN MN . 
D 4 EDO A 1 803 1 EDO EDO . 
E 4 EDO A 1 804 2 EDO EDO . 
F 4 EDO A 1 805 3 EDO EDO . 
G 4 EDO A 1 806 4 EDO EDO . 
H 5 DMS A 1 807 1 DMS DMS . 
I 5 DMS A 1 808 2 DMS DMS . 
J 5 DMS A 1 809 3 DMS DMS . 
K 5 DMS A 1 810 4 DMS DMS . 
L 5 DMS A 1 811 5 DMS DMS . 
M 3 MN A 1 812 1 MN MN . 
N 3 MN A 1 813 2 MN MN . 
O 6 79H A 1 814 1 79H 444 . 
P 7 HOH A 1 901 96 HOH HOH . 
P 7 HOH A 2 902 46 HOH HOH . 
P 7 HOH A 3 903 51 HOH HOH . 
P 7 HOH A 4 904 58 HOH HOH . 
P 7 HOH A 5 905 33 HOH HOH . 
P 7 HOH A 6 906 81 HOH HOH . 
P 7 HOH A 7 907 134 HOH HOH . 
P 7 HOH A 8 908 91 HOH HOH . 
P 7 HOH A 9 909 11 HOH HOH . 
P 7 HOH A 10 910 29 HOH HOH . 
P 7 HOH A 11 911 40 HOH HOH . 
P 7 HOH A 12 912 80 HOH HOH . 
P 7 HOH A 13 913 38 HOH HOH . 
P 7 HOH A 14 914 97 HOH HOH . 
P 7 HOH A 15 915 44 HOH HOH . 
P 7 HOH A 16 916 41 HOH HOH . 
P 7 HOH A 17 917 88 HOH HOH . 
P 7 HOH A 18 918 2 HOH HOH . 
P 7 HOH A 19 919 121 HOH HOH . 
P 7 HOH A 20 920 87 HOH HOH . 
P 7 HOH A 21 921 89 HOH HOH . 
P 7 HOH A 22 922 112 HOH HOH . 
P 7 HOH A 23 923 65 HOH HOH . 
P 7 HOH A 24 924 17 HOH HOH . 
P 7 HOH A 25 925 71 HOH HOH . 
P 7 HOH A 26 926 43 HOH HOH . 
P 7 HOH A 27 927 47 HOH HOH . 
P 7 HOH A 28 928 3 HOH HOH . 
P 7 HOH A 29 929 27 HOH HOH . 
P 7 HOH A 30 930 148 HOH HOH . 
P 7 HOH A 31 931 59 HOH HOH . 
P 7 HOH A 32 932 117 HOH HOH . 
P 7 HOH A 33 933 135 HOH HOH . 
P 7 HOH A 34 934 22 HOH HOH . 
P 7 HOH A 35 935 24 HOH HOH . 
P 7 HOH A 36 936 1 HOH HOH . 
P 7 HOH A 37 937 52 HOH HOH . 
P 7 HOH A 38 938 53 HOH HOH . 
P 7 HOH A 39 939 110 HOH HOH . 
P 7 HOH A 40 940 45 HOH HOH . 
P 7 HOH A 41 941 131 HOH HOH . 
P 7 HOH A 42 942 25 HOH HOH . 
P 7 HOH A 43 943 39 HOH HOH . 
P 7 HOH A 44 944 18 HOH HOH . 
P 7 HOH A 45 945 56 HOH HOH . 
P 7 HOH A 46 946 32 HOH HOH . 
P 7 HOH A 47 947 16 HOH HOH . 
P 7 HOH A 48 948 19 HOH HOH . 
P 7 HOH A 49 949 84 HOH HOH . 
P 7 HOH A 50 950 8 HOH HOH . 
P 7 HOH A 51 951 13 HOH HOH . 
P 7 HOH A 52 952 21 HOH HOH . 
P 7 HOH A 53 953 10 HOH HOH . 
P 7 HOH A 54 954 64 HOH HOH . 
P 7 HOH A 55 955 6 HOH HOH . 
P 7 HOH A 56 956 14 HOH HOH . 
P 7 HOH A 57 957 30 HOH HOH . 
P 7 HOH A 58 958 54 HOH HOH . 
P 7 HOH A 59 959 7 HOH HOH . 
P 7 HOH A 60 960 62 HOH HOH . 
P 7 HOH A 61 961 86 HOH HOH . 
P 7 HOH A 62 962 36 HOH HOH . 
P 7 HOH A 63 963 66 HOH HOH . 
P 7 HOH A 64 964 113 HOH HOH . 
P 7 HOH A 65 965 95 HOH HOH . 
P 7 HOH A 66 966 72 HOH HOH . 
P 7 HOH A 67 967 34 HOH HOH . 
P 7 HOH A 68 968 77 HOH HOH . 
P 7 HOH A 69 969 123 HOH HOH . 
P 7 HOH A 70 970 42 HOH HOH . 
P 7 HOH A 71 971 31 HOH HOH . 
P 7 HOH A 72 972 61 HOH HOH . 
P 7 HOH A 73 973 48 HOH HOH . 
P 7 HOH A 74 974 73 HOH HOH . 
P 7 HOH A 75 975 145 HOH HOH . 
P 7 HOH A 76 976 28 HOH HOH . 
P 7 HOH A 77 977 120 HOH HOH . 
P 7 HOH A 78 978 93 HOH HOH . 
P 7 HOH A 79 979 50 HOH HOH . 
P 7 HOH A 80 980 23 HOH HOH . 
P 7 HOH A 81 981 102 HOH HOH . 
P 7 HOH A 82 982 63 HOH HOH . 
P 7 HOH A 83 983 35 HOH HOH . 
P 7 HOH A 84 984 132 HOH HOH . 
P 7 HOH A 85 985 79 HOH HOH . 
P 7 HOH A 86 986 128 HOH HOH . 
P 7 HOH A 87 987 144 HOH HOH . 
P 7 HOH A 88 988 60 HOH HOH . 
P 7 HOH A 89 989 92 HOH HOH . 
P 7 HOH A 90 990 55 HOH HOH . 
P 7 HOH A 91 991 5 HOH HOH . 
P 7 HOH A 92 992 114 HOH HOH . 
P 7 HOH A 93 993 20 HOH HOH . 
P 7 HOH A 94 994 104 HOH HOH . 
P 7 HOH A 95 995 75 HOH HOH . 
P 7 HOH A 96 996 12 HOH HOH . 
P 7 HOH A 97 997 98 HOH HOH . 
P 7 HOH A 98 998 111 HOH HOH . 
P 7 HOH A 99 999 9 HOH HOH . 
P 7 HOH A 100 1000 115 HOH HOH . 
P 7 HOH A 101 1001 100 HOH HOH . 
P 7 HOH A 102 1002 107 HOH HOH . 
P 7 HOH A 103 1003 103 HOH HOH . 
P 7 HOH A 104 1004 101 HOH HOH . 
P 7 HOH A 105 1005 119 HOH HOH . 
P 7 HOH A 106 1006 4 HOH HOH . 
P 7 HOH A 107 1007 136 HOH HOH . 
P 7 HOH A 108 1008 15 HOH HOH . 
P 7 HOH A 109 1009 74 HOH HOH . 
P 7 HOH A 110 1010 37 HOH HOH . 
P 7 HOH A 111 1011 143 HOH HOH . 
P 7 HOH A 112 1012 129 HOH HOH . 
P 7 HOH A 113 1013 130 HOH HOH . 
P 7 HOH A 114 1014 70 HOH HOH . 
P 7 HOH A 115 1015 67 HOH HOH . 
P 7 HOH A 116 1016 26 HOH HOH . 
P 7 HOH A 117 1017 83 HOH HOH . 
P 7 HOH A 118 1018 49 HOH HOH . 
P 7 HOH A 119 1019 133 HOH HOH . 
P 7 HOH A 120 1020 82 HOH HOH . 
P 7 HOH A 121 1021 151 HOH HOH . 
P 7 HOH A 122 1022 125 HOH HOH . 
P 7 HOH A 123 1023 85 HOH HOH . 
P 7 HOH A 124 1024 124 HOH HOH . 
P 7 HOH A 125 1025 99 HOH HOH . 
P 7 HOH A 126 1026 142 HOH HOH . 
P 7 HOH A 127 1027 152 HOH HOH . 
P 7 HOH A 128 1028 69 HOH HOH . 
P 7 HOH A 129 1029 127 HOH HOH . 
P 7 HOH A 130 1030 153 HOH HOH . 
P 7 HOH A 131 1031 139 HOH HOH . 
P 7 HOH A 132 1032 150 HOH HOH . 
P 7 HOH A 133 1033 108 HOH HOH . 
P 7 HOH A 134 1034 122 HOH HOH . 
P 7 HOH A 135 1035 116 HOH HOH . 
P 7 HOH A 136 1036 76 HOH HOH . 
P 7 HOH A 137 1037 149 HOH HOH . 
P 7 HOH A 138 1038 137 HOH HOH . 
P 7 HOH A 139 1039 126 HOH HOH . 
P 7 HOH A 140 1040 140 HOH HOH . 
P 7 HOH A 141 1041 138 HOH HOH . 
P 7 HOH A 142 1042 68 HOH HOH . 
P 7 HOH A 143 1043 106 HOH HOH . 
P 7 HOH A 144 1044 78 HOH HOH . 
P 7 HOH A 145 1045 147 HOH HOH . 
P 7 HOH A 146 1046 94 HOH HOH . 
P 7 HOH A 147 1047 109 HOH HOH . 
P 7 HOH A 148 1048 105 HOH HOH . 
P 7 HOH A 149 1049 146 HOH HOH . 
P 7 HOH A 150 1050 90 HOH HOH . 
P 7 HOH A 151 1051 141 HOH HOH . 
P 7 HOH A 152 1052 118 HOH HOH . 
P 7 HOH A 153 1053 57 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S DMS . . . I 5 80.437 64.555 15.078 1 128.02 ? S DMS 808 A 1 
HETATM 2 O O DMS . . . I 5 81.55 64.5 14.083 1 132.15 ? O DMS 808 A 1 
HETATM 3 C C1 DMS . . . I 5 79.735 66.219 15.093 1 49.69 ? C1 DMS 808 A 1 
HETATM 4 C C2 DMS . . . I 5 78.999 63.627 14.476 1 86.88 ? C2 DMS 808 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           4 
#