data_5LWE # _model_server_result.job_id RQP4mGqb42mbAM6AHIAZFQ _model_server_result.datetime_utc '2024-11-26 10:50:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5lwe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"U","auth_seq_id":401}' # _entry.id 5LWE # _exptl.entry_id 5LWE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 444.931 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Vercirnon _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 74.02 _cell.angle_beta 64.72 _cell.angle_gamma 62.29 _cell.entry_id 5LWE _cell.length_a 62.571 _cell.length_b 66.197 _cell.length_c 68.424 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LWE _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,JA 1 1 B,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,KA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 97 A CYS 119 1_555 A SG CYS 176 A CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf2 B SG CYS 16 B CYS 38 1_555 B SG CYS 267 B CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 L C17 OLA . A OLA 410 1_555 FA C17 OLA . B OLA 412 1_556 ? ? ? ? ? ? ? ? ? ? ? ? 1.491 ? # _chem_comp.formula 'C22 H21 Cl N2 O4 S' _chem_comp.formula_weight 444.931 _chem_comp.id 79K _chem_comp.mon_nstd_flag . _chem_comp.name Vercirnon _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O22 C21 79K doub 1 n n C24 C25 79K doub 2 n y C24 C23 79K sing 3 n y CL1 C18 79K sing 4 n n C25 N26 79K sing 5 n y C19 C18 79K doub 6 n y C19 C20 79K sing 7 n y C21 C23 79K sing 8 n n C21 C20 79K sing 9 n n C23 C28 79K doub 10 n y N26 O29 79K sing 11 n n N26 C27 79K doub 12 n y C18 C17 79K sing 13 n y C20 C15 79K doub 14 n y C28 C27 79K sing 15 n y C17 C16 79K doub 16 n y C15 C16 79K sing 17 n y C15 N14 79K sing 18 n n N14 S11 79K sing 19 n n C03 C02 79K sing 20 n n S11 C08 79K sing 21 n n S11 O13 79K doub 22 n n S11 O12 79K doub 23 n n C09 C08 79K doub 24 n y C09 C10 79K sing 25 n y C08 C07 79K sing 26 n y C10 C05 79K doub 27 n y C07 C06 79K doub 28 n y C01 C02 79K sing 29 n n C05 C06 79K sing 30 n y C05 C02 79K sing 31 n n C02 C04 79K sing 32 n n C01 H1 79K sing 33 n n C01 H2 79K sing 34 n n C01 H3 79K sing 35 n n C03 H4 79K sing 36 n n C03 H5 79K sing 37 n n C03 H6 79K sing 38 n n C04 H7 79K sing 39 n n C04 H8 79K sing 40 n n C04 H9 79K sing 41 n n C06 H10 79K sing 42 n n C07 H11 79K sing 43 n n C09 H12 79K sing 44 n n C10 H13 79K sing 45 n n C16 H14 79K sing 46 n n C17 H15 79K sing 47 n n C19 H16 79K sing 48 n n C24 H17 79K sing 49 n n C25 H18 79K sing 50 n n C27 H19 79K sing 51 n n C28 H20 79K sing 52 n n N14 H21 79K sing 53 n n # _atom_sites.entry_id 5LWE _atom_sites.fract_transf_matrix[1][1] 0.015982 _atom_sites.fract_transf_matrix[1][2] -0.008393 _atom_sites.fract_transf_matrix[1][3] -0.006774 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017063 _atom_sites.fract_transf_matrix[2][3] -0.001643 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016237 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 79K A 1 401 1 79K HTL . D 3 OLA A 1 402 1 OLA OLA . E 3 OLA A 1 403 2 OLA OLA . F 3 OLA A 1 404 3 OLA OLA . G 3 OLA A 1 405 8 OLA OLA . H 3 OLA A 1 406 9 OLA OLA . I 3 OLA A 1 407 10 OLA OLA . J 3 OLA A 1 408 11 OLA OLA . K 3 OLA A 1 409 14 OLA OLA . L 3 OLA A 1 410 15 OLA OLA . M 3 OLA A 1 411 16 OLA OLA . N 3 OLA A 1 412 19 OLA OLA . O 3 OLA A 1 413 20 OLA OLA . P 3 OLA A 1 414 23 OLA OLA . Q 3 OLA A 1 415 24 OLA OLA . R 3 OLA A 1 416 28 OLA OLA . S 4 CLR A 1 417 1 CLR CLR . T 5 MLI A 1 418 1 MLI MLI . U 2 79K B 1 401 2 79K HTL . V 3 OLA B 1 402 4 OLA OLA . W 3 OLA B 1 403 5 OLA OLA . X 3 OLA B 1 404 6 OLA OLA . Y 3 OLA B 1 405 7 OLA OLA . Z 3 OLA B 1 406 12 OLA OLA . AA 3 OLA B 1 407 13 OLA OLA . BA 3 OLA B 1 408 17 OLA OLA . CA 3 OLA B 1 409 18 OLA OLA . DA 3 OLA B 1 410 21 OLA OLA . EA 3 OLA B 1 411 22 OLA OLA . FA 3 OLA B 1 412 25 OLA OLA . GA 3 OLA B 1 413 26 OLA OLA . HA 3 OLA B 1 414 27 OLA OLA . IA 5 MLI B 1 415 2 MLI MLI . JA 6 HOH A 1 501 2 HOH HOH . JA 6 HOH A 2 502 11 HOH HOH . JA 6 HOH A 3 503 8 HOH HOH . JA 6 HOH A 4 504 27 HOH HOH . JA 6 HOH A 5 505 24 HOH HOH . JA 6 HOH A 6 506 1 HOH HOH . JA 6 HOH A 7 507 13 HOH HOH . JA 6 HOH A 8 508 9 HOH HOH . JA 6 HOH A 9 509 10 HOH HOH . JA 6 HOH A 10 510 18 HOH HOH . JA 6 HOH A 11 511 15 HOH HOH . JA 6 HOH A 12 512 26 HOH HOH . JA 6 HOH A 13 513 17 HOH HOH . JA 6 HOH A 14 514 28 HOH HOH . JA 6 HOH A 15 515 16 HOH HOH . JA 6 HOH A 16 516 46 HOH HOH . JA 6 HOH A 17 517 23 HOH HOH . JA 6 HOH A 18 518 45 HOH HOH . JA 6 HOH A 19 519 30 HOH HOH . JA 6 HOH A 20 520 51 HOH HOH . JA 6 HOH A 21 521 29 HOH HOH . JA 6 HOH A 22 522 31 HOH HOH . JA 6 HOH A 23 523 52 HOH HOH . KA 6 HOH B 1 501 6 HOH HOH . KA 6 HOH B 2 502 3 HOH HOH . KA 6 HOH B 3 503 4 HOH HOH . KA 6 HOH B 4 504 7 HOH HOH . KA 6 HOH B 5 505 49 HOH HOH . KA 6 HOH B 6 506 22 HOH HOH . KA 6 HOH B 7 507 5 HOH HOH . KA 6 HOH B 8 508 25 HOH HOH . KA 6 HOH B 9 509 50 HOH HOH . KA 6 HOH B 10 510 44 HOH HOH . KA 6 HOH B 11 511 20 HOH HOH . KA 6 HOH B 12 512 12 HOH HOH . KA 6 HOH B 13 513 14 HOH HOH . KA 6 HOH B 14 514 21 HOH HOH . KA 6 HOH B 15 515 19 HOH HOH . KA 6 HOH B 16 516 41 HOH HOH . KA 6 HOH B 17 517 43 HOH HOH . KA 6 HOH B 18 518 34 HOH HOH . KA 6 HOH B 19 519 39 HOH HOH . KA 6 HOH B 20 520 42 HOH HOH . KA 6 HOH B 21 521 35 HOH HOH . KA 6 HOH B 22 522 48 HOH HOH . KA 6 HOH B 23 523 36 HOH HOH . KA 6 HOH B 24 524 37 HOH HOH . KA 6 HOH B 25 525 47 HOH HOH . KA 6 HOH B 26 526 32 HOH HOH . KA 6 HOH B 27 527 33 HOH HOH . KA 6 HOH B 28 528 40 HOH HOH . KA 6 HOH B 29 529 38 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O12 79K . . . U 2 139.26 72.755 21.318 1 39.17 ? O12 79K 401 B 1 HETATM 2 O O13 79K . . . U 2 139.472 75.058 20.92 1 42.78 ? O13 79K 401 B 1 HETATM 3 O O22 79K . . . U 2 138.676 75.499 26.877 1 42.65 ? O22 79K 401 B 1 HETATM 4 C C01 79K . . . U 2 146.91 74.641 20.296 1 38.32 ? C01 79K 401 B 1 HETATM 5 C C02 79K . . . U 2 146.253 73.316 20.628 1 38.65 ? C02 79K 401 B 1 HETATM 6 C C03 79K . . . U 2 146.978 72.747 21.831 1 38.79 ? C03 79K 401 B 1 HETATM 7 C C04 79K . . . U 2 146.524 72.38 19.464 1 37.46 ? C04 79K 401 B 1 HETATM 8 C C05 79K . . . U 2 144.721 73.465 20.871 1 36.07 ? C05 79K 401 B 1 HETATM 9 C C06 79K . . . U 2 143.889 72.368 21.07 1 32.82 ? C06 79K 401 B 1 HETATM 10 C C07 79K . . . U 2 142.487 72.516 21.288 1 30.82 ? C07 79K 401 B 1 HETATM 11 C C08 79K . . . U 2 141.819 73.747 21.327 1 33.6 ? C08 79K 401 B 1 HETATM 12 C C09 79K . . . U 2 142.683 74.827 21.12 1 32.69 ? C09 79K 401 B 1 HETATM 13 C C10 79K . . . U 2 144.083 74.703 20.9 1 33.58 ? C10 79K 401 B 1 HETATM 14 C C15 79K . . . U 2 139.751 73.243 24.449 1 42.24 ? C15 79K 401 B 1 HETATM 15 C C16 79K . . . U 2 139.793 71.848 24.189 1 39.21 ? C16 79K 401 B 1 HETATM 16 C C17 79K . . . U 2 139.807 70.87 25.213 1 40.44 ? C17 79K 401 B 1 HETATM 17 C C18 79K . . . U 2 139.774 71.299 26.523 1 39.71 ? C18 79K 401 B 1 HETATM 18 C C19 79K . . . U 2 139.729 72.657 26.813 1 40.69 ? C19 79K 401 B 1 HETATM 19 C C20 79K . . . U 2 139.711 73.656 25.796 1 42.65 ? C20 79K 401 B 1 HETATM 20 C C21 79K . . . U 2 139.668 75.141 26.205 1 43.2 ? C21 79K 401 B 1 HETATM 21 C C23 79K . . . U 2 140.728 76.181 25.861 1 46.85 ? C23 79K 401 B 1 HETATM 22 C C24 79K . . . U 2 140.765 77.527 26.239 1 50.75 ? C24 79K 401 B 1 HETATM 23 C C25 79K . . . U 2 141.787 78.462 25.891 1 54.85 ? C25 79K 401 B 1 HETATM 24 C C27 79K . . . U 2 142.883 76.774 24.719 1 52.06 ? C27 79K 401 B 1 HETATM 25 C C28 79K . . . U 2 141.845 75.86 25.08 1 49.01 ? C28 79K 401 B 1 HETATM 26 N N14 79K . . . U 2 139.737 74.2 23.312 1 42.43 ? N14 79K 401 B 1 HETATM 27 N N26 79K . . . U 2 142.896 78.116 25.109 1 56.77 1 N26 79K 401 B 1 HETATM 28 O O29 79K . . . U 2 143.743 78.871 24.813 1 60.66 -1 O29 79K 401 B 1 HETATM 29 S S11 79K . . . U 2 139.961 73.928 21.609 1 40.03 ? S11 79K 401 B 1 HETATM 30 CL CL1 79K . . . U 2 139.79 70.075 27.863 1 41.1 ? CL1 79K 401 B 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 30 #