data_5LWE # _model_server_result.job_id KmHw6h-OKTThArvZ78rpZw _model_server_result.datetime_utc '2024-11-26 10:50:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5lwe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"IA","auth_seq_id":415}' # _entry.id 5LWE # _exptl.entry_id 5LWE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 102.046 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MALONATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 74.02 _cell.angle_beta 64.72 _cell.angle_gamma 62.29 _cell.entry_id 5LWE _cell.length_a 62.571 _cell.length_b 66.197 _cell.length_c 68.424 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LWE _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,JA 1 1 B,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,KA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 T N N ? 5 IA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 97 A CYS 119 1_555 A SG CYS 176 A CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf2 B SG CYS 16 B CYS 38 1_555 B SG CYS 267 B CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 L C17 OLA . A OLA 410 1_555 FA C17 OLA . B OLA 412 1_556 ? ? ? ? ? ? ? ? ? ? ? ? 1.491 ? # _chem_comp.formula 'C3 H2 O4 -2' _chem_comp.formula_weight 102.046 _chem_comp.id MLI _chem_comp.mon_nstd_flag . _chem_comp.name 'MALONATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MLI sing 367 n n C1 C3 MLI sing 368 n n C1 H11 MLI sing 369 n n C1 H12 MLI sing 370 n n C2 O6 MLI doub 371 n n C2 O7 MLI sing 372 n n C3 O8 MLI doub 373 n n C3 O9 MLI sing 374 n n # _atom_sites.entry_id 5LWE _atom_sites.fract_transf_matrix[1][1] 0.015982 _atom_sites.fract_transf_matrix[1][2] -0.008393 _atom_sites.fract_transf_matrix[1][3] -0.006774 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017063 _atom_sites.fract_transf_matrix[2][3] -0.001643 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016237 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 79K A 1 401 1 79K HTL . D 3 OLA A 1 402 1 OLA OLA . E 3 OLA A 1 403 2 OLA OLA . F 3 OLA A 1 404 3 OLA OLA . G 3 OLA A 1 405 8 OLA OLA . H 3 OLA A 1 406 9 OLA OLA . I 3 OLA A 1 407 10 OLA OLA . J 3 OLA A 1 408 11 OLA OLA . K 3 OLA A 1 409 14 OLA OLA . L 3 OLA A 1 410 15 OLA OLA . M 3 OLA A 1 411 16 OLA OLA . N 3 OLA A 1 412 19 OLA OLA . O 3 OLA A 1 413 20 OLA OLA . P 3 OLA A 1 414 23 OLA OLA . Q 3 OLA A 1 415 24 OLA OLA . R 3 OLA A 1 416 28 OLA OLA . S 4 CLR A 1 417 1 CLR CLR . T 5 MLI A 1 418 1 MLI MLI . U 2 79K B 1 401 2 79K HTL . V 3 OLA B 1 402 4 OLA OLA . W 3 OLA B 1 403 5 OLA OLA . X 3 OLA B 1 404 6 OLA OLA . Y 3 OLA B 1 405 7 OLA OLA . Z 3 OLA B 1 406 12 OLA OLA . AA 3 OLA B 1 407 13 OLA OLA . BA 3 OLA B 1 408 17 OLA OLA . CA 3 OLA B 1 409 18 OLA OLA . DA 3 OLA B 1 410 21 OLA OLA . EA 3 OLA B 1 411 22 OLA OLA . FA 3 OLA B 1 412 25 OLA OLA . GA 3 OLA B 1 413 26 OLA OLA . HA 3 OLA B 1 414 27 OLA OLA . IA 5 MLI B 1 415 2 MLI MLI . JA 6 HOH A 1 501 2 HOH HOH . JA 6 HOH A 2 502 11 HOH HOH . JA 6 HOH A 3 503 8 HOH HOH . JA 6 HOH A 4 504 27 HOH HOH . JA 6 HOH A 5 505 24 HOH HOH . JA 6 HOH A 6 506 1 HOH HOH . JA 6 HOH A 7 507 13 HOH HOH . JA 6 HOH A 8 508 9 HOH HOH . JA 6 HOH A 9 509 10 HOH HOH . JA 6 HOH A 10 510 18 HOH HOH . JA 6 HOH A 11 511 15 HOH HOH . JA 6 HOH A 12 512 26 HOH HOH . JA 6 HOH A 13 513 17 HOH HOH . JA 6 HOH A 14 514 28 HOH HOH . JA 6 HOH A 15 515 16 HOH HOH . JA 6 HOH A 16 516 46 HOH HOH . JA 6 HOH A 17 517 23 HOH HOH . JA 6 HOH A 18 518 45 HOH HOH . JA 6 HOH A 19 519 30 HOH HOH . JA 6 HOH A 20 520 51 HOH HOH . JA 6 HOH A 21 521 29 HOH HOH . JA 6 HOH A 22 522 31 HOH HOH . JA 6 HOH A 23 523 52 HOH HOH . KA 6 HOH B 1 501 6 HOH HOH . KA 6 HOH B 2 502 3 HOH HOH . KA 6 HOH B 3 503 4 HOH HOH . KA 6 HOH B 4 504 7 HOH HOH . KA 6 HOH B 5 505 49 HOH HOH . KA 6 HOH B 6 506 22 HOH HOH . KA 6 HOH B 7 507 5 HOH HOH . KA 6 HOH B 8 508 25 HOH HOH . KA 6 HOH B 9 509 50 HOH HOH . KA 6 HOH B 10 510 44 HOH HOH . KA 6 HOH B 11 511 20 HOH HOH . KA 6 HOH B 12 512 12 HOH HOH . KA 6 HOH B 13 513 14 HOH HOH . KA 6 HOH B 14 514 21 HOH HOH . KA 6 HOH B 15 515 19 HOH HOH . KA 6 HOH B 16 516 41 HOH HOH . KA 6 HOH B 17 517 43 HOH HOH . KA 6 HOH B 18 518 34 HOH HOH . KA 6 HOH B 19 519 39 HOH HOH . KA 6 HOH B 20 520 42 HOH HOH . KA 6 HOH B 21 521 35 HOH HOH . KA 6 HOH B 22 522 48 HOH HOH . KA 6 HOH B 23 523 36 HOH HOH . KA 6 HOH B 24 524 37 HOH HOH . KA 6 HOH B 25 525 47 HOH HOH . KA 6 HOH B 26 526 32 HOH HOH . KA 6 HOH B 27 527 33 HOH HOH . KA 6 HOH B 28 528 40 HOH HOH . KA 6 HOH B 29 529 38 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLI . . . IA 5 142.822 82.174 27.535 1 75.11 ? C1 MLI 415 B 1 HETATM 2 C C2 MLI . . . IA 5 141.394 82.445 28.002 1 75.88 ? C2 MLI 415 B 1 HETATM 3 C C3 MLI . . . IA 5 143.796 82.501 28.665 1 74.79 ? C3 MLI 415 B 1 HETATM 4 O O6 MLI . . . IA 5 140.469 81.65 27.691 1 75.69 ? O6 MLI 415 B 1 HETATM 5 O O7 MLI . . . IA 5 141.141 83.461 28.7 1 77.38 ? O7 MLI 415 B 1 HETATM 6 O O8 MLI . . . IA 5 144.194 83.684 28.83 1 75.31 ? O8 MLI 415 B 1 HETATM 7 O O9 MLI . . . IA 5 144.201 81.589 29.433 1 74.55 ? O9 MLI 415 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 249 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 7 #