data_5LWK # _model_server_result.job_id m5t5FEmv823i-YT-l0bsGg _model_server_result.datetime_utc '2024-11-28 04:54:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5lwk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 5LWK # _exptl.entry_id 5LWK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 66.007 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BERYLLIUM TRIFLUORIDE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5LWK _cell.length_a 75.795 _cell.length_b 75.795 _cell.length_c 147.555 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LWK _symmetry.cell_setting ? _symmetry.Int_Tables_number 80 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 9 A ASP 9 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc2 A OD1 ASP 54 A ASP 54 1_555 C BE BEF . A BEF 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.768 ? metalc ? metalc3 A OD2 ASP 54 A ASP 54 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc4 A O ARG 56 A ARG 56 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc5 D MG MG . A MG 202 1_555 G O HOH . A HOH 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? metalc ? metalc6 D MG MG . A MG 202 1_555 G O HOH . A HOH 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc7 B OD1 ASP 9 B ASP 9 1_555 F MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc8 B OD1 ASP 54 B ASP 54 1_555 E BE BEF . B BEF 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.816 ? metalc ? metalc9 B OD2 ASP 54 B ASP 54 1_555 F MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc10 B O ARG 56 B ARG 56 1_555 F MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc11 F MG MG . B MG 202 1_555 H O HOH . B HOH 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc12 F MG MG . B MG 202 1_555 H O HOH . B HOH 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? # _chem_comp.formula 'Be F3 -1' _chem_comp.formula_weight 66.007 _chem_comp.id BEF _chem_comp.mon_nstd_flag . _chem_comp.name 'BERYLLIUM TRIFLUORIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag BE F1 BEF sing 70 n n BE F2 BEF sing 71 n n BE F3 BEF sing 72 n n # _atom_sites.entry_id 5LWK _atom_sites.fract_transf_matrix[1][1] 0.013193 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013193 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006777 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BEF A 1 201 1 BEF BFD . D 3 MG A 1 202 1 MG MG . E 2 BEF B 1 201 2 BEF BFD . F 3 MG B 1 202 2 MG MG . G 4 HOH A 1 301 11 HOH HOH . G 4 HOH A 2 302 19 HOH HOH . G 4 HOH A 3 303 83 HOH HOH . G 4 HOH A 4 304 5 HOH HOH . G 4 HOH A 5 305 79 HOH HOH . G 4 HOH A 6 306 7 HOH HOH . G 4 HOH A 7 307 1 HOH HOH . G 4 HOH A 8 308 39 HOH HOH . G 4 HOH A 9 309 91 HOH HOH . G 4 HOH A 10 310 80 HOH HOH . G 4 HOH A 11 311 58 HOH HOH . G 4 HOH A 12 312 81 HOH HOH . G 4 HOH A 13 313 31 HOH HOH . G 4 HOH A 14 314 21 HOH HOH . G 4 HOH A 15 315 34 HOH HOH . G 4 HOH A 16 316 97 HOH HOH . G 4 HOH A 17 317 48 HOH HOH . G 4 HOH A 18 318 2 HOH HOH . G 4 HOH A 19 319 8 HOH HOH . G 4 HOH A 20 320 88 HOH HOH . G 4 HOH A 21 321 89 HOH HOH . G 4 HOH A 22 322 41 HOH HOH . G 4 HOH A 23 323 24 HOH HOH . G 4 HOH A 24 324 59 HOH HOH . G 4 HOH A 25 325 38 HOH HOH . G 4 HOH A 26 326 22 HOH HOH . G 4 HOH A 27 327 51 HOH HOH . G 4 HOH A 28 328 86 HOH HOH . G 4 HOH A 29 329 15 HOH HOH . G 4 HOH A 30 330 68 HOH HOH . G 4 HOH A 31 331 42 HOH HOH . G 4 HOH A 32 332 92 HOH HOH . G 4 HOH A 33 333 60 HOH HOH . G 4 HOH A 34 334 95 HOH HOH . G 4 HOH A 35 335 57 HOH HOH . G 4 HOH A 36 336 98 HOH HOH . G 4 HOH A 37 337 36 HOH HOH . G 4 HOH A 38 338 44 HOH HOH . G 4 HOH A 39 339 56 HOH HOH . G 4 HOH A 40 340 10 HOH HOH . G 4 HOH A 41 341 87 HOH HOH . G 4 HOH A 42 342 90 HOH HOH . G 4 HOH A 43 343 27 HOH HOH . G 4 HOH A 44 344 55 HOH HOH . H 4 HOH B 1 301 99 HOH HOH . H 4 HOH B 2 302 45 HOH HOH . H 4 HOH B 3 303 40 HOH HOH . H 4 HOH B 4 304 70 HOH HOH . H 4 HOH B 5 305 73 HOH HOH . H 4 HOH B 6 306 52 HOH HOH . H 4 HOH B 7 307 6 HOH HOH . H 4 HOH B 8 308 3 HOH HOH . H 4 HOH B 9 309 82 HOH HOH . H 4 HOH B 10 310 20 HOH HOH . H 4 HOH B 11 311 71 HOH HOH . H 4 HOH B 12 312 18 HOH HOH . H 4 HOH B 13 313 63 HOH HOH . H 4 HOH B 14 314 32 HOH HOH . H 4 HOH B 15 315 26 HOH HOH . H 4 HOH B 16 316 72 HOH HOH . H 4 HOH B 17 317 4 HOH HOH . H 4 HOH B 18 318 23 HOH HOH . H 4 HOH B 19 319 47 HOH HOH . H 4 HOH B 20 320 74 HOH HOH . H 4 HOH B 21 321 46 HOH HOH . H 4 HOH B 22 322 65 HOH HOH . H 4 HOH B 23 323 100 HOH HOH . H 4 HOH B 24 324 75 HOH HOH . H 4 HOH B 25 325 77 HOH HOH . H 4 HOH B 26 326 66 HOH HOH . H 4 HOH B 27 327 85 HOH HOH . H 4 HOH B 28 328 54 HOH HOH . H 4 HOH B 29 329 35 HOH HOH . H 4 HOH B 30 330 84 HOH HOH . H 4 HOH B 31 331 13 HOH HOH . H 4 HOH B 32 332 14 HOH HOH . H 4 HOH B 33 333 94 HOH HOH . H 4 HOH B 34 334 67 HOH HOH . H 4 HOH B 35 335 76 HOH HOH . H 4 HOH B 36 336 93 HOH HOH . H 4 HOH B 37 337 78 HOH HOH . H 4 HOH B 38 338 9 HOH HOH . H 4 HOH B 39 339 64 HOH HOH . H 4 HOH B 40 340 69 HOH HOH . H 4 HOH B 41 341 96 HOH HOH . H 4 HOH B 42 342 28 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 BE BE BEF . . . C 2 -19.794 15.511 5.266 0.8 35.56 ? BE BEF 201 A 1 HETATM 2 F F1 BEF . . . C 2 -20.243 16.253 4.059 0.8 35.59 ? F1 BEF 201 A 1 HETATM 3 F F2 BEF . . . C 2 -18.305 15.709 5.343 0.8 34.98 ? F2 BEF 201 A 1 HETATM 4 F F3 BEF . . . C 2 -20.496 15.759 6.574 0.8 34.18 ? F3 BEF 201 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #