data_5LWN
#
_model_server_result.job_id            KDaFHCMV47lz-ovQF6zcWw 
_model_server_result.datetime_utc      '2024-12-26 20:29:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5lwn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1202}' 
#
_entry.id    5LWN 
#
_exptl.entry_id    5LWN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          92.55 
_cell.angle_gamma         90 
_cell.entry_id            5LWN 
_cell.length_a            42.049 
_cell.length_b            62.57 
_cell.length_c            51.08 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5LWN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             100 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              909 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            J 
_struct_conn.ptnr2_label_atom_id            C12 
_struct_conn.ptnr2_label_comp_id            79S 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             79S 
_struct_conn.ptnr2_auth_seq_id              1209 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        B 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        B 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.662 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 211 n n 
C1 C2 EDO sing 212 n n 
C1 H11 EDO sing 213 n n 
C1 H12 EDO sing 214 n n 
O1 HO1 EDO sing 215 n n 
C2 O2 EDO sing 216 n n 
C2 H21 EDO sing 217 n n 
C2 H22 EDO sing 218 n n 
O2 HO2 EDO sing 219 n n 
#
_atom_sites.entry_id                     5LWN 
_atom_sites.fract_transf_matrix[1][1]    0.023781 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001059 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015982 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019597 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PHU A 1 1201 1 PHU YYY . 
C 3 EDO A 1 1202 2 EDO EDO . 
D 3 EDO A 1 1203 3 EDO EDO . 
E 3 EDO A 1 1204 4 EDO EDO . 
F 3 EDO A 1 1205 5 EDO EDO . 
G 3 EDO A 1 1206 6 EDO EDO . 
H 3 EDO A 1 1207 7 EDO EDO . 
I 4 79R A 1 1208 1 79R VVV . 
J 5 79S A 1 1209 2 79S ZZZ . 
K 6 HOH A 1 1301 102 HOH HOH . 
K 6 HOH A 2 1302 51 HOH HOH . 
K 6 HOH A 3 1303 60 HOH HOH . 
K 6 HOH A 4 1304 182 HOH HOH . 
K 6 HOH A 5 1305 137 HOH HOH . 
K 6 HOH A 6 1306 140 HOH HOH . 
K 6 HOH A 7 1307 113 HOH HOH . 
K 6 HOH A 8 1308 134 HOH HOH . 
K 6 HOH A 9 1309 28 HOH HOH . 
K 6 HOH A 10 1310 18 HOH HOH . 
K 6 HOH A 11 1311 210 HOH HOH . 
K 6 HOH A 12 1312 200 HOH HOH . 
K 6 HOH A 13 1313 104 HOH HOH . 
K 6 HOH A 14 1314 71 HOH HOH . 
K 6 HOH A 15 1315 48 HOH HOH . 
K 6 HOH A 16 1316 87 HOH HOH . 
K 6 HOH A 17 1317 215 HOH HOH . 
K 6 HOH A 18 1318 129 HOH HOH . 
K 6 HOH A 19 1319 176 HOH HOH . 
K 6 HOH A 20 1320 76 HOH HOH . 
K 6 HOH A 21 1321 65 HOH HOH . 
K 6 HOH A 22 1322 198 HOH HOH . 
K 6 HOH A 23 1323 175 HOH HOH . 
K 6 HOH A 24 1324 110 HOH HOH . 
K 6 HOH A 25 1325 4 HOH HOH . 
K 6 HOH A 26 1326 226 HOH HOH . 
K 6 HOH A 27 1327 57 HOH HOH . 
K 6 HOH A 28 1328 209 HOH HOH . 
K 6 HOH A 29 1329 47 HOH HOH . 
K 6 HOH A 30 1330 1 HOH HOH . 
K 6 HOH A 31 1331 131 HOH HOH . 
K 6 HOH A 32 1332 204 HOH HOH . 
K 6 HOH A 33 1333 179 HOH HOH . 
K 6 HOH A 34 1334 13 HOH HOH . 
K 6 HOH A 35 1335 6 HOH HOH . 
K 6 HOH A 36 1336 118 HOH HOH . 
K 6 HOH A 37 1337 128 HOH HOH . 
K 6 HOH A 38 1338 168 HOH HOH . 
K 6 HOH A 39 1339 27 HOH HOH . 
K 6 HOH A 40 1340 14 HOH HOH . 
K 6 HOH A 41 1341 69 HOH HOH . 
K 6 HOH A 42 1342 108 HOH HOH . 
K 6 HOH A 43 1343 73 HOH HOH . 
K 6 HOH A 44 1344 55 HOH HOH . 
K 6 HOH A 45 1345 105 HOH HOH . 
K 6 HOH A 46 1346 166 HOH HOH . 
K 6 HOH A 47 1347 112 HOH HOH . 
K 6 HOH A 48 1348 34 HOH HOH . 
K 6 HOH A 49 1349 92 HOH HOH . 
K 6 HOH A 50 1350 190 HOH HOH . 
K 6 HOH A 51 1351 121 HOH HOH . 
K 6 HOH A 52 1352 9 HOH HOH . 
K 6 HOH A 53 1353 68 HOH HOH . 
K 6 HOH A 54 1354 101 HOH HOH . 
K 6 HOH A 55 1355 197 HOH HOH . 
K 6 HOH A 56 1356 11 HOH HOH . 
K 6 HOH A 57 1357 24 HOH HOH . 
K 6 HOH A 58 1358 35 HOH HOH . 
K 6 HOH A 59 1359 124 HOH HOH . 
K 6 HOH A 60 1360 127 HOH HOH . 
K 6 HOH A 61 1361 125 HOH HOH . 
K 6 HOH A 62 1362 199 HOH HOH . 
K 6 HOH A 63 1363 49 HOH HOH . 
K 6 HOH A 64 1364 161 HOH HOH . 
K 6 HOH A 65 1365 42 HOH HOH . 
K 6 HOH A 66 1366 70 HOH HOH . 
K 6 HOH A 67 1367 12 HOH HOH . 
K 6 HOH A 68 1368 95 HOH HOH . 
K 6 HOH A 69 1369 111 HOH HOH . 
K 6 HOH A 70 1370 15 HOH HOH . 
K 6 HOH A 71 1371 78 HOH HOH . 
K 6 HOH A 72 1372 120 HOH HOH . 
K 6 HOH A 73 1373 8 HOH HOH . 
K 6 HOH A 74 1374 207 HOH HOH . 
K 6 HOH A 75 1375 171 HOH HOH . 
K 6 HOH A 76 1376 32 HOH HOH . 
K 6 HOH A 77 1377 141 HOH HOH . 
K 6 HOH A 78 1378 189 HOH HOH . 
K 6 HOH A 79 1379 172 HOH HOH . 
K 6 HOH A 80 1380 30 HOH HOH . 
K 6 HOH A 81 1381 16 HOH HOH . 
K 6 HOH A 82 1382 220 HOH HOH . 
K 6 HOH A 83 1383 145 HOH HOH . 
K 6 HOH A 84 1384 221 HOH HOH . 
K 6 HOH A 85 1385 97 HOH HOH . 
K 6 HOH A 86 1386 94 HOH HOH . 
K 6 HOH A 87 1387 203 HOH HOH . 
K 6 HOH A 88 1388 75 HOH HOH . 
K 6 HOH A 89 1389 46 HOH HOH . 
K 6 HOH A 90 1390 146 HOH HOH . 
K 6 HOH A 91 1391 206 HOH HOH . 
K 6 HOH A 92 1392 37 HOH HOH . 
K 6 HOH A 93 1393 142 HOH HOH . 
K 6 HOH A 94 1394 19 HOH HOH . 
K 6 HOH A 95 1395 44 HOH HOH . 
K 6 HOH A 96 1396 23 HOH HOH . 
K 6 HOH A 97 1397 86 HOH HOH . 
K 6 HOH A 98 1398 114 HOH HOH . 
K 6 HOH A 99 1399 154 HOH HOH . 
K 6 HOH A 100 1400 214 HOH HOH . 
K 6 HOH A 101 1401 21 HOH HOH . 
K 6 HOH A 102 1402 25 HOH HOH . 
K 6 HOH A 103 1403 29 HOH HOH . 
K 6 HOH A 104 1404 93 HOH HOH . 
K 6 HOH A 105 1405 39 HOH HOH . 
K 6 HOH A 106 1406 53 HOH HOH . 
K 6 HOH A 107 1407 64 HOH HOH . 
K 6 HOH A 108 1408 216 HOH HOH . 
K 6 HOH A 109 1409 72 HOH HOH . 
K 6 HOH A 110 1410 62 HOH HOH . 
K 6 HOH A 111 1411 26 HOH HOH . 
K 6 HOH A 112 1412 7 HOH HOH . 
K 6 HOH A 113 1413 195 HOH HOH . 
K 6 HOH A 114 1414 98 HOH HOH . 
K 6 HOH A 115 1415 109 HOH HOH . 
K 6 HOH A 116 1416 116 HOH HOH . 
K 6 HOH A 117 1417 208 HOH HOH . 
K 6 HOH A 118 1418 31 HOH HOH . 
K 6 HOH A 119 1419 10 HOH HOH . 
K 6 HOH A 120 1420 52 HOH HOH . 
K 6 HOH A 121 1421 183 HOH HOH . 
K 6 HOH A 122 1422 91 HOH HOH . 
K 6 HOH A 123 1423 156 HOH HOH . 
K 6 HOH A 124 1424 123 HOH HOH . 
K 6 HOH A 125 1425 139 HOH HOH . 
K 6 HOH A 126 1426 90 HOH HOH . 
K 6 HOH A 127 1427 96 HOH HOH . 
K 6 HOH A 128 1428 133 HOH HOH . 
K 6 HOH A 129 1429 135 HOH HOH . 
K 6 HOH A 130 1430 153 HOH HOH . 
K 6 HOH A 131 1431 167 HOH HOH . 
K 6 HOH A 132 1432 22 HOH HOH . 
K 6 HOH A 133 1433 194 HOH HOH . 
K 6 HOH A 134 1434 122 HOH HOH . 
K 6 HOH A 135 1435 77 HOH HOH . 
K 6 HOH A 136 1436 138 HOH HOH . 
K 6 HOH A 137 1437 40 HOH HOH . 
K 6 HOH A 138 1438 58 HOH HOH . 
K 6 HOH A 139 1439 45 HOH HOH . 
K 6 HOH A 140 1440 83 HOH HOH . 
K 6 HOH A 141 1441 107 HOH HOH . 
K 6 HOH A 142 1442 150 HOH HOH . 
K 6 HOH A 143 1443 187 HOH HOH . 
K 6 HOH A 144 1444 61 HOH HOH . 
K 6 HOH A 145 1445 196 HOH HOH . 
K 6 HOH A 146 1446 33 HOH HOH . 
K 6 HOH A 147 1447 130 HOH HOH . 
K 6 HOH A 148 1448 56 HOH HOH . 
K 6 HOH A 149 1449 191 HOH HOH . 
K 6 HOH A 150 1450 99 HOH HOH . 
K 6 HOH A 151 1451 38 HOH HOH . 
K 6 HOH A 152 1452 41 HOH HOH . 
K 6 HOH A 153 1453 205 HOH HOH . 
K 6 HOH A 154 1454 20 HOH HOH . 
K 6 HOH A 155 1455 89 HOH HOH . 
K 6 HOH A 156 1456 223 HOH HOH . 
K 6 HOH A 157 1457 54 HOH HOH . 
K 6 HOH A 158 1458 2 HOH HOH . 
K 6 HOH A 159 1459 119 HOH HOH . 
K 6 HOH A 160 1460 103 HOH HOH . 
K 6 HOH A 161 1461 5 HOH HOH . 
K 6 HOH A 162 1462 211 HOH HOH . 
K 6 HOH A 163 1463 201 HOH HOH . 
K 6 HOH A 164 1464 180 HOH HOH . 
K 6 HOH A 165 1465 85 HOH HOH . 
K 6 HOH A 166 1466 163 HOH HOH . 
K 6 HOH A 167 1467 158 HOH HOH . 
K 6 HOH A 168 1468 157 HOH HOH . 
K 6 HOH A 169 1469 213 HOH HOH . 
K 6 HOH A 170 1470 178 HOH HOH . 
K 6 HOH A 171 1471 106 HOH HOH . 
K 6 HOH A 172 1472 188 HOH HOH . 
K 6 HOH A 173 1473 165 HOH HOH . 
K 6 HOH A 174 1474 224 HOH HOH . 
K 6 HOH A 175 1475 184 HOH HOH . 
K 6 HOH A 176 1476 164 HOH HOH . 
K 6 HOH A 177 1477 126 HOH HOH . 
K 6 HOH A 178 1478 170 HOH HOH . 
K 6 HOH A 179 1479 79 HOH HOH . 
K 6 HOH A 180 1480 80 HOH HOH . 
K 6 HOH A 181 1481 177 HOH HOH . 
K 6 HOH A 182 1482 67 HOH HOH . 
K 6 HOH A 183 1483 50 HOH HOH . 
K 6 HOH A 184 1484 136 HOH HOH . 
K 6 HOH A 185 1485 74 HOH HOH . 
K 6 HOH A 186 1486 162 HOH HOH . 
K 6 HOH A 187 1487 181 HOH HOH . 
K 6 HOH A 188 1488 225 HOH HOH . 
K 6 HOH A 189 1489 63 HOH HOH . 
K 6 HOH A 190 1490 82 HOH HOH . 
K 6 HOH A 191 1491 149 HOH HOH . 
K 6 HOH A 192 1492 159 HOH HOH . 
K 6 HOH A 193 1493 222 HOH HOH . 
K 6 HOH A 194 1494 212 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . C 3 -1.975 24.051 39.487 1 53.34 ? C1 EDO 1202 A 1 
HETATM 2 O O1 EDO . . . C 3 -2.495 22.954 38.734 1 55.99 ? O1 EDO 1202 A 1 
HETATM 3 C C2 EDO . . . C 3 -2.249 25.401 38.846 1 53.27 ? C2 EDO 1202 A 1 
HETATM 4 O O2 EDO . . . C 3 -3.11 25.358 37.7 1 54.44 ? O2 EDO 1202 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           437 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           4 
#