data_5LXD
#
_model_server_result.job_id            AH4SB_zzfD7hxSFy8HGHnQ 
_model_server_result.datetime_utc      '2024-10-17 07:29:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5lxd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":503}' 
#
_entry.id    5LXD 
#
_exptl.entry_id    5LXD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    10 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90.4 
_cell.angle_gamma         90 
_cell.entry_id            5LXD 
_cell.length_a            66.24 
_cell.length_b            130 
_cell.length_c            136.33 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5LXD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,O 1 1 
B,I,J,K,L,M,N,P 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
? 3 M N N 
? 3 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C THR 237 A THR 308 1_555 A N PTR 238 A PTR 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale2 A C PTR 238 A PTR 309 1_555 A N ILE 239 A ILE 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale3 B C THR 237 B THR 308 1_555 B N PTR 238 B PTR 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale4 B C PTR 238 B PTR 309 1_555 B N ILE 239 B ILE 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
_atom_sites.entry_id                     5LXD 
_atom_sites.fract_transf_matrix[1][1]    0.015097 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000105 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007692 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007335 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 7A7 A 1 501 1 7A7 DRG . 
D 3 EDO A 1 502 3 EDO EDO . 
E 3 EDO A 1 503 4 EDO EDO . 
F 3 EDO A 1 504 6 EDO EDO . 
G 3 EDO A 1 505 8 EDO EDO . 
H 3 EDO A 1 506 9 EDO EDO . 
I 2 7A7 B 1 501 2 7A7 DRG . 
J 3 EDO B 1 502 1 EDO EDO . 
K 3 EDO B 1 503 2 EDO EDO . 
L 3 EDO B 1 504 5 EDO EDO . 
M 3 EDO B 1 505 7 EDO EDO . 
N 3 EDO B 1 506 10 EDO EDO . 
O 4 HOH A 1 601 119 HOH HOH . 
O 4 HOH A 2 602 29 HOH HOH . 
O 4 HOH A 3 603 138 HOH HOH . 
O 4 HOH A 4 604 92 HOH HOH . 
O 4 HOH A 5 605 155 HOH HOH . 
O 4 HOH A 6 606 182 HOH HOH . 
O 4 HOH A 7 607 48 HOH HOH . 
O 4 HOH A 8 608 62 HOH HOH . 
O 4 HOH A 9 609 165 HOH HOH . 
O 4 HOH A 10 610 137 HOH HOH . 
O 4 HOH A 11 611 106 HOH HOH . 
O 4 HOH A 12 612 103 HOH HOH . 
O 4 HOH A 13 613 148 HOH HOH . 
O 4 HOH A 14 614 152 HOH HOH . 
O 4 HOH A 15 615 153 HOH HOH . 
O 4 HOH A 16 616 17 HOH HOH . 
O 4 HOH A 17 617 27 HOH HOH . 
O 4 HOH A 18 618 12 HOH HOH . 
O 4 HOH A 19 619 38 HOH HOH . 
O 4 HOH A 20 620 145 HOH HOH . 
O 4 HOH A 21 621 14 HOH HOH . 
O 4 HOH A 22 622 125 HOH HOH . 
O 4 HOH A 23 623 170 HOH HOH . 
O 4 HOH A 24 624 110 HOH HOH . 
O 4 HOH A 25 625 162 HOH HOH . 
O 4 HOH A 26 626 9 HOH HOH . 
O 4 HOH A 27 627 3 HOH HOH . 
O 4 HOH A 28 628 168 HOH HOH . 
O 4 HOH A 29 629 156 HOH HOH . 
O 4 HOH A 30 630 107 HOH HOH . 
O 4 HOH A 31 631 129 HOH HOH . 
O 4 HOH A 32 632 91 HOH HOH . 
O 4 HOH A 33 633 47 HOH HOH . 
O 4 HOH A 34 634 15 HOH HOH . 
O 4 HOH A 35 635 99 HOH HOH . 
O 4 HOH A 36 636 24 HOH HOH . 
O 4 HOH A 37 637 7 HOH HOH . 
O 4 HOH A 38 638 23 HOH HOH . 
O 4 HOH A 39 639 58 HOH HOH . 
O 4 HOH A 40 640 25 HOH HOH . 
O 4 HOH A 41 641 39 HOH HOH . 
O 4 HOH A 42 642 158 HOH HOH . 
O 4 HOH A 43 643 19 HOH HOH . 
O 4 HOH A 44 644 130 HOH HOH . 
O 4 HOH A 45 645 37 HOH HOH . 
O 4 HOH A 46 646 184 HOH HOH . 
O 4 HOH A 47 647 131 HOH HOH . 
O 4 HOH A 48 648 80 HOH HOH . 
O 4 HOH A 49 649 20 HOH HOH . 
O 4 HOH A 50 650 126 HOH HOH . 
O 4 HOH A 51 651 28 HOH HOH . 
O 4 HOH A 52 652 93 HOH HOH . 
O 4 HOH A 53 653 120 HOH HOH . 
O 4 HOH A 54 654 2 HOH HOH . 
O 4 HOH A 55 655 64 HOH HOH . 
O 4 HOH A 56 656 26 HOH HOH . 
O 4 HOH A 57 657 124 HOH HOH . 
O 4 HOH A 58 658 87 HOH HOH . 
O 4 HOH A 59 659 217 HOH HOH . 
O 4 HOH A 60 660 215 HOH HOH . 
O 4 HOH A 61 661 36 HOH HOH . 
O 4 HOH A 62 662 71 HOH HOH . 
O 4 HOH A 63 663 180 HOH HOH . 
O 4 HOH A 64 664 116 HOH HOH . 
O 4 HOH A 65 665 35 HOH HOH . 
O 4 HOH A 66 666 123 HOH HOH . 
O 4 HOH A 67 667 8 HOH HOH . 
O 4 HOH A 68 668 77 HOH HOH . 
O 4 HOH A 69 669 4 HOH HOH . 
O 4 HOH A 70 670 174 HOH HOH . 
O 4 HOH A 71 671 143 HOH HOH . 
O 4 HOH A 72 672 51 HOH HOH . 
O 4 HOH A 73 673 173 HOH HOH . 
O 4 HOH A 74 674 89 HOH HOH . 
O 4 HOH A 75 675 166 HOH HOH . 
O 4 HOH A 76 676 175 HOH HOH . 
O 4 HOH A 77 677 74 HOH HOH . 
O 4 HOH A 78 678 46 HOH HOH . 
O 4 HOH A 79 679 214 HOH HOH . 
O 4 HOH A 80 680 114 HOH HOH . 
O 4 HOH A 81 681 135 HOH HOH . 
O 4 HOH A 82 682 134 HOH HOH . 
O 4 HOH A 83 683 151 HOH HOH . 
O 4 HOH A 84 684 183 HOH HOH . 
O 4 HOH A 85 685 66 HOH HOH . 
O 4 HOH A 86 686 81 HOH HOH . 
O 4 HOH A 87 687 122 HOH HOH . 
O 4 HOH A 88 688 203 HOH HOH . 
O 4 HOH A 89 689 140 HOH HOH . 
O 4 HOH A 90 690 132 HOH HOH . 
O 4 HOH A 91 691 136 HOH HOH . 
O 4 HOH A 92 692 59 HOH HOH . 
O 4 HOH A 93 693 50 HOH HOH . 
O 4 HOH A 94 694 100 HOH HOH . 
O 4 HOH A 95 695 65 HOH HOH . 
O 4 HOH A 96 696 150 HOH HOH . 
O 4 HOH A 97 697 111 HOH HOH . 
O 4 HOH A 98 698 167 HOH HOH . 
O 4 HOH A 99 699 133 HOH HOH . 
P 4 HOH B 1 601 32 HOH HOH . 
P 4 HOH B 2 602 79 HOH HOH . 
P 4 HOH B 3 603 102 HOH HOH . 
P 4 HOH B 4 604 41 HOH HOH . 
P 4 HOH B 5 605 42 HOH HOH . 
P 4 HOH B 6 606 205 HOH HOH . 
P 4 HOH B 7 607 163 HOH HOH . 
P 4 HOH B 8 608 195 HOH HOH . 
P 4 HOH B 9 609 33 HOH HOH . 
P 4 HOH B 10 610 196 HOH HOH . 
P 4 HOH B 11 611 104 HOH HOH . 
P 4 HOH B 12 612 187 HOH HOH . 
P 4 HOH B 13 613 118 HOH HOH . 
P 4 HOH B 14 614 105 HOH HOH . 
P 4 HOH B 15 615 185 HOH HOH . 
P 4 HOH B 16 616 101 HOH HOH . 
P 4 HOH B 17 617 21 HOH HOH . 
P 4 HOH B 18 618 149 HOH HOH . 
P 4 HOH B 19 619 208 HOH HOH . 
P 4 HOH B 20 620 117 HOH HOH . 
P 4 HOH B 21 621 211 HOH HOH . 
P 4 HOH B 22 622 210 HOH HOH . 
P 4 HOH B 23 623 45 HOH HOH . 
P 4 HOH B 24 624 98 HOH HOH . 
P 4 HOH B 25 625 157 HOH HOH . 
P 4 HOH B 26 626 201 HOH HOH . 
P 4 HOH B 27 627 63 HOH HOH . 
P 4 HOH B 28 628 194 HOH HOH . 
P 4 HOH B 29 629 146 HOH HOH . 
P 4 HOH B 30 630 44 HOH HOH . 
P 4 HOH B 31 631 108 HOH HOH . 
P 4 HOH B 32 632 109 HOH HOH . 
P 4 HOH B 33 633 34 HOH HOH . 
P 4 HOH B 34 634 30 HOH HOH . 
P 4 HOH B 35 635 16 HOH HOH . 
P 4 HOH B 36 636 181 HOH HOH . 
P 4 HOH B 37 637 56 HOH HOH . 
P 4 HOH B 38 638 11 HOH HOH . 
P 4 HOH B 39 639 18 HOH HOH . 
P 4 HOH B 40 640 202 HOH HOH . 
P 4 HOH B 41 641 97 HOH HOH . 
P 4 HOH B 42 642 164 HOH HOH . 
P 4 HOH B 43 643 10 HOH HOH . 
P 4 HOH B 44 644 43 HOH HOH . 
P 4 HOH B 45 645 61 HOH HOH . 
P 4 HOH B 46 646 213 HOH HOH . 
P 4 HOH B 47 647 83 HOH HOH . 
P 4 HOH B 48 648 189 HOH HOH . 
P 4 HOH B 49 649 197 HOH HOH . 
P 4 HOH B 50 650 121 HOH HOH . 
P 4 HOH B 51 651 95 HOH HOH . 
P 4 HOH B 52 652 169 HOH HOH . 
P 4 HOH B 53 653 206 HOH HOH . 
P 4 HOH B 54 654 159 HOH HOH . 
P 4 HOH B 55 655 13 HOH HOH . 
P 4 HOH B 56 656 88 HOH HOH . 
P 4 HOH B 57 657 69 HOH HOH . 
P 4 HOH B 58 658 204 HOH HOH . 
P 4 HOH B 59 659 5 HOH HOH . 
P 4 HOH B 60 660 177 HOH HOH . 
P 4 HOH B 61 661 6 HOH HOH . 
P 4 HOH B 62 662 54 HOH HOH . 
P 4 HOH B 63 663 207 HOH HOH . 
P 4 HOH B 64 664 90 HOH HOH . 
P 4 HOH B 65 665 86 HOH HOH . 
P 4 HOH B 66 666 72 HOH HOH . 
P 4 HOH B 67 667 1 HOH HOH . 
P 4 HOH B 68 668 115 HOH HOH . 
P 4 HOH B 69 669 67 HOH HOH . 
P 4 HOH B 70 670 199 HOH HOH . 
P 4 HOH B 71 671 190 HOH HOH . 
P 4 HOH B 72 672 85 HOH HOH . 
P 4 HOH B 73 673 198 HOH HOH . 
P 4 HOH B 74 674 75 HOH HOH . 
P 4 HOH B 75 675 193 HOH HOH . 
P 4 HOH B 76 676 216 HOH HOH . 
P 4 HOH B 77 677 53 HOH HOH . 
P 4 HOH B 78 678 176 HOH HOH . 
P 4 HOH B 79 679 139 HOH HOH . 
P 4 HOH B 80 680 113 HOH HOH . 
P 4 HOH B 81 681 55 HOH HOH . 
P 4 HOH B 82 682 82 HOH HOH . 
P 4 HOH B 83 683 68 HOH HOH . 
P 4 HOH B 84 684 179 HOH HOH . 
P 4 HOH B 85 685 186 HOH HOH . 
P 4 HOH B 86 686 147 HOH HOH . 
P 4 HOH B 87 687 60 HOH HOH . 
P 4 HOH B 88 688 78 HOH HOH . 
P 4 HOH B 89 689 49 HOH HOH . 
P 4 HOH B 90 690 192 HOH HOH . 
P 4 HOH B 91 691 84 HOH HOH . 
P 4 HOH B 92 692 178 HOH HOH . 
P 4 HOH B 93 693 112 HOH HOH . 
P 4 HOH B 94 694 191 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . K 3 61.273 -7.232 21.014 1 67.36 ? C1 EDO 503 B 1 
HETATM 2 O O1 EDO . . . K 3 62.267 -6.205 20.913 1 61.11 ? O1 EDO 503 B 1 
HETATM 3 C C2 EDO . . . K 3 61.56 -8.303 19.966 1 70.18 ? C2 EDO 503 B 1 
HETATM 4 O O2 EDO . . . K 3 62.439 -7.763 18.963 1 68.35 ? O2 EDO 503 B 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           268 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#