data_5LXM # _model_server_result.job_id WBkIYT06kfzmeI73qvSOAQ _model_server_result.datetime_utc '2024-11-25 08:43:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5lxm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":510}' # _entry.id 5LXM # _exptl.entry_id 5LXM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5LXM _cell.length_a 79.78 _cell.length_b 79.78 _cell.length_c 140.26 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LXM _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 10 K N N ? 10 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C THR 167 A THR 287 1_555 A N TPO 168 A TPO 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C TPO 168 A TPO 288 1_555 A N LEU 169 A LEU 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 B C GLU 31 D GLU 36 1_555 B N MK8 32 D MK8 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale4 B C MK8 32 D MK8 37 1_555 B N LYS 33 D LYS 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale5 B CE MK8 32 D MK8 37 1_555 B CE MK8 36 D MK8 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale6 B C ASN 35 D ASN 40 1_555 B N MK8 36 D MK8 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale7 B C MK8 36 D MK8 41 1_555 B N GLU 37 D GLU 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale8 B C ASN 38 D ASN 43 1_555 B N NH2 39 D NH2 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? metalc ? metalc1 A OD1 ASN 141 A ASN 261 1_555 K MG MG . A MG 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.67 ? metalc ? metalc2 A OD2 ASP 154 A ASP 274 1_555 K MG MG . A MG 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc3 A OD1 ASP 154 A ASP 274 1_555 L MG MG . A MG 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc4 C O3B ADP . A ADP 501 1_555 K MG MG . A MG 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc5 C O2A ADP . A ADP 501 1_555 K MG MG . A MG 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc6 C O1B ADP . A ADP 501 1_555 L MG MG . A MG 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc7 G O4 PEG . A PEG 505 1_555 L MG MG . A MG 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.939 ? metalc ? metalc8 K MG MG . A MG 509 1_555 M O HOH . A HOH 651 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc9 K MG MG . A MG 509 1_555 M O HOH . A HOH 654 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc10 L MG MG . A MG 510 1_555 M O HOH . A HOH 631 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5LXM _atom_sites.fract_transf_matrix[1][1] 0.012534 _atom_sites.fract_transf_matrix[1][2] 0.007237 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014474 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00713 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ADP A 1 501 1 ADP ADP . D 4 PG4 A 1 502 1 PG4 P6G . E 5 SO4 A 1 503 1 SO4 SO4 . F 6 PEG A 1 504 1 PEG PEG . G 6 PEG A 1 505 2 PEG PEG . H 7 MES A 1 506 1 MES MES . I 8 P4G A 1 507 1 P4G P4G . J 9 CL A 1 508 1 CL CL . K 10 MG A 1 509 3 MG MG . L 10 MG A 1 510 4 MG MG . M 11 HOH A 1 601 33 HOH HOH . M 11 HOH A 2 602 35 HOH HOH . M 11 HOH A 3 603 108 HOH HOH . M 11 HOH A 4 604 37 HOH HOH . M 11 HOH A 5 605 23 HOH HOH . M 11 HOH A 6 606 6 HOH HOH . M 11 HOH A 7 607 115 HOH HOH . M 11 HOH A 8 608 49 HOH HOH . M 11 HOH A 9 609 14 HOH HOH . M 11 HOH A 10 610 189 HOH HOH . M 11 HOH A 11 611 128 HOH HOH . M 11 HOH A 12 612 172 HOH HOH . M 11 HOH A 13 613 105 HOH HOH . M 11 HOH A 14 614 11 HOH HOH . M 11 HOH A 15 615 113 HOH HOH . M 11 HOH A 16 616 114 HOH HOH . M 11 HOH A 17 617 18 HOH HOH . M 11 HOH A 18 618 153 HOH HOH . M 11 HOH A 19 619 3 HOH HOH . M 11 HOH A 20 620 17 HOH HOH . M 11 HOH A 21 621 147 HOH HOH . M 11 HOH A 22 622 24 HOH HOH . M 11 HOH A 23 623 4 HOH HOH . M 11 HOH A 24 624 203 HOH HOH . M 11 HOH A 25 625 39 HOH HOH . M 11 HOH A 26 626 188 HOH HOH . M 11 HOH A 27 627 127 HOH HOH . M 11 HOH A 28 628 22 HOH HOH . M 11 HOH A 29 629 111 HOH HOH . M 11 HOH A 30 630 34 HOH HOH . M 11 HOH A 31 631 205 HOH HOH . M 11 HOH A 32 632 80 HOH HOH . M 11 HOH A 33 633 16 HOH HOH . M 11 HOH A 34 634 15 HOH HOH . M 11 HOH A 35 635 7 HOH HOH . M 11 HOH A 36 636 50 HOH HOH . M 11 HOH A 37 637 10 HOH HOH . M 11 HOH A 38 638 13 HOH HOH . M 11 HOH A 39 639 136 HOH HOH . M 11 HOH A 40 640 110 HOH HOH . M 11 HOH A 41 641 19 HOH HOH . M 11 HOH A 42 642 32 HOH HOH . M 11 HOH A 43 643 200 HOH HOH . M 11 HOH A 44 644 20 HOH HOH . M 11 HOH A 45 645 5 HOH HOH . M 11 HOH A 46 646 204 HOH HOH . M 11 HOH A 47 647 36 HOH HOH . M 11 HOH A 48 648 132 HOH HOH . M 11 HOH A 49 649 143 HOH HOH . M 11 HOH A 50 650 25 HOH HOH . M 11 HOH A 51 651 202 HOH HOH . M 11 HOH A 52 652 116 HOH HOH . M 11 HOH A 53 653 38 HOH HOH . M 11 HOH A 54 654 201 HOH HOH . M 11 HOH A 55 655 8 HOH HOH . M 11 HOH A 56 656 74 HOH HOH . M 11 HOH A 57 657 45 HOH HOH . M 11 HOH A 58 658 101 HOH HOH . M 11 HOH A 59 659 126 HOH HOH . M 11 HOH A 60 660 181 HOH HOH . M 11 HOH A 61 661 117 HOH HOH . M 11 HOH A 62 662 99 HOH HOH . M 11 HOH A 63 663 184 HOH HOH . M 11 HOH A 64 664 106 HOH HOH . M 11 HOH A 65 665 121 HOH HOH . M 11 HOH A 66 666 86 HOH HOH . M 11 HOH A 67 667 66 HOH HOH . M 11 HOH A 68 668 195 HOH HOH . M 11 HOH A 69 669 76 HOH HOH . M 11 HOH A 70 670 100 HOH HOH . N 11 HOH D 1 201 196 HOH HOH . N 11 HOH D 2 202 62 HOH HOH . N 11 HOH D 3 203 61 HOH HOH . N 11 HOH D 4 204 144 HOH HOH . N 11 HOH D 5 205 63 HOH HOH . N 11 HOH D 6 206 134 HOH HOH . N 11 HOH D 7 207 197 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id L _atom_site.label_entity_id 10 _atom_site.Cartn_x 53.867 _atom_site.Cartn_y -12.477 _atom_site.Cartn_z 10.135 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 144.32 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 510 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 1 #